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80 results for “species digitalization”
Figure 12 in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 12. Unrooted non-redundant maximum likelihood tree of the Lysianassoidea COI. Leaves represent individual specimens, coloured by genus where this information was available in the NCBI database. Our samples of Orchomenella rinamontiae, from both RNA sequencing and DNA sequencing, are coloured in red. Ŋe area of the tree illustrated in Figure 13 is enclosed by a grey doưed line. A complete list of sequences in each genus group can be found in the Supporting Information (Table S1).
Figure 9. Synchrotron radiation X in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 9. Synchrotron radiation X-ray phase-contrast micro-tomography (A, B) and scanning electron microscopy (C–F) of gnathopods of Orchomenella rinamontiae. Paratypes, ♂♂, 11.3 mm (A, B) and 11.3 and 15.4 mm (C–F). A, lateral view of right gnathopod 2. B, medial view of right gnathopod 2. C, lateral view of less gnathopod 1. D, medial view of right gnathopod 1. E, lateral view of less gnathopod 2. F, medial view of right gnathopod 2. Abbreviations: a, gnathopod 1 lateral spine; b, gnathopod 1 medial spine; c, gnathopod 2 tip of dactyl. Scale bars: 200 µm.
Figure 10 in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 10. Orchomenella rinamontiae. Holotype, ♀, 24.4 mm. Medial view of less gnathopod 2 (Gn2). Scale bars: 1 mm.
Figure 8 in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 8. Orchomenella rinamontiae. Holotype, ♀, 24.4 mm. Right maxilliped (Mxpd) and less inner plate (L inner pl). Scale bars: 0.1 mm for L inner pl; 0.5 mm for Mxpd.
Figure 7 in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 7. Scanning electron microscopy of maxillipeds of Orchomenella rinamontiae. Paratypes, ♂♂, 15.4 and 16.8 mm. A, anterior/dorsal view. B, less dorsal view. C, dorsal view of outer and inner plates. D, higher magnification of the tip of the right outer plate. E, dorsal view of right palp. Scale bars: 200 µm in A–C; 20 µm in D; 100 µm in E.
Figure 1. Synchrotron radiation X in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 1. Synchrotron radiation X-ray phase-contrast micro-tomography of Orchomenella rinamontiae. Paratype, ♂, 11.3 mm. Volume renderings of lateral less view (A) and ventral view (B). Abbreviations: A1, antenna 1; A2, antenna 2; Gn1, gnathopod 1; Gn2, gnathopod 2. Scale bar: 4.0 mm.
Figure 5 in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 5. Scanning electron microscopy of mandibles of Orchomenella rinamontiae. Paratypes, ♂♂, 15.4 and 16.8 mm. A, B, less palp in median view (A) and lateral view (B). C, D, less mandible in median view (C) and dorsal view (D). Abbreviations: i, incisor; l, lacinia mobilis; m, molar process. Scale bars: 200 µm in A, B; 50 µm in C; 40 µm in D.
Figure 4. Synchrotron radiation X in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 4. Synchrotron radiation X-ray phase-contrast micro-tomography of Orchomenella rinamontiae. Paratype, ♂, 11.3 mm. Volume renderings of the mouth in ventral view (A), higher magnification of the right mouthparts in ventral view (B), right mouthparts in median view (C), and mouth in dorsal view with the observation point inside the animal (D). Abbreviations: a, outer plate maxilliped; b, inner plate maxilliped; c, outer plate maxilla 2; d, inner plate maxilla 2; e, palp maxilla 1; f, outer plate maxilla 1; g, inner plate maxilla 1. Scale bars: 200 µm.
Figure 6 in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 6. Scanning electron microscopy of maxillae of Orchomenella rinamontiae. Paratypes, ♂♂, 15.4 and 16.8 mm. A, right maxilla 2 in median view. B, right maxilla 1 in median view. C, less maxilla 1 in median view. D, right maxilla 1 inner plate in median view. E, F, outer plates of right maxilla 1 (E) and less maxilla 1 (F) in median view. G, tip of maxillular palp. Scale bars: 100 µm in A–C; 40 µm in D–G.
Figure 3 in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 3. Scanning electron microscopy of antenna 1 of Orchomenella rinamontiae. Paratype, ♂, 11.3 mm. Calceoli (white arrows) are present on each flagellar article. A–C, neighbouring calceoli are orientated the same on the proximal part of the flagellum (A, B) and rotated by ~90° on the distal part (C). D, a higher magnification of a lateral view of a calceolus. Abbreviation: a, callynophore. Scale bars: 100 µm in A; 20 µm in B, C; 10 µm in D.
Figure 2 in A new Antarctic species of Orchomenella G.O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?
Figure 2. Scanning electron microscopy of antenna 1 of Orchomenella rinamontiae. Paratype, ♂, 11.3 mm. Scale bar: 200 µm.
Figure 4. Above, digital X in Six species of Amazonian Woodcreepers (Aves: Dendrocolaptidae) preying upon lizards and frogs
Figure 4. Above, digital X-ray of Gonatodes humeralis (USNM 568677) indicating the bones from the gecko skeleton that are more resistant to digestion. Below, histogram indicating the total number and percentage of bones recovered from at least eight geckos preyed upon by six birds. Scale bar 10 mm.
FIGURE 19 in Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
FIGURE 19. Phylogenetic tree of mtMutS. Numbers at the nodes represent: on the left ML bootstrap values and on the right Bayesian posterior probabilities (pp). Nodes with bootstrap value <70 % and pp <0.95 were collapsed. Triangles represent collapsed clades with strong support (pp = 1). Specimens analyzed belonging to Parasphaerasclera, Eleutherobia, and Sphaerasclera are in bold. Cornularia pabloi was used as the outgroup.
FIGURE 20 in Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
FIGURE 20. Phylogenetic tree of the 28S ribosomal gene. Numbers at the nodes represent: on the left ML bootstrap values and on the right Bayesian posterior probabilities (pp). Nodes with bootstrap value <70 % and pp <0.9 were collapsed. Triangles represent collapsed clades with strong support (pp ≥ 0.95). Specimens analyzed belonging to Parasphaerasclera, Eleutherobia, and Sphaerasclera are in bold. Cornularia cornucopiae and Cornularia pabloi were used as outgroup.
FIGURE 17 in Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
FIGURE 17. Paraminabea cf. aldersladei, WAM Z59783, sclerites: A, surface of the polyparium; B, interior of the polyparium.
FIGURE 15. A–C in Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
FIGURE 15. A–C, Paraminabea aldersladei, WAM Z59775: A, in situ; B, a preserved specimen and fresh specimens on deck after collection; C, longitudinal section showing gastric cavities of autozooids and siphonozooids and detail of the colony surface, black arrow pointing to siphonozooids; D–F, Paraminabea cf. aldersladei, WAM Z59783: D, in situ; E, a preserved specimen and fresh specimens on deck after collection; F, longitudinal section showing gastric cavities of autozooids and siphonozooids and detail of the colony surface, black arrow pointing to siphonozooids.
FIGURE 14. Sphaerasclera flammicerebra, WAM Z31480 in Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
FIGURE 14. Sphaerasclera flammicerebra, WAM Z31480, sclerites: A, surface of polyparium; B, interior of the polyparium; C, surface of the base; D, interior of the base.
FIGURE 13. Eleutherobia splendens WAM Z23988-1 in Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
FIGURE 13. Eleutherobia splendens WAM Z23988-1, sclerites: A, surface of polyparium; B, surface of the base; C, interior of the polyparium; D, interior of the base; E, tentacle rachis; F, collaret and points.
FIGURE 11 in Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
FIGURE 11. Eleutherobia imaharai sp. nov., holotype, WAM Z13252, sclerites: A, surface of the base (a = capstan); B, interior of the base.
FIGURE 10 in Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
FIGURE 10. Eleutherobia imaharai sp. nov., holotype, WAM Z13252, sclerites: A, surface of polyparium; B, interior of polyparium; C, collaret and points; D, tentacle rachis; E, pinnules; F, tentacle rachis sclerites in situ; black arrow showing position of pinnules.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.