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15,277 results for “GENETICS”
FIGURE 3 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species
FIGURE 3. Scatterplot of sPC2 and sPC3 from sheared principal components analysis of 33 standard and truss measurements taken from female (n = 153) Macrhybopsis boschungi, M. etnieri, M. pallida, M. tomellerii and M. hyostoma from Mississippi River drainage.
FIGURE 5 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species
FIGURE 5. Scatterplot of sPC2 and sPC3 from sheared principal components analysis of 33 standard and truss measurements taken from female (n = 84) Macrhybopsis boschungi and M. tomellerii.
FIGURE 8 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species
FIGURE 8. Tertiary eustatic changes in sea level. Meters above or below present sea level are tentative. From Vail & Hardenbol (1979); reproduced in Gilbert (1987: 37, fig. 5).
FIGURE 2 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species
FIGURE 2. Distribution of southeastern species of Macrhybopsis east of the Mississippi River. Individual species are identified by symbol and color. Circles with half blue and half red represent locations where M. boschungi and M. etnieri occur syntopically.
FIGURE 4 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species
FIGURE 4. Scatterplot of sPC2 and sPC3 from sheared principal components analysis of 33 standard and truss measurements taken from male (n = 93) Macrhybopsis boschungi, M. etnieri, M. pallida, M. tomellerii, and M. hyostoma from Mississippi River drainage.
FIGURE 1 in Morphological and genetic evolution in eastern populations of the Macrhybopsis aestivalis complex (Cypriniformes: Cyprinidae), with the descriptions of four new species
FIGURE 1. Species of Macrhybopsis aestivalis species complex from eastern North America. A) Macrhybopsis hyostoma, UAIC 11060.03, Female, 34 mm SL, Alabama, Limestone County, Elk River, 28 September 1994. B) Macrhybopsis boschungi, UAIC 10845.03, Female, 50 mm SL, Alabama, Dallas County, Cahaba River, 12 July 1993. C) Macrhybopsis etnieri, UAIC 11053.01, Female, 44 mm SL, Alabama, Bibb County, Cahaba River, 24 June 1994. D) Macrhybopsis pallida, UAIC 10855.04, Female, 36 mm SL, Alabama, Escambia County, Conecuh River, 15 July 1993. E) Macrhybopsis tomellerii, UAIC 11364.03, Female, 51 mm SL, Mississippi, Covington County, Pascagoula River drainage, 18 February 1994.
Dataset from 'Billino,J., Hennig, J., & Gegenfurtner K.R. (2016). The role of dopamine in anticipatory pursuit eye movements: Insights from genetic polymorphisms in healthy adults. eNeuro, 3(6). doi: 10.1523/ENEURO.0190-16.2016'
<p>Dataset associated with the following publication:</p> <p>Billino,J., Hennig, J., & Gegenfurtner K.R. (2016). The role of dopamine in anticipatory pursuit eye movements: Insights from genetic polymorphisms in healthy adults. eNeuro, 3(6). doi: 10.1523/ENEURO.0190-16.2016 <span><a></a></span></p> <p>--------------------------------------------------------------</p> <p>The folder contains 2 data files and 1 description file providing column labels.<br> The data file 'anticippursuit.txt' contains the dataset for the anticipatory pursuit task.<br> The data file 'visualpursuit.txt' contains the dataset for the visually pursuit task.</p> <p>-------------------------------------------------------------</p> <p>For further questions, please contact:<br> jutta.billino[at]psychol.uni-giessen.de</p> <p> </p>
Genetic and epigenetic variation in branching Porites corals
<p>This is a repository detailing bioinformatic analyses to accompany a manuscript on genetic and epigenetic variation in branching <em>Porites</em> corals from Belize, titled "Genetic and epigenetic insight into morphospecies in a reef coral".</p> <p>Also included is the <em>Symbiodinum kawagutii </em>genome assembly obtained on 5-31-2017 from http://web.malab.cn/symka_new/download.jsp. These data are included in this repository because they are not currently located in a public genome database. Reference for these data: Lin, S., Cheng, S., Song, B., Zhong, X., Lin, X., Li, W., Li, L., Zhang, Y., Zhang, H., Ji, Z. and Cai, M., 2015. The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis. <em>Science</em>, <em>350</em>(6261), pp.691-694.</p>
Supplemental Data to: Variation in recombination rate and its genetic determinism in sheep populations
<p>Supplemental Data to reproduce the analysis of</p> <p><strong>Variation in recombination rate and its genetic determinism in sheep (Ovis Aries) populations from combining multiple genome-wide datasets.</strong></p> <p>Morgane Petit*, Jean-Michel Astruc✝, Julien Sarry*, Laurence Drouilhet*, Stéphane Fabre*, Carole Moreno*, Bertrand Servin*</p> <p>*INRA, Génétique, Physiologie et Systèmes d’Elevage, F-31326 Castanet-Tolosan, France</p> <p>✝Institut de l’Elevage, F-31326 Castanet-Tolosan, France</p> <p><strong>Abstract</strong></p> <p>Recombination is a complex biological process that results from a cascade of multiple events during meiosis. Understanding the genetic determinism of recombination can help to understand if and how these events are interacting. To tackle this question, we studied the patterns of recombination in sheep, using multiple approaches and datasets. We constructed male recombination maps in a dairy breed from the south of France (the Lacaune breed) at a fine scale by combining meiotic recombination rates from a large pedigree genotyped with a 50K SNP array and historical recombination rates from a sample of unrelated individuals genotyped with a 600K SNP array. This analysis revealed recombination patterns in sheep similar to other mammals but also genome regions that have likely been affected by directional and diversifying selection. We estimated the average recombination rate of Lacaune sheep at 1.5 cM/Mb, identified about 50,000 crossover hotspots on the genome and found a high correlation between historical and meiotic recombination rate estimates. A genome-wide association study revealed two major loci affecting inter-individual variation in recombination rate in Lacaune, including the <em>RNF212</em> and<em> HEI10</em> genes and possibly 2 other loci of smaller effects including the <em>KCNJ15</em> and <em>FSHR</em> genes. Finally, we compared our results to those obtained previously in a distantly related population of domestic sheep, the Soay. This comparison revealed that Soay and Lacaune males have a very similar distribution of recombination along the genome and that the two datasets can be combined to create more precise male meiotic recombination maps in sheep. Despite their similar recombination maps, we show that Soay and Lacaune males exhibit different heritabilities and QTL effects for inter-individual variation in genome-wide recombination rates.</p> <p> </p>
FIGURE 2 in Genetic and morphological evidence for a new cryptic species of Ectinogonia (Coleoptera: Buprestidae) from central Chile
FIGURE 2. Distribution, environment and habitat of Ectinogonia cryptica Anguita-Salinas & Zuñiga-Reinoso n. sp. A) Map with the records of E. cryptica.; (B) environment in the locality of Las Comadres; (C) adult of E. cryptica on Colettia sp.
FIGURE 1 in Genetic and morphological evidence for a new cryptic species of Ectinogonia (Coleoptera: Buprestidae) from central Chile
FIGURE 1. Schematic abstract of the results of this study. A) Dorsal view of a paratype specimen of Ectinogonia cryptica Anguita-Salinas & Zuñiga-Reinoso sp. n., from Las Trancas, Ñuble province, bar length 10mm; B) E. crytica aedeagus, dorsal view, bar length 1mm. C) Not rooted NJ tree of the Ectinogonia sequences studied. The numbers over the nodes correspond to bootstrap value expressed in scale 0 to 1.
FIGURE 3 in Genetic and morphological variability among the populations assigned to the genus Tropiocolotes Peters, 1880 (Squamata: Gekkonidae) in south Iran
FIGURE 3. Bayesian inference phylogenetic tree of Tropiocolotes populations in southern Iran using two mtDNA genes (COI and 16S). Tropiocolotes steudneri sensu stricto from Egypt was used as the outgroup. Numbers next to the nodes are the MP and ML bootstrap values and BI posterior probabilities (MP/ML/BI).
FIGURE 1 in Genetic and morphological variability among the populations assigned to the genus Tropiocolotes Peters, 1880 (Squamata: Gekkonidae) in south Iran
FIGURE 1. Map of southern Iran showing sampling localities for the populations of Tropicolates. Blue circles denote T. naybandensis and red circles denote Tropiocolotes cf. steudneri. The type locality of T. naybandensis is marked with a star.
FIGURE 2 in Genetic and morphological variability among the populations assigned to the genus Tropiocolotes Peters, 1880 (Squamata: Gekkonidae) in south Iran
FIGURE 2. Ordination of principal component 1 (PC1) against principal component 2 (PC2) for differentiated characters of the genus Tropiocolotes in southern Iran.
GWAS Summary data generated for study: disease clusters and their genetic determinants following a diagnosis of depression
<p>Second version of GWAS summary data</p> <p>A1: effect allele</p> <p>A2: other allele</p> <p>Project github page: https://github.com/HZcohort/3D-Disease-Network</p>
Canadian Arctic whale genomic data and code to estimate genetic offsets
<div>This is a repository for code and data used in estimating genetic offsets in Arctic whales in the eastern Canadian Arctic. See README.md file for details.</div> <div><br>Associated publication:</div> <div>de Greef, E., Müller, C., Snead A., Rivkin, L. R., Ferguson, S. H., Watt, C. A., Marcoux, M., Petersen, S. D., and Garroway, C. J. (2025). Identifying areas of potential risk based on future genetic adaptability in three Arctic whale species. <em>The American Naturalist.</em></div> <div> </div>
Conserved genetic markers reveal widespread diatom reproduction in the global ocean
<p>Datasets associated with the study "Conserved genetic markers reveal widespread diatom reproduction in the global ocean" (post second revision, V3)</p>
Data from: Do genetic ecotypes drive physiological responses to a changing world? Indications that coastal Atlantic cod are better adapted to ocean stressors
<p>Genotypic information for 48 Atlantic cod (<i>Gadus morhua</i>) used in study by Perry <i>et al</i>.: Do genetic ecotypes drive physiological responses to a changing world? Indications that coastal Atlantic cod are better adapted to ocean stressors.</p><p>Genotypes provided in the GenePop format, with the 3776 SNP loci used detailed in Henriksson <i>et al</i>. (<i>in prep</i>). For further information, please contact Simon Henriksson (simon.henriksson@gu.se). </p><p> </p>
Phylogenetically under‐dispersed gut microbiomes are not correlated with host genomic heterozygosity in a genetically diverse reptile community
<p>We are providing semi-processed datasets relevant to the paper "Phylogenetically under-dispersed gut microbiomes across a range of host genetic diversity in a reptile community point to structuring by conserved host genes." Specifically, we include VCF files of RADseq data from host individuals, which are processed versions of the raw reads available at NCBI's Short Read Archive under PRJA744273. These data were processed for heterozygosity calculation using an adapted of the pipeline presented in Singhal et al. 2017, "Genetic diversity is largely unpredictable but scales with museum occurrences in a species-rich clade of Australian lizards."</p> <p>In addition, we include a database of 16S sequences from gut microbiome amplicon sequencing from the same host animals. The raw reads are available at NCBI's Short Read Archive under PRJNA746253. The sequences accessioned here are a curated, cleaned set of reference reads to which we realigned reads from each individual host.</p>
Figure 2 in Comparative genetic differentiation study of three coexisting mangrove crabs in western Atlantic
Figure 2. Map showing the sampling sites for Leptuca thayeri along the western Atlantic, with collection localities (circles) inside each designated population (dashed areas – names indicated). Different colours represent different populations. States and/or countries of each locality are indicated. For each population, the number of sequences obtained for both mtDNA COI and 16S rDNA genes is indicated. Details of the localities sampled are reported in Table 1. Abbreviations of States: Mexico: CC: Campeche; Brazil: AP: Amapá; PA: Pará; MA: Maranhão; CE: Ceará; PE: Pernambuco; AL: Alagoas; BA: Bahia; ES: Espírito Santo; RJ: Rio de Janeiro; SP: São Paulo; PR: Paraná; SC: Santa Catarina.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.