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Figure 3 in Offspring sex and maternal effects influence the development and natal dispersal of an arboreal marsupial
Figure 3.—The percentage of previously unfamiliar shelter sites used by brushtail possums (Trichosurus vulpecula) during their exploratory stage (± 1 SE). *Indicates significance (P ≤ 0.05).
Figure 2 in Offspring sex and maternal effects influence the development and natal dispersal of an arboreal marsupial
Figure 2.—The percentage of new shelter sites used by mother brushtail possums (Trichosurus vulpecula) when they had either female or male young-at-foot (± 1 SE).
Modeling the Development of an Equatorial Plasma Bubble during a Midnight Temperature Maximum with SAMI3/WACCM-X
<p>dataset for figures in the paper</p> <p> Modeling the Development of an Equatorial Plasma Bubble during a Midnight Temperature Maximum with SAMI3/WACCM-X</p>
Identification of upper thermal thresholds during development in the endangered Nechako white sturgeon with management implications for a regulated river
<p>Climate change-induced warming effects are already evident in river ecosystems and projected increases in temperature will continue to amplify stress on fish communities. Additionally, many rivers globally are impacted by dams which have many negative effects on fishes by altering flow, blocking fish passage, and changing sediment composition. However, in some systems, dams present an opportunity to manage river temperature through regulated releases of cooler water. For example, there is a government mandate for Kenney dam operators in the Nechako River, BC Canada, to maintain river temperature below 20°C in July and August to protect migrating sockeye salmon (<em>Oncorhynchus</em> <em>nerka</em>). However, there is another endangered fish species inhabiting the same river, Nechako white sturgeon (<em>Acipenser</em> <em>transmontanus</em>), and it is unclear if these current temperature regulations, or timing of the regulations, are suitable for spawning and developing sturgeon. In this study, we aimed to identify upper thermal thresholds in white sturgeon embryos and larvae to investigate if exposure to current river temperatures are playing a role in recruitment failure. We incubated embryos and yolk-sac larvae in three environmentally relevant temperatures (14°, 18°C, and 21°C) throughout development to identify thermal thresholds across different levels of biological organization. Our results demonstrate upper thermal thresholds at 21°C across physiological measurements in embryo and yolk-sac larvae white sturgeon. Prior to hatch, both embryo survival and metabolic rate were reduced at 21°C. Following hatch, sublethal consequences continued at 21°C as larval sturgeon had decreased thermal plasticity and a dampened transcriptional response during development. In recent years, the Nechako River has reached 21°C by the end of June, and at this temperature, a decrease in sturgeon performance is evident in most of the traits measured. As such, the thermal thresholds identified here suggest current temperature regulations may not be suitable for developing white sturgeon and future recruitment.</p>
FIG. 3. Hibernation habitat study methods developed for a in Hoplodactylus tohu Scarsbrook & Walton & Rawlence & Hitchmough 2023, n. sp.
FIG. 3. Hibernation habitat study methods developed for a partially mined peatland ecosystem inhabited by a Massasauga population located in southern Ontario, Canada. Life-zone methods include a grid of groundwater wells paired with a frost tube in each study area (Mined and Not Mined). Life zone (LZ) equals the groundwater level (GWL) minus frost depth (FD). All measurements are relative to the ground surface.
FIG. 4. PCA plot depicting the winter-type categories developed for winter environmental data for a in Hoplodactylus tohu Scarsbrook & Walton & Rawlence & Hitchmough 2023, n. sp.
FIG. 4. PCA plot depicting the winter-type categories developed for winter environmental data for a Massasauga population located in southern Ontario, Canada. We analyzed local annual winter (November–April) environmental data: total precipitation, rainfall, snow, and the number of days mean temperature is below zero (Environment and Climate Change Canada, 2016).
How do developers use Code Snippets in README files? Analyzing between Python Software Development and Scientific Libraries
<p>README files contain crucial information for clients to effectively use the software.<br> However, we sometimes found that developers either present insufficient content or leave the README files empty.<br> Recent works suggest that, in popular repositories, developers tend to present more code snippets in their README files.<br> In this study, we investigate how developers present code snippets in 10,784 README files of PyPI libraries in terms of (i) the types of code snippets and (ii) the sections where code snippets are presented.<br> Our results indicate the prevalence of types of code snippets in various sections across different types of libraries.</p>
SAMI3/WACCM-X Modeling of the Development of an Equatorial Plasma Bubble during a Midnight Temperature Maximum
<p>Data set for figures in the paper ' Modeling the Development of an Equatorial Plasma Bubble during a Midnight Temperature Maximum with SAMI3/WACCM-X'</p>
Datasets supporting the publication: Evaluating night-time light sources and correlation with socio-economic development using high-resolution multi-spectral Jilin-1 satellite imagery of Quito, Ecuador
<p>##################################</p> <p><strong>Datasets supporting the publication:</strong></p> <p><em>Evaluating night-time light sources and correlation with socio-economic development using high-resolution multi-spectral Jilin-1 satellite imagery of Quito, Ecuador.</em></p> <p>International Journal of Remote Sensing. <a href="https://doi.org/10.1080/01431161.2023.2205983">https://doi.org/10.1080/01431161.2023.2205983</a></p> <p>C. Scott Watson<sup>a</sup>*, John R. Elliott<sup>a</sup>, Marco Córdova<sup>b</sup>, Jonathan Menoscal<sup>b</sup>, Santiago Bonilla-Bedoya<sup>c</sup></p> <p><em><sup>a</sup>COMET, School of Earth and Environment, University of Leeds, LS2 9JT, UK</em></p> <p><em><sup>b</sup>Facultad Latinoamericana de Ciencias Sociales, FLACSO, Quito, Ecuador</em></p> <p><em><sup>c</sup>Research Center for the Territory and Sustainable Habitat, Universidad Tecnológica Indoamérica,Machala y Sabanilla, 170301, Quito, Ecuador</em></p> <p><strong>-Please refer to the publication for details on the production of each dataset.<br> -Please cite the publication and this dataset repository when using the data.</strong></p> <p>##################################</p> <p><strong>Data:</strong></p> <table> <tbody> <tr> <td><strong>File</strong></td> <td><strong>Description</strong></td> </tr> <tr> <td>J1_mosaic_max.tif</td> <td>Mosaicked Jilin-1 multi-spectral night-time image of Quito, Ecuador. Acquisition: 8th July 2021 at ~10:30 UTC (05:30 local time)</td> </tr> <tr> <td>corine_landcover_S2_20210705T153621_20210705T154215_T17MQV.tif</td> <td>Land cover classification applied to a Sentinel-2 image (5th July 2021)</td> <td> </td> </tr> <tr> <td>corine_landcover_symbology_qgis.txt</td> <td>Land cover classification symbology for QGIS</td> </tr> <tr> <td>light_type_classification.tif</td> <td>Light type classification: class 1 = LED, class 10 = HPS.</td> </tr> <tr> <td>classified_light_locations.shp</td> <td>Classified light source (point) locations</td> </tr> </tbody> </table>
Ensemble Ecological Niche Models, in 2019 and across RCP 2.6, 4.5, and 8.5 scenarios in 2050 and 2100, of 1508 European Marine Species based on Ecological Niche Models developed with Artificial Neural Networks, Maximum Entropy, Support Vector Machines, and AquaMaps at 0.5° Resolution
<p>Ensemble Ecological Niche Models, in 2019 and across RCP 2.6, 4.5, and 8.5 scenarios in 2050 and 2100, of 1508 European marine species based on Ecological Niche Models developed with (i) Artificial Neural Networks, (ii) Maximum Entropy, (iii) Support Vector Machines, and (iv) AquaMaps at 0.5° Resolution. The data report, for each 0.5° cell, how many models (from 0 to 4) overcome a model-specific decision threshold to assess species presence in the cell.</p>
Supplementary File: followed by Predicting Religious Undergraduates' Career Development: The Salient Roles of Religious Calling, Life Satisfaction, and Quest Religiosity
<p>Supplementary File: followed by Predicting Religious Undergraduates’ Career Development: The Salient Roles of Religious Calling, Life Satisfaction, and Quest Religiosity</p>
Process development and analyses for the co-production of 2-methyltetrahydrofuran and 1,4-pentanediol from lignocellulosic biomass
<p>The development of technologies for utilizing biomass has attracted attention because biomass can be produced sustainably worldwide. Biomass-derived 2-methyltetrahydrofuran (MTHF), which is a promising alternative to gasoline, has great market potential and a growing demand. However, in conventional biomass conversion processes, the minimum selling price (MSP) of biochemicals is not economically acceptable. Co-production of biochemicals can increase the economics of biomass utilization. Herein, we developed a process for coproducing MTHF and 1,4-pentanediol (1,4-PDO) from lignocellulosic biomass. After biomass fractionation, cellulose and hemicellulose were converted to levulinic acid (LA), and lignin was used for heat and electricity generation. LA was then converted to γ-valerolactone (GVL). As a platform material for co-production, GVL was converted into MTHF and 1,4-PDO in each subsystem. The split ratio of GVL was controlled to efficiently produce MTHF and 1,4-PDO according to market conditions. Additionally, we performed a techno-economic and life-cycle assessment (TEA and LCA, respectively) for the developed process. The MSP of MTHF was calculated based on the TEA results, and the environmental impacts were quantitatively calculated based on the LCA results. We performed heat integration using pinch analysis and then reduced the energy requirement of the proposed process. The key cost drivers and environmental factors of the proposed process were identified via sensitivity analyses. Consequently, during the processing of 2,000 ton/day of corn stover (raw material of lignocellulose), the MSP of MTHF was calculated as $2.64/GGE (gasoline equivalent), and representative environmental impacts such as climate change and fossil depletion were calculated as -0.296 kg CO2 eq and -0.056 kg oil eq, respectively. <a name="_Hlk131691308"></a>As a result, we can increase the economics of commercial production of MTHF and 1,4-PDO with environmental sustainability. The proposed process can serve as a potential solution to the growing demand for the need for more sustainable biomass utilization.</p>
Test case selection through novel methodologies for software application developments
<p>Test case selection is to minimize the time and effort spent for software testing in real time practice. During the course of software testing, the software firms are in want of techniques to finish the testing in a stipulated time, whilst uncompromising on quality. The motto is to select subset of test cases rather to take up all available test cases to uncover most of the bugs. Clustering of test cases using ranking and also based on similarity coefficients is to be implemented. The experimented results have to show up the techniques proposed improving the catching up of errors in a comparatively shorter duration. In this research, eleven different features were considered in order to cluster the test cases. There are two methodologies implemented. In the first methodology, each cluster will cover set of specific features to a certain percentage. Depending on the feature's coverage, cluster of test cases can be selected. These clusters were formed using ranking methodology. In the second methodology, similarity among test cases based on eleven features is found. Then max-min composition is used to find fuzzy equivalences, upon which clusters are formed. Most similar test cases are clustered.</p>
Development under predation risk increases serotonin-signaling, variability of turning behavior and survival in adult fruit flies Drosophila melanogaster
<p>The development of high-throughput behavioral assays, where numerous individual animals can be analyzed in various experimental conditions, has facilitated the study of animal personality. Previous research showed that isogenic Drosophila melanogaster flies exhibit striking individual non-heritable locomotor handedness. The variability of this trait, i.e., the predictability of left-right turn biases, varies across genotypes and under the influence of neural activity in specific circuits. This suggests that the brain can dynamically regulate the extent of animal personality. It has been recently shown that predators can induce changes in prey phenotypes via lethal or nonlethal effects affecting the serotonergic signaling system. In this study, we tested whether fruit flies grown with predators exhibit higher variability/lower predictability in their turning behavior and higher survival than those grown with no predators in their environment. We confirmed these predictions and found that both effects were blocked when flies were fed an inhibitor (αMW) of serotonin synthesis. The results of this study demonstrate a negative association between the unpredictability of turning behavior of fruit flies and the hunting success of their predators. We also show that the neurotransmitter serotonin controls predator-induced changes in the turning variability of fruit flies, regulating the dynamic control of behavioral predictability.</p>
Development of a Predictive Model for In-Hospital Mortality in COVID-19 Patients Using CAR, IL-6, IL-6/LY, and NLR: A Single-Center Study in Indonesia
<p>Table 1. Demographic data of the subject</p> <p><sup>*</sup>mean (+SD); <sup>#</sup>median (Q1-Q3)</p> <p> </p> <p>Table 2. CAR, IL-6, IL-6/LY, NLR cut-off values and performance in determining mortality</p>
A comment on Dincecco et al. (2022): Pre-colonial warfare and long-run development in India
<p>We test the reproducibility and replicability of Dincecco et al. (2022),<br> which reports a positive relationship between pre-colonial interstate warfare<br> and long-run development patterns across India. Overall, we confirm that all<br> of the study’s estimates are computationally reproducible using the provided<br> replication package in Stata, but note that the ease of replication could be<br> improved by the provision of code and intermediate datasets for the conflict<br> exposure measure. We test for and find no evidence of data manipulation in<br> the final datasets. Concerning direct replicability, we consider different ways<br> of measuring distance to conflicts and also alternative proxies for both the<br> dependent variable and variables which capture channels by which the main<br> effects operate. We find that some estimates are sensitive to the type of con-<br> flict considered. Other estimates are sensitive to the time period considered,<br> most likely due to time heterogeneity in the number of conflicts recorded.<br> Nevertheless, most estimates are substantially in line with the original study</p>
Development time and fecundity of Spodoptera frugiperda fed on different host plant
<p>Data set of development time and fecundity of Spodoptera frugiperda fed on different host plant in Indonesia</p>
Baseline EEG in the first year of life: insights into the development of autism spectrum disorder and language impairments
<p>The dataset includes power values obtained from baseline EEG recorded in infants. Specifically, for each infant the Power Spectral Density (PSD) was estimated for epochs of 30 s (at least 2 epochs) using the Welch’s method (Hamming window of 10s with 50% overlap) and successively log transformed as follow: log PSD = log10(1+PSD). The power in the following bands was computed: delta (2-4 Hz), theta (4-6 Hz), low-alpha (6-9-Hz), high-alpha (9-13 Hz), beta (13-30 Hz) and gamma (30-45 Hz). Two clusters of 6 frontal electrodes were selected (frontal left cluster and frontal right cluster) and power values were then averaged across electrodes within each cluster. Thus, the database contains for each subjects and frequency band two values of power one related to the frontal left cluster and the other one related to frontal right cluster.</p> <p>Each raw in the database corresponds to a subject and each column to a different variable.</p> <p>Column A, Subject code;</p> <p>Column B, Group: 0 = typically developing (TD) infant; 1 = infant higher likelihood of developing language and learning impairments (HL-LLI); 2 = infant at higher likelihood of developing autism spectrum disorder (HL-ASD);</p> <p>Column C, Diagnosis_group: 0 = children from the original TD group (without familiarity for neither ASD nor LLI) who at 3 years of age scored above the 30th percentile in the parent-administered Language Development Survey (LDS) (Rescorla and Alley, 2001); 1 = children diagnosed with Developmental Language Disorders/Developmental Dyslexia (DLD/DD); 2 = children diagnosed with ASD;</p> <p>Column D, Time_point: 1 = data related to the EEG recording performed at six months of age; 2 = data related to the EEG recording performed at twelve months of age;</p> <p>Columns from E to P: power values obtained in the frontal left (F_sx) and right (F_dx) clusters for each frequency band.</p> <p>All details about subjects, groups, data acquisition and preprocessing are available in the following manuscript: Piazza, C., Dondena, C., Riboldi, E. M., Riva, V., & Cantiani, C. (2023). Baseline EEG in the first year of life: Preliminary insights into the development of autism spectrum disorder and language impairments. <em>iScience</em>, <em>26</em>(7).</p> <p>Matlab .m files related to the preprocessing steps and the power value extraction are also available.</p>
THE ROLE OF IMMATURE GRANULOCYTES IN THE EARLY DIAGNOSIS OF PNEUMONIA DEVELOPING SECONDARY TO RIB FRACTURES
<p>This retrospective study aimed to investigate the role of immature granulocytes (IGs) in the early diagnosis of pneumonia secondary to rib fractures.</p>
Microscopy-based assessment of H3K27-acetylation at RNA polymerase II clusters during early stages of zebrafish embryo development
<p>This repository contains the data and MatLab analysis scripts of the analysis of histone 3 lysine 27 acetylation (H3K27ac) at RNA polymerase II clusters over the course of zygotic genome activation and gastrulation of zebrafish embryos. Samples were prepared and images were recorded by Marcel Sobucki in Lennart Hilbert's laboratory, images were analyzed by Lennart Hilbert.</p> <p>To analyse date data, the raw image data are first extracted into MatLab-native files using the <a href="https://zenodo.org/api/files/2f2192f4-a05c-4969-ba0a-4f235b837709/MultiPosition_extraction_nd2.m">MultiPosition_extraction_nd2.m</a> script. The actual analysis is then carried out using the <a href="https://zenodo.org/api/files/2f2192f4-a05c-4969-ba0a-4f235b837709/ClusterAnalysis.m">ClusterAnalysis.m</a> script. Example microscopy images were produced using the <a href="https://zenodo.org/api/files/2f2192f4-a05c-4969-ba0a-4f235b837709/ExampleImages.m">ExampleImages.m</a> script. The extracted data can be reviewed using the <a href="https://zenodo.org/api/files/2f2192f4-a05c-4969-ba0a-4f235b837709/ReviewExtractedStacks.m">ReviewExtractedStacks.m</a> script.</p> <p>Additional data needed to be stored in an extra repository due to size limitations: <a href="https://doi.org/10.5281/zenodo.8028508">https://doi.org/10.5281/zenodo.8028508</a></p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.