Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
3,696
datasets available to search
ShareScore release 0.9.0
Dataset results
3,696 results for “Reference”
Cochrane DTA Reference Dataset
<p>Dataset described in <em>Data Extraction and Synthesis in Systematic Reviews of Diagnostic Test Accuracy: A Corpus for Automating and Evaluating the Process, </em>AMIA Annual Symposium Proceedings 2018.</p>
SSUsearch reference dataset
<p>This is the reference databases for SSUsearch, including the files below. If you want to updated version of SILVA, please look into the <strong>"readme"</strong> file.</p> <p>Ali_template.ssu.silva.fasta: alignment template for mothur.align<br> Copy_db_cc.ssu.copyrighter.txt: SSU rRNA gene copy DB # in copyrighter<br> Gene_db_cc.ssu.greengene_rep.fasta: SSU rRNA gene referecne DB in Greengene<br> Gene_db.ssu.silva_108_rep.fasta: SSU rRNA gene ref DB in SILVA<br> Gene_model_org.ssu.fasta: E.coli SSU rRNA gene sequence, 16s_ecoli_J01695.<br> Gene_tax_cc.ssu.greengene_rep.tax: SSU rRNA gene taxon ref DB in Greengene<br> Gene_tax.ssu.silva_108_rep_family.tax: SSU rRNA gene taxon ref DB in SILVA<br> Hmm.ssu.hmm: 2 hmms for bac + arc and euk</p> <p> </p> <p>Please cite the original paper: </p> <p>Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes</p> <p>Jiarong Guo, James R. Cole, Qingpeng Zhang, C. Titus Brown, James M. Tiedje</p> <p>Appl. Environ. Microbiol. Dec 2015, 82 (1) 157-166; DOI: 10.1128/AEM.02772-15</p>
Viral reference data for PathoLive
<p>Viral reference data for PathoLive including GI numbers and taxonomic information per sequence. Data taken from the viral part of the NCBI RefSeq downloaded on 2016-07-06.</p>
hg19KIndel: Ethnicity normalized human reference genome
<p>The above zip files (hg19KIndel_Resource.zip) contains the following folders. Specific Details about how each file within the below mentioned folders were derived are present in individual README files for each folder</p> <p>1) hg19Kindel</p> <p> -hg19Kindel.fa - fasta file representing the modified assembly</p> <p>2) Gene Annotations</p> <p> -hg19_refGene.txt - RefSeq gene annotation downloaded from UCSC table browser (for hg19)<br> -hg19Kindel_refGene.txt - RefSeq gene annotation corresponding to hg19Kindel Genome</p> <p>3) SnpEff_Database</p> <p> -snpEffectPredictor.bin - Binary file used by SnpEff to annotate variants</p> <p>4) LiftOver_and_Chain_File</p> <p> -hg19Kindeltohg19.over.chain - UCSC chain file for lifting coordinates from hg19Kindel to hg19<br> -convert_cordinates_vcf.py - Python script to liftover variants(vcf) (only point coordinates) called on hg19Kindel to hg19 coordinate frame</p> <p> </p>
References to Qing China Technology and Industry in Finnish Technical Journals 1880-1912
<p>Dataset providing references to the Finnish and Swedish technological journal articles 1880-1912 used for analysis in the peer-reviewed journal article: Mats Fridlund & Matti La Mela, ”Between Technological Nostalgia and Engineering Imperialism: Digital History Readings of China in the Finnish Technoindustrial Public Sphere 1880-1912”, <em>Tekniikan Waiheita</em> 37 (2019):1"</p>
STAR_reference_chr22
<p>STAR index of chr22 for cwl tool test</p>
Newspaper references to Irish language Court Interpreters 1796-1922
<p>This file consists of a corpus made up of transcriptions of newspaper extracts that mention Irish language court interpreters. Much of the information was used in <em>Irish Speakers, Interpreter and the Courts</em> (2019) by Mary Phelan, published by Four Courts Press and the Irish Legal History Society.</p>
DIY Particle Detector: reference measurement data
<p>This dataset is released along the data analysis source code of <a href="https://github.com/ozel/DIY_particle_detector">github.com/ozel/DIY_particle_detector</a> and <a href="https://doi.org/10.5281/zenodo.3361755">10.5281/zenodo.3361755</a>.</p> <p>Since the binary files are large, they are not part of the github archive (but stored via github's LFS feature for large files).</p> <p>The files are in python's pickle format, created using python version 3.6.5, pandas module version 0.24.1 and numpy module version 1.14.3. </p> <p>The measurements are taken with the diode-based detector design detailed in the repository above besides the following two files, which are recorded with iPadPix (<a href="https://doi.org/10.1088/1748-0221/11/11/C11032">https://doi.org/10.1088/1748-0221/11/11/C11032</a>) for comparison:<br> 3hoursRadonBalloon_2019-02-10_14-43-21___2321___2-56.pkl<br> KCL_block_bare_2019-02-11_20-54-41___1083___1-03.pkl</p> <p> </p> <p> </p> <p> </p>
ATCC 20 Composite Reference Genome
<p>This is a reference containing the genomes matching the <a href="https://www.atcc.org/products/all/MSA-1002.aspx">ATCC 20 Strain</a> reference material. It includes the following organisms:</p> <ul> <li>Acinetobacter baumannii ATCC 17978</li> <li>Bacillus cereus ATCC 10987</li> <li>Bacteroides vulgatus ATCC 8482</li> <li>Bifidobacterium adolescentis ATCC 15703</li> <li>Clostridium beijerinckii ATCC 35702</li> <li>Cutibacterium acnes subsp. defendens ATCC 11828</li> <li>Deinococcus radiodurans R1</li> <li>Enterococcus faecalis OG1RF</li> <li>Escherichia coli str. K-12 substr. MG1655</li> <li>Helicobacter pylori 26695</li> <li>Lactobacillus gasseri ATCC 33323 = JCM 1131</li> <li>Neisseria meningitidis MC58 serogroup: B source</li> <li>Porphyromonas gingivalis ATCC 33277</li> <li>Pseudomonas aeruginosa PAO1</li> <li>Rhodobacter sphaeroides ATCC 17029</li> <li>Schaalia odontolytica ATCC 17982</li> <li>Staphylococcus aureus subsp. aureus USA300 FPR3757</li> <li>Staphylococcus epidermidis</li> <li>Streptococcus agalactiae 2603V/R</li> <li>Streptococcus mutans UA159</li> </ul>
EEG data for generating reference rdFC patterns and sample rdFC patterns
<p>The correlation structure embedded in scalp EEG data is explored through three representative reference rdFC patterns which can be generated from the data in referenceEEG.txt. Three sample EEG data files, each of a triplet of electrodes, serve as examples for comparison with the reference rdFC patterns.</p>
Fig. 12 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 12. Hexactinellid and demosponge spicules from the Kowala Quarry, set H−3, earliest Famennian, sample Kw−156, all × 38. A, B, E. Anchoring spicules of hexactinellids. C, D, F–H.?Dermal pentactines. I. Hexactine. J. Undetermined demosponge spicule. All SEM micrographs.
Fig. 11 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 11. Demosponge (including lithistid) and hexactinelid spicules from Kowala Quarry, set H−2, late Frasnian, sample Ky−3. A, B. Strongyloxeas, × 70. C. Strongyl, × 70. D. Stauractin, × 54. E. Pentactine, × 36. F, J, M. Desmas (dendroclones) of antahspidellid lithistids, × 70. G. Tetraxon, × 70. H. Tetraxon, × 54. I. Hexactine, × 36. K, L. Fragments of astylospongiid lithistid skeleton, × 27 All SEM micrographs.
Fig. 10 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 10. Hexactinellid and lithistid spicules from Kowala Quarry, set H−2, late Frasnian. A, H, E. Hexactines (A × 43; H × 49; E × 75). B.?Stauractine, × 21. G. Dermal pentactine, × 64. I. fragments of fused skeleton of hexactinosan sponge, × 21. J. Fragment of fused skeleton of astylospongiid lithistid, × 32. C, D, F. dermal spicules (strongly modified pentatcines) of docodermatid hexactinellid. (D × 13; C × 15; F × 17). All SEM micrographs.
Fig. 8. Entactiniid radiolarians from the Kowala Quarry, set H−4 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 8. Entactiniid radiolarians from the Kowala Quarry, set H−4, early Famennian (Pa. crepida Zone), sample KM−1, all × 75. A–E. Haplentactinia aff. flagelifera. F. Polyentactinia cf. rudihispida. All SEM micrographs.
Fig. 9 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 9. Entactiniid (A–F) and albaillellid (G, H) radiolarians from the Kowala Quarry, set H−3, earliest Famennian (Middle Pa. triangularis Zone), sample Kw−154, all × 75. A. Trilonche grandis. B. Stigmospherostylus crustescens. C–E. Trilonche guangxiensis. F. Polyentactinia tenera. G, H. Albaillella sp. All SEM micrographs.
Fig. 7. Entactiniid radiolarians from the Kowala Quarry, set H−3 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 7. Entactiniid radiolarians from the Kowala Quarry, set H−3, earliest Famennian (Middle Pa. triangularis Zone), sample Kw−154, all × 75. A–C, E. Haplentactinia cf. rhinophyusa. D. Spongentactinella sp. F, G. Haplentactinia cf. inaudita. All SEM micrographs.
Fig. 4. Entactiniid radiolarians from the Kowala Quarry, set H−3 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 4. Entactiniid radiolarians from the Kowala Quarry, set H−3, earliest Famennian (Middle Pa. triangularis Zone), sample Kw−154, all × 150 except J × 240. A–C. Astroentactinia stellaepolus. D. Stigmospherostylus diversita. E, G. Astroentactinia stellata. F. Astroentactinia cf. crassata. H. Stigmospherostylus cf. micula. I, J. Helioentactinia cf. perjucunda.
Fig. 3 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 3. Radiolarian−spiculite facies, set H−3, Frasnian–Famennian boundary beds at Kowala quarry, Poland (see Figs. 1C, D and 2; Racki 1999: fig. 2). A. Field photo of a laminated (marginally−agraded) limestone bed with black bedded chert; arrowed is a lighter diagenetically unaffected band. B. Radiolarian−spiculite limestone packstone (sample Kw−154), with mostly incipiently neomorphozed micritic matrix and numerous pyrite aggregations in the upper part.
Fig. 2 in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 2. Micropalaeontological characteristics of the upper Frasnian and Frasnian–Famennian passage at Kowala, based on the eastern quarry wall section + from 1991 (section Kw). The material obtained from marly−shaly samples, supplemented by few conodont samples and thin sections for the unit H−3. Productive radiolarian (R) and spicule (S) samples studied (see Fig. 3 and Table 2) are arrowed. 1, tentaculitoids; 2, entomozoids; 3, large−sized palynomorphs; 4, goniatites; 5, ichtyolithes; 6, palmatolepid conodonts; 7, polygnathid conodonts; 8, ramose conodont elements; 9, phyllocarid remains; 10, benthic ostracods; 11, nanicellid foraminiferans; 12, sponge spicules; 13, rhynchonellid brachiopods;14, chonetid brachiopods; 15, lingulids; 16, phosphatized burrow fills and pellets; 17, agglutinated foraminiferans; 18, icriodontid conodonts; 19, echinoderm remains; 20, ramose fossils (a, amphiporid stromatoporoids; b, others [fragmented?auloporids]); 21, sphaerical microfossils (?mostly calcispheroids).
Fig. 1. A, B in Siliceous biota (radiolarians and sponges) and the Late Devonian biotic crisis: The Polish reference
Fig. 1. A, B. Location of the Kowala basin succession in Poland (A) and Holy Cross Mountains (B; see details in Racki 1993). C. Composite lithological section of the Late Devonian strata at Kowala (modified after Szulczewski 1996: fig. 8), the reference succession showing environmental evolution typical of intermittently drowned shelf from reef (units A–C) to slope (D–G) to intrashelf basin (H–L). Three sampled radiolarian−sponge intervals are arrowed. D. Sedimentary record of eustatic, anoxic and tectono−volcanic events around the Frasnian–Famennian boundary, with emphasis on selected biotic markers. Note blooms of siliceous biota, thought as promoted mostly by submarine exhalative volcanism paired with tectonically−driven shallowing, and a cooling pulse (see Racki 1999; Racki et al. 2002).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.