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1,600 results for “input”
Synthetic seismogram input files for various Mars compositions
<p>Input files for qseis (DOI 10.5281/zenodo.6790788) to create synthetic seismograms for various Mars mantle compositions (Mg# 92, 81, 77, 73). Calculated along isentropy initiated at 100 km depth corresponding to 1750 K. Replaces previous input files (DOI 10.5281/zenodo.6791103).</p>
FRACTESUS_UC_A533B LUS_T0_MCT_input
<p>Fractesus project. Fracture test mini-CT. Raw data A533B LUS. UC.</p>
Bearing capacity semi-empirical methods inputs for optimization
<p>These datasets presents inputs for bearing capacity prediction methods. These methods are four well-known semi-empirical models for predicting bearing capacity of piles. The data was collected from the works of Lobo (2005), Vianna (2000) and Jr. (1988) and includes load tests and SPT measures taken from severam Brazilian regions. </p> <p>The suffix 'DQ' and 'MH', 'Av' and 'Tx' represents which method this input was obtained from, corresponding respectively to Decourt and Quaresma (1978) and Meyerhof (1983).</p> <p>The columns indexes represents:</p> <p>N_pile - Pile number (for reference);<br> N_l - SPT result for the pile lenght;<br> N_p - SPT result for the pile tip<br> L - pile lenght;<br> D - pile diameter;<br> U - pile perimeter;<br> A - pile section area<br> Qu - Pile bearing capacity, obtained through NBR 6122 load test.<br> <br> When using this dataset, please cite the following paper:</p> <p>//<a href="http://soilsandrocks.com/sr-2021-074921">soilsandrocks.com/sr-2021-074921</a></p> <p>DOI: 10.28927/SR.2021.074921</p>
Supplementary Information for "Modeling the circular economy in environmentally extended input–output: A web application"
<p>Supplementary Information for "Modeling the circular economy in environmentally extended input–output: A web application"</p> <p>Annex I: This supporting information provides the software review for native and web-based tools that could be used for Circular Economy and environmental analysis.</p> <p>Annex II: This supporting information provides the use-case result analysis.</p>
Input and Output dataset for "Robustness tests for an optical time scale"
<p>The uploaded dataset includes the data reported in the figures of the pubblication Robustness tests for an optical time scale (V Formichella et al 2022 Metrologia 59 015002, DOI 10.1088/1681-7575/ac3801, Euramet Pubblication REPRef-2989)</p>
Circadian rhythm entrainment of the jewel wasp, Nasonia vitripennis, by antagonistic interactions of multiple spectral inputs
<p>Circadian light entrainment in some insects is regulated by blue-light sensitive cryptochrome (CRY) protein that is expressed in the clock neurons, but this is not the case in hymenopterans. The hymenopteran clock does contain CRY, but it appears to be light-insensitive. Therefore, we investigated the role of retinal photoreceptors in the photic entrainment of the jewel wasp <em>Nasonia</em> <em>vitripennis</em>. Application of monochromatic light stimuli at different light intensities caused phase shifts in the wasp's circadian activity from which an action spectrum with three distinct peaks was derived. Electrophysiological recordings from the compound eyes and ocelli revealed the presence of three photoreceptor classes, with peak sensitivities at 340 nm (ultraviolet), 450 nm (blue), and 530 nm (green). An additional photoreceptor class in the ocelli with sensitivity maximum at 560–580 nm (red) was found. Whereas a simple sum of photoreceptor spectral sensitivities could not explain the action spectrum of the circadian phase shifts, modelling of the action spectrum indicates antagonistic interactions between pairs of spectral photoreceptors, residing in the compound eyes and the ocelli. Our findings imply that the photic entrainment mechanism in <em>N</em>. <em>vitripennis</em> encompasses the neural pathways for measuring the absolute luminance as well as the circuits mediating colour opponency. </p>
Elucidating the Magma Plumbing System of Ol Doinyo Lengai (Natron Rift, Tanzania) Using Satellite Geodesy and Numerical Modeling; Model input and output files
<p>These are the model input and output associated with the manuscript "Elucidating the Magma Plumbing System of Ol Doinyo Lengai (Natron Rift, Tanzania) Using Satellite Geodesy and Numerical Modeling" in consideration for publication in the Journal of Volcanology and Geothermal Research.</p>
TreeAlign Input and Output datasets (initial submission)
<p>This repository provides the processed data necessary to reproduce the results for the initial TreeAlign paper submission. </p> <p>This includes the following:</p> <ul> <li>Single cell whole genome sequencing (scDNA) <ul> <li>Copy number profiles</li> <li>B allele frequency profiles</li> <li>phylogenetic trees computed with HDBSCAN</li> <li>benchmarking results vs other methods</li> </ul> </li> <li>10X single cell RNA sequencing (scRNA) <ul> <li>count matrices</li> <li>reference and total read counts at heterozygous SNPs</li> <li>meta data</li> </ul> </li> <li>TreeAlign output <ul> <li>Clone assignment for expression profiles</li> <li>p(k) scores</li> <li>p(a) scores</li> </ul> </li> </ul>
input data for topo_drag.f90 using GFDL dynamical cores
<p> Use XXX=150 for T85, and XXX=300 for T42. Remember to change the file names in the source code or rename these input files accordingly.</p>
Input data for oktoberfest
<p>Example input data for Oktoberfest <a href="https://github.com/wilhelm-lab/oktoberfest">https://github.com/wilhelm-lab/oktoberfest</a> </p>
Proof of Concept database with inputs and outputs of the Master thesis: Analyzing Software Delivery Performance behavior in popular Open Source Software Projects on a Release timeline basis through delivery metrics
<p>The software has become one of the main assets to deliver services today. Thus, software delivery has been dealing with a competitive and dynamic environment where the demand for faster and more assertive deliverables, called here Releases, only increases. Agile development methods emerged helping to accelerate software delivery, embracing industry and open source community. Since then, the software delivery frequency has expanded and improved bringing more adopters of rapid release cycles to reduce their time-to-market. However, using only rapid releases can not be enough as measuring software delivery can answer essential questions, like how software delivery is happening and how it should be. Some approaches for measuring software delivery appeared such as Software Delivery Performance (SDP) where software delivery is measured as a consequence of capabilities evolution. Popularity in Open Source Software Projects (OSSP) means that a project is mature enough in the community to fit the software demand and, therefore, is likely to be ready to be measured through a software delivery approach like SDP. In light of it, this work offers means to analyze SDP behavior in popular Open Source Software Projects on a Release timeline basis through delivery metrics. The results demonstrated that popularity is efficient filtering, as it improves the OSSP delivery, supporting the work's reliability and accuracy. The source code and methodology are published as a replication package to encourage reproducibility and future research.</p>
Data from: No evidence for sex differences in the electrophysiological properties and excitatory synaptic input onto nucleus accumbens shell medium spiny neurons
<p>Sex differences exist in how the brain regulates motivated behavior and reward, both in normal and pathological contexts. Investigations into the underlying neural mechanisms have targeted the striatal brain regions, including the dorsal striatum and nucleus accumbens core and shell. These investigations yield accumulating evidence of sexually different electrophysiological properties, excitatory synaptic input, and sensitivity to neuromodulator/hormone action in select striatal regions both before and after puberty. It is unknown whether the electrical properties of neurons in the nucleus accumbens shell differ by sex and whether sex differences in excitatory synaptic input are present before puberty. To test the hypothesis that these properties differ by sex, we performed whole-cell patch-clamp recordings on male and female medium spiny neurons (MSNs) in acute brain slices obtained from prepubertal rat nucleus accumbens shell. We analyzed passive and active electrophysiological properties, and miniature EPSCs (mEPSCs). No sex differences were detected; this includes those properties, such as intrinsic excitability, action potential after hyperpolarization, threshold, and mEPSC frequency, that have been found to differ by sex in other striatal regions and/or developmental periods. These findings indicate that, unlike other striatal brain regions, the electrophysiological properties of nucleus accumbens shell MSNs do not differ by sex. Overall, it appears that sex differences in striatal function, including motivated behavior and reward, are likely mediated by other factors and striatal regions.</p>
LULC input and CLM5 carbon output "Chemistry-albedo feedbacks offset up to a third of forestation's CO2 removal benefits."
<p>Land use land cover (LULC) files for the CESM and UKESM simulations performed for the study "Chemistry-albedo feedbacks from reforestation reduce climate benefits and crop yields. The input data was processed to make it compatible for UKESM as described in Weber et al (2022) https://doi.org/10.5194/egusphere-2022-748.</p>
Ulysses Fossae Craterstats Input
<p>.diam input files from CraterTools (Kneissl et al., 2011) for use in Craterstats II (Michael, 2013). Data consists of crater diameters for all counted craters in Ulysses Fossae, Mars</p>
Input data for Reversible Unwrapping Algorithm for Constant-Pressure Molecular Dynamics Simulations
<p>As described in the main text, here is the input data used for simulation, as well as analysis directories. The archive was generated in my project folder with "tar --exclude=*trr --exclude=pbctools --exclude=qtwrap --exclude=old* --exclude=*npz --exclude=*pdf --exclude=*png --exclude=*ppm --exclude=*dcd* --exclude=*xtc --exclude=*slurm* --exclude=core* --exclude=*sh --exclude=*xvg --exclude=*out --exclude=*git* --exclude=*edr --exclude=*log --dereference -zcvf kulke-$(date +"%F").tar.gz data figures scripts Simulations". Big data and trajectory files were excluded to keep the archive size small. The archive includes all necessary files to reproduce the simulations, analysis and figures for the publication.</p>
Data set for the article "One-time freeze-thawing or carbon input events have long-term legacies in soil microbial communities"
<p>The following are data and code used for statistical analysis and figure plotting in the manuscript</p> <p>Gorka et al. (2023) "One-time freeze-thawing or carbon input events have long-term legacies in soil microbial communities", Geoderma, <a href="https://doi.org/10.1016/j.geoderma.2023.116399">https://doi.org/10.1016/j.geoderma.2023.116399</a></p> <p>It contains the following files:</p> <ol> <li>Microbial PLFA and NLFA analysis files (contained in <em>Fatty_acid_analysis.zip</em>) <ul> <li>PLFA and NLFA abundance data, in nmol C g<sup>-1</sup> dw (in <em>fatty_acid_data.csv</em>)</li> <li>Taxonomic specificities of fatty acids, needed for R-script to run (in <em>phylum.csv</em>)</li> <li>An R Script reproducing the statistical analysis, figure plotting and output for tables, as used in the manuscript (<em>Fatty_acid_analysis.R</em>)</li> </ul> </li> <li>Soil C and N stoichiometry analysis files (contained in <em>TOC_TN_analysis.zip</em>) <ul> <li>Dissolved organic C (DOC), total dissolved N (TN), and C and N in microbial biomass (Cmic, Nmic) abundance data, in mg g<sup>-1</sup> dw (in <em>toc_tn_data.csv</em>)</li> <li>An R Script reproducing the statistical analysis, figure plotting and output for tables, as used in the manuscript (<em>TOC_TN_analysis.R</em>)</li> </ul> </li> </ol>
Evaluation Input Data For The Combined Approach to Query Answering in Horn-ALCHOIQ
<p>This repository contains the evaluation input data for the following publication:</p> <blockquote> <p>David Carral, Irina Dragoste, Markus Krötzsch: <strong>The Combined Approach to Query Answering in Horn-ALCHOIQ.</strong> Proceedings of the 16th International Conference on Principles of Knowledge Representation and Reasoning (KR 2018).</p> </blockquote> <p>Further details are described therein.</p> <p><strong>Contents</strong><br> The repository contains the following directories:<br> - <strong>input-files</strong>: The input files used in the evaluation, both for our method (using RDFox) and for Konclude reasoner.<br> These are partitions of LUMB, Reactome, Uniprot and UOBM ontologies.<br> - <strong>RDFox_dependency</strong>: The RDFox reasoner used in our prototype implementation</p>
Evaluation input for The Combined Approach to Query Answering in Horn-ALCHOIQ (Carral, Dragoste, Krötzsch, in proceedings of KR 2018)
<p>This repository contains the input data for the evaluation presented in the following publication:</p> <blockquote> <p>David Carral, Irina Dragoste, Markus Krötzsch: <strong>The Combined Approach to Query Answering in Horn-ALCHOIQ.</strong> Proceedings of the 16th International Conference on Principles of Knowledge Representation and Reasoning (KR 2018).</p> </blockquote> <p>Together with the materials in https://github.com/knowsys/eval-combined-approach-horn-alchoiq, the input data here provides all the necessary tools and datasets to reproduce the experiments described in this paper.<br> <br> Contents:<br> - <strong>input_files_for_Konclude </strong>- input data for the experiments that use Konclude tool<br> - <strong>input_files_for_RDFox </strong>- input data for the experiments that use our prototype (https://github.com/knowsys/eval-combined-approach-horn-alchoiq/tree/master/combined-approach), which is based on RDFox tool<br> - <strong>RDFox_dependency </strong>- the RDFox reasoner version used in our prototype implementation</p>
Input data and model implementation from: How do terrestrial wildlife communities respond to small-scale Acacia plantations embedded in harvested tropical forest?
<p class="MsoNormal"><span>To offset the declining timber supply from shifting towards more sustainable forestry practices, industrial tree plantations are expanding in tropical production forests. The conversion of natural forest to tree plantation is generally associated with loss of biodiversity and shifts toward more generalist and disturbance tolerant communities; but effects of mixed-landuse landscapes integrating natural and plantation forest remain little understood. Using camera traps, we surveyed the medium-to-large bodied terrestrial wildlife community across two mixed-land-use forest management areas in Sarawak, Malaysia Borneo which include areas dedicated for logging of natural forest and adjacent planted <em>Acacia</em> forests. We analysed data from a 25-wildlife species community using a Bayesian community occupancy model to assess species richness and species-specific occurrence responses to <em>Acacia</em> plantations at a broad scale, and to remote-sensed local habitat conditions within the different forest land-use types. All species were estimated to occur in both land-use types, but species-level percent area occupied and predicted average local species richness were slightly higher in the natural forest management areas compared to licensed planted forest. Similarly, occupancy-based species diversity profiles and defaunation indices for both a full community and only threatened and endemic species suggested the diversity and occurrence were slightly higher in the natural forest management areas. At the local scale, forest quality was the most prominent predictor of species occurrence. These associations with forest quality varied among species but were predominantly positive. Our results highlight the ability of a mixed-land-use landscape with small-scale<em> Acacia</em> plantations embedded in natural forest to retain terrestrial wildlife communities while providing an alternate source of timber. Nonetheless, there was a tendency towards reduced biodiversity in planted forests, which would likely be more pronounced in plantations that are larger or embedded in a less natural matrix.</span></p>
WRF/EMEP UK Workflow Inputs
<p>Example input data for a linear WRF/EMEP workflow.</p> <p>Setup is a small (60x90 grid cells, 30 vertical levels) domain over the UK, to be run for 4.75 days. Intermediate inputs are included so that different stages of the workflow can be run in isolation.</p> <p>The workflow scripts are available on WorkflowHub: <a href="https://workflowhub.eu/workflows/455">https://workflowhub.eu/workflows/455</a></p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.