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30 results for “taxonomy type specimen”
Figure 1 from: Reyes-Velasco J, Goutte S, Freilich X, Boissinot S (2021) Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). ZooKeys 1070: 135-149. https://doi.org/10.3897/zookeys.1070.66598
Figure 1 Map of Ethiopia showing localities of individuals in the Ptychadena neumanni species complex used in this study. Samples with genetic data are represented by different colored circles (P. neumanni species group) or triangles (P. erlangeri species group). Stars depict the approximate type localities of P. neumanni (red), P. erlangeri (grey), and P. nana (white). A black star represents Addis Ababa, the type locality of P. largeni, a junior synonym of P. erlangeri. The approximate route of Oscar Neumann and Carlo von Erlanger's 1900 expedition in Abyssinia, during which the type specimens of all the above species were collected (except for P. largeni) is represented by a dashed line. Black arrow indicates the likely correct type locality for P. erlangeri as suggested by the authors (see Discussion).
Supplementary material 1 from: Reyes-Velasco J, Goutte S, Freilich X, Boissinot S (2021) Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). ZooKeys 1070: 135-149. https://doi.org/10.3897/zookeys.1070.66598
Detailed guidelines for the DNA extraction from museum specimens used in this study
Figure 3 from: Reyes-Velasco J, Goutte S, Freilich X, Boissinot S (2021) Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). ZooKeys 1070: 135-149. https://doi.org/10.3897/zookeys.1070.66598
Figure 3 Phylogenetic inference of members of the Ptychadena neumanni species complex based on mtDNA and ddRAD-seq data A unrooted UPGMA tree of members of the P. neumanni species complex based on 2182 SNPs obtained with ddRAD-sequencing B unrooted Bayesian phylogenetic inference based on the complete mitochondrial genomes of members of the group C bayesian phylogenetic inference based on the concatenated sequences of the 12S and 16S rRNA and cox1. Black circles represent nodes with a posterior support of 1. Names in bold indicate type specimens, while stars indicate historical type specimens sequenced here and are color-coded as in Figure 1. Photographs represent members of the P. neumanni species complex; P. erlangeri (top), P. neumanni (bottom).
Figure 2 from: Reyes-Velasco J, Goutte S, Freilich X, Boissinot S (2021) Mitogenomics of historical type specimens clarifies the taxonomy of Ethiopian Ptychadena Boulenger, 1917 (Anura, Ptychadenidae). ZooKeys 1070: 135-149. https://doi.org/10.3897/zookeys.1070.66598
Figure 2 Comparisons of the topologies of the mitochondrial rRNA 16S (left) and ddRAD-seq (right) for members of the Ptychadena neumanni species complex. Type specimens are indicated in red in the 16S phylogeny. Red lines indicate clades that differ in their placement between 16S and ddRAD-seq, however, the assignment of individuals to a particular species is identical between datasets. Numbers at nodes represent posterior support (pp), while black dots represent nodes with posterior support of 1.
Supplementary material 1 from: Goutte S, Reyes-Velasco J, Kassie A, Boissinot S (2022) Genetic and morphometric analyses of historical type specimens clarify the taxonomy of the Ethiopian Leptopelis gramineus species complex (Anura, Arthroleptidae). ZooKeys 1128: 63-97. https://doi.org/10.3897/zookeys.1128.82176
Maximum Likelihood phylogenetic inference
Supplementary material 2 from: Goutte S, Reyes-Velasco J, Kassie A, Boissinot S (2022) Genetic and morphometric analyses of historical type specimens clarify the taxonomy of the Ethiopian Leptopelis gramineus species complex (Anura, Arthroleptidae). ZooKeys 1128: 63-97. https://doi.org/10.3897/zookeys.1128.82176
Bayesian phylogenetic inference of the Leptopelis gramineus species complex, based on COX1
Supplementary material 4 from: Goutte S, Reyes-Velasco J, Kassie A, Boissinot S (2022) Genetic and morphometric analyses of historical type specimens clarify the taxonomy of the Ethiopian Leptopelis gramineus species complex (Anura, Arthroleptidae). ZooKeys 1128: 63-97. https://doi.org/10.3897/zookeys.1128.82176
Aggressive call of Leptopelis diffidens and aggressive or warm-up call of Leptopelis suanae
Supplementary material 5 from: Goutte S, Reyes-Velasco J, Kassie A, Boissinot S (2022) Genetic and morphometric analyses of historical type specimens clarify the taxonomy of the Ethiopian Leptopelis gramineus species complex (Anura, Arthroleptidae). ZooKeys 1128: 63-97. https://doi.org/10.3897/zookeys.1128.82176
Tables
Figure 3 from: Proćków J, Faltyn-Parzymska A, Jarzembowski P, Proćków M, Jakubska-Busse A (2020) How many type specimens can be stored in old lesser-known herbaria with turbulent histories? – A Juncus case study reveals their importance in taxonomy and biodiversity research. PhytoKeys 153: 85-110. https://doi.org/10.3897/phytokeys.153.50735
Figure 3 Collectors' names. Y-axis: number of herbarium labels analysed.
APPENDIX Individuals included in the genetic and/or skull morphology analyses are presented with source and locality information (reference to sites in Fig. 1 are given in parentheses when available). Voucher numbers are provided for individuals that were collected: AMNH — American Museum of Natural History, New York, NY, USA, BMNH — Natural History Museum, London, UK, FMNH — Field Museum, Chicago, IL, USA, HZM — Harrison Zoological Museum, Kent, UK, MCZ — Museum of Comparative Zoology, Harvard, MA, USA, MZB — Muzeum Zoologicum Bogoriense, Bogor, Indonesia, RMNH — National Museum of Natural History Naturalis, Leiden, Netherlands, SEN — Senckenberg Museum, Frankfurt, Germany, TK — tissue collection and TTU — specimen numbers; Texas Tech. University, Lubbock, TX, USA, and USNM — Smithsonian Institute, Washington D.C., USA. All specimens from peninsular Malaysia with THK or MBCRU field numbers were collected by A. Zubaid, and the specimens or duplicate wing punches were deposited at UKM (Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia). The original taxonomy of type specimens (type) are listed. Haplotypes (Hap) are given for individuals of H. bicolor (=H. bicolor-131) and H. kunzi (=H. bicolor-142). GenBank accession numbers are given for one representative of each unique haplotype in A new species in the Hipposideros bicolor group (Chiroptera: Hipposideridae) from Peninsular Malaysia
APPENDIX Individuals included in the genetic and/or skull morphology analyses are presented with source and locality information (reference to sites in Fig. 1 are given in parentheses when available). Voucher numbers are provided for individuals that were collected: AMNH — American Museum of Natural History, New York, NY, USA, BMNH — Natural History Museum, London, UK, FMNH — Field Museum, Chicago, IL, USA, HZM — Harrison Zoological Museum, Kent, UK, MCZ — Museum of Comparative Zoology, Harvard, MA, USA, MZB — Muzeum Zoologicum Bogoriense, Bogor, Indonesia, RMNH — National Museum of Natural History Naturalis, Leiden, Netherlands, SEN — Senckenberg Museum, Frankfurt, Germany, TK — tissue collection and TTU — specimen numbers; Texas Tech. University, Lubbock, TX, USA, and USNM — Smithsonian Institute, Washington D.C., USA. All specimens from peninsular Malaysia with THK or MBCRU field numbers were collected by A. Zubaid, and the specimens or duplicate wing punches were deposited at UKM (Universiti Kebangsaan Malaysia, Bangi, Selangor, Malaysia). The original taxonomy of type specimens (type) are listed. Haplotypes (Hap) are given for individuals of H. bicolor (=H. bicolor-131) and H. kunzi (=H. bicolor-142). GenBank accession numbers are given for one representative of each unique haplotype
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