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6,861 results for “Animals”
Rapid establishment of species barriers in plants compared to animals
<p><strong>fasta_sequences.zip: </strong>Plant datasets used for demographic inference in the "plants versus animals" comparison.<br>Each archive corresponds to a genus, with the exception of <em>Howea</em> and <em>Linospadix</em>, which are treated as a single dataset.<br>These archives contain at least one "<em>genus</em>_populations.fasta" file corresponding to the individual genotypes used for inferences.<br>Where required, there is also a "<em>genus</em>_reference.fasta" file corresponding to the reference used for read mapping.<br>All references used are coding sequences (CDS).</p> <p><strong>figures.zip: </strong>Figures of the article, produced by the script <em>scripts/figures_plants_animals.R</em> using data from <em>results/</em></p> <p><strong>results.zip:</strong> Include information about the different species pairs in plants and animals, such as the statistics used for demographic inferences, the results of these inferences, geographic distances, and the outcomes of the goodness-of-fit tests.</p> <p><strong>results_selfing_estimates_per_species.zip: </strong>Selfing rate estimates for surveyed plant species.</p> <p><strong>scripts.zip:</strong> R-script used to perform statistical analyses on data from the <em>results.zip</em> file and to generate the main and supplementary figures.</p> <p><strong>QuIBL_DILS.zip:</strong> Scripts, simulated datasets, and figures for the QuIBL and DILS comparison.</p> <p><strong>Auxiliary_Tables.ods: </strong>Auxiliary tables providing supplementary data and results supporting the analyses presented in the manuscript, including demographic inference statistics, selfing rate estimates, and geographic distance measurements</p> <p> </p> <p> </p> <p> </p>
Dataset and code: Mammals in the city and animal personality
Open the record for dataset details and reuse information.
Animal Diversity Web: ADW Traits & image objects from Quaardvark Tool
This morphometry and life history dataset for size characteristics of birds is from undergraduate students who contributed to the Animal Diversity Web. Traits and images are harvested using ADW__s Quaardvark data download tool.<p></p>
Gigantic animal cells suggest organellar scaling mechanisms across a 50-fold range in cell volume
<p>Across the tree of life, cell size varies by orders of magnitude, and organelles scale to maintain cell function. Depending on their shape, organelles can scale by increasing volume, length, or number. Scaling may also reflect demands placed on organelles by increased cell size. The 8,653 species of amphibians exhibit diverse cell sizes, providing a powerful system to investigate organellar scaling. Using transmission electron microscopy and stereology, we analyzed three frog and salamander species whose enterocyte cell volumes range from 228 to 10,593 μm3. We show that the nucleus increases in radius while the mitochondria increase in total network length; the endoplasmic reticulum and Golgi apparatus, with their complex shapes, are intermediate. Notably, all four organelles increase in volume proportionate to cell volume. This pattern suggests that protein concentrations are the same across amphibian species that differ 50-fold in cell size, and that organellar building blocks are incorporated into more or larger organelles following the same "rules" across cell sizes, despite variation in metabolic and transport demands. This conclusion contradicts results from experimental cell size increases, which produce severe proteome dilution. We hypothesize that salamanders have evolved the biosynthetic capacity to maintain a functional proteome despite a huge cell volume. </p>
Phase spiral animations for Hunt et al. (2021) and Hunt et al. (2024)
<p>Animations of the evolution of model M1 from Hunt et al. (2021), a generic merger of a dwarf galaxy into a high-resolution, highly stable disc galaxy. The animations are provided as mp4 (recommended), and as gifs if your media player does not support the mp4 codec.</p> <p>M1-Morphology+kinematics:</p> <ul> <li>Time evolution of Figure 4 from Hunt et al. (2021) showing the face-on (left-hand and centre columns) and edge-on (right-hand column) view of the disc coloured by number count (upper left panel and right-hand column), mean radial velocity (upper centre), mean vertical position (lower left), and mean vertical velocity (lower centre) for Model M1. The dwarf particles are only included in the right-hand column, but its position is marked with a green dot in the face-on panels.</li> </ul> <p>M1-AASpiral:</p> <ul> <li>Time evolution of Figure 7 from Hunt et al. (2021) showing the phase spirals shown across the face of Model M1 in 1 × 1 kpc bins from X, Y = −15 to 15 kpc. Note that the global vertical spiral is visible owing to the offset of the individual phase spirals from (vz, z) = (0, 0) and the vz axes have been re-scaled to compensate for the change in velocity dispersion with radius (see the text in Hunt et al. 2021).</li> </ul> <p>M1-vertical-radial:</p> <ul> <li>Time evolution comparing the z-vz spirals (left) from Figure 7 of Hunt et al. (2021) as shown in M1-AASpiral, and the R-vR phase spirals (right) of Hunt et al. (2024).</li> </ul>
Enhanced mTORC1 signaling and protein synthesis in pathologic alpha-synuclein cellular and animal models of Parkinson's disease
<p>Pathologic alpha-synuclein plays an important role in the pathogenesis of alpha-synucleinopathies such as Parkinson's disease (PD). Disruption of proteostasis is thought to be central to pathologic alpha-synuclein (alpha-syn) toxicity; however, the molecular mechanism of this deregulation is poorly understood. Here we report that pathologic alpha-syn activates the mechanistic target of rapamycin (mTOR) complex 1 (mTORC1) leading to enhanced mRNA translation via binding tuberous sclerosis protein (TSC) 2 and destabilizing the TSC1-TSC2 complex. Genetic and pharmacologic inhibition of mTOR and protein synthesis rescue the dopamine neuron loss, behavioral deficits, and aberrant biochemical signaling in the alpha-syn preformed fibril (PFF) and Drosophila alpha-syn transgenic models of pathologic alpha-syn induced degeneration. Our findings establish a potential molecular mechanism by which pathologic alpha-syn activates mTORC1 leading to enhanced protein synthesis and concomitant neurodegeneration in PD.</p>
Data associated with: Recording animal-view videos of the natural world using a novel camera system and software package
<p>Data associated with Vasas V, Lowell MC*, Villa J*, Jamison QD*, Siegle AG*, Katta PVR*, Bhagavathula P*, Kevan PG, Fulton D, Losin N, Kepplinger D, Salehian S, Forkner RE, Hanley D (2023) Recording animal-view videos of the natural world using a novel camera system and software package. PLoS Biology. DOI: 10.1371/journal.pbio.3002444</p>
Animal disease data complementing the European Union One Health 2022 Zoonoses Report
<p>This dataset contains the mandatory annual data reported for bovine tuberculosis and for bovine and ovine and caprine brucellosis based on Directive 2003/99.</p>
Supplementary animations for "Dynamical friction in self-interacting ultralight dark matter"
<p>Animations to supplement "Dynamical friction in self-interacting ultralight axion dark matter", <em>Phys.Rev.D</em> 109 (2024) 6, 063501.</p> <p>These animations are also available from <a href="https://www.youtube.com/playlist?list=PLHrf0iQS5SY6COihRVYJkz31smUyDvFwW">https://www.youtube.com/playlist?list=PLHrf0iQS5SY6COihRVYJkz31smUyDvFwW</a>.</p>
Wine Cellar House animation
It represents the horizontal extension of the cellar by the addition of the kitchen and the subdivision of the sleeping area. In all the observed cases, the kitchen and the rooms corresponded to transversal separated compartments. These spaces were created by detachable wooden partitions, segregating the new functions from the areas of wine and liquor processing. This development represents a significant importance of the wine production for the family income, and therefore a bigger investment in the size and quality of the construction. In most of the cases the building also accommodates the tank and press mechanism, which implies bigger dimensions. [Learn More](http://esg.pt/3dpast/platform) Source: Objaverse 1.0 / Sketchfab
Animation flags | Let there be peace | Я за мир!
The peace animation flags. Peace symbols. One material. Considering the situation in the world, I want to say that let there be peaceful solutions to any disagreements! *I would appreciate if you download this model for use in a project and you left a comment telling me where you used it. Thanks!* | Анимированные флаги мира. Пацифик. Один материал. Учитывая ситуацию в мире, хочу сказать, что я за мирные решения любых разногласий! *Я буду благодарна, если вы скачаете эту модель для использования в проекте и оставите комментарий, где вы ее использовали. Спасибо!* Source: Objaverse 1.0 / Sketchfab
VR - Enniscorthy Carving Animated
Note: The VR aspect will only work with VR headsets or on a Mobile device with a VR app installed. The history of halberdier posed more questions than answers, and it was our intention to attempt to ascertain its origins, date, and best methods for conservation. Following initial analysis, it became obvious that the wall art has considerably more detail than originally thought e.g. buttons on its 'tunic', cheeks and a mouth, and hachured clothing. It is now obvious that he is more than a mural, his clothing is in fact engraved, and with some considerable skill, but again, further consideration will have to be given to comparing him to other sites both nationally and internationally. Dr. Sherlock's report is available to download [here](https://docreader.reciteme.com/doc/url?q=http://enniscorthycastle.ie/wp-content/uploads/2022/02/Enniscorthy-Castle-Report-2012-R-Sherlock.pdf). ![]() Source: Objaverse 1.0 / Sketchfab
Naga-enthroned Buddha (non-animated)
Bronze Cambodian Naga-enthroned Buddha, 12th - 13th C CE, now in the collection of the Minneapolis Institute of Art. This is the static version of the model - the animated version is here: https://skfb.ly/6RFLR From the object's description on artsmia.org: *"This small bronze represents a transcendent Buddha, who is seated on the coils of a seven-headed snake. Under Jayavarman VII (1181-1218), tantric Buddhism became the state religion, as opposed to a form of Buddhism that stressed the historical events in the Buddha's life. The naga (snake) enthroned Buddha represented the ideal form of an enlightened being, and also represented the king himself."* More information about the object here: https://collections.artsmia.org/art/8146/naga-enthroned-buddha-cambodia Source: Objaverse 1.0 / Sketchfab
Ogre Animation
Testing a set of programs to make face animations feel best as possible. For more like this follow my instagram page :) instagram.com/diegosalazarmurillo3d Source: Objaverse 1.0 / Sketchfab
Stirrup vessel in form of an animal
Stirrup vessel in the Bonn Collection of the Americas at the University of Bonn (Inv. Nr. Hn34) * Object: Stirrup vessel in form of an animal, maybe a jaguar, polychrome painting. * Place of origin: Peru, coast * Acquisition: 2013 * Collection: Teddy Hahn * Hardware: Nikon D7500, Nikon 40 mm macro * Software: RealityCapture, Substance Designer, Blender Source: Objaverse 1.0 / Sketchfab
Model of the Watt Steam Engine with animation
Eugène Bourdon (1808–1884) – artist / maker ca. 1835, Paris A nineteenth-century model of the Watt steam engine. It allowed to demonstrate the principle of the steam engine's operation by mechanically turning a flywheel and connecting the machinery to an external source of steam or compressed gas. For more images and further information, visit: https://muzea.malopolska.pl/en/objects-list/2763 Inventory number: 4988; 993/V Localisation of the physical object: Jagiellonian University Museum, Collegium Maius, Kraków, Poland Digitalisation: Regional Digitalisation Lab, Małopolska Institute of Culture in Kraków, Poland; "Virtual Museums of Małopolska" Project 3D model & animation by Stanisław Ogarek as a diploma work at Tischner European University. Source: Objaverse 1.0 / Sketchfab
Well - Kuyu (Rotation Animation)
Texture Link: https://drive.google.com/folderview?id=0B4_LXY86gsHpMXo4ZnRkVV9DVFE&usp=sharing Source: Objaverse 1.0 / Sketchfab
Torsion Pendulum Clock - Animation
This object is a reproduction of the famous torsion pendulum clock. Mesh update with animation 21/11/2021. Texture 2048x2048. 2 Slot materials: one for the mesh and one for the glass. Royalty Free. Source: Objaverse 1.0 / Sketchfab
Transylvania Building Culture (animated)
There are however some differences between the morphology of the villages. The residential buildings of the Saxon villages of Transylvania are decidedly rural, and the distribution of domestic space is closely tied to the relationship with agricultural production and crop cycles. Typically, dwellings were situated at the end of each plot, overlooking the street with an entrance delimiting and closing off the property. The elongated internal courtyards, separated by the main door, show a clear "introverted" sequence of spaces, usually divided into five major areas. The first strip of the plot is occupied by the family home or the residential nucleus strictly speaking. [More info](https://esg.pt/3dpast/platform/transylvania) Source: Objaverse 1.0 / Sketchfab
Terracotta figure of animal. Camarina, Sicily
Terracotta figure of animal. From the site of Camarina, Ragusa, Sicily, Italy. Classical Age. 5th-4th centuries BC. In the collection of the Museo Archeologico Ibleo di Ragusa. Processed in Reality Capture from 339 images. GDH ID and Catalog No. 3780 Citation: We want to publicly acknowledge the collaboration of the ""Soprintendenza per i Beni Culturali ed Ambientali di Ragusa"" and the ""Parco Archeologico di Kamarina e Cava d'Ispica"". Our most sincere thanks to General CC, retired, Renato Scuzzarello, the archaeologist Dr. Saverio Scerra, the architect Giorgio Battaglia, the restorer Stefania Patti Occhipinti and the archaeologists Veronica Falcone and Alessandra D'Izzia, the custodians of Parco Archeologico Marco Giardina, Giovanna Brugaletta e Rosario Licitra" Source: Objaverse 1.0 / Sketchfab
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.