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Fig. 2 in Close relationship of Plasmodium sequences detected from South American pampas deer (Ozotoceros bezoarticus) to Plasmodium spp. in North American white-tailed deer
Fig. 2. Phylogenetic relationships of Plasmodium sequences from Brazilian pampas deer within Haemosporidia. The tree was constructed using ∼3.4 kb of partial mitochondrial nucleotide sequences by the maximum likelihood (ML) method based on the GTR + I + G model. Bootstrap values (BV) for ML with 1000 replicates of ultrafast bootstrap analysis and Bayesian posterior probability (BPP) are indicated for each internal branch. The compositions of collapsed clades are Leucocytozoon (L. fringillinarium, L. majoris, and L. sabrasezi); Haemoproteus and Parahaemoproteus (Haemoproteus sp. jb1.JA27, Haemoproteus sp. jb2.SEW5141, and Parahaemoproteus vireonis); and bird, lizard and non-ungulate mammalian Plasmodium (P. gallinaceum, P. relictum, P. juxtinucleare, P. lutzi, P. floridense, P. mexicanum, P. falciparum, P. vivax, P. malariae, P. ovale, P. coatneyi, P. cynomolgi, P. fieldi, P. gonderi, P. inui, P. knowlesi, P. fragile, P. simiovale, P. simium, P. hylobati, P. reichenowi, P. billicollinsi, P. billbrayi, P. berghei, P. chabaudi, P. vinckei, and P. yoelii). Mitochondrial DNA sequences (including cytb and cox1) used in this study were listed in the Supplementary Table S1 of Templeton et al. (2016a). Nucleotide sequences of Plasmodium sp. in the North American white-tailed deer was based on Table S4 of Martinsen et al. (2016). Nucleotide positions containing indels or undetermined nucleotides, or those where the alignment was not clearly made were excluded. Nucleotide positions corresponding to the P. falciparum mtDNA (NC_002375.1) 974–1502, 1509–1576, 1578–1628, 1637–1678, 1698–1760, 1762–1769, 1774–1800, 1806–1831, 1834–1867, 1870–1909, 1914–2031, 2050–3474, and 3486–4444 were used. The length for the substitutions/site (0.04) is indicated.
Fig. 1 in Taxonomic review of the umbelliferous taxa Heracleum moellendorffii complex in Korea based on molecular phylogenies of nuclear ribosomal ITS sequences
Fig. 1. Cladograms inferred from the analysis of 29 nuclear ribosomal DNA ITS1 and ITS2 sequences from the genus Heracleum and an outgroup. (A) The strict consensus of two minimal length 138-step trees derived from equally weighted maximum parsimony analysis of combined nuclear rDNA ITS and 5.8S sequences (CI's with and without uninformative characters=0.91 and 0.89, respectively; RI=0.95). Numbers above nodes indicate the number of times a monophyletic group occurred in 100 bootstrap replicates; decay values are presented below. (B) The Maximum likelihood tree using a transition/tranversion rate ratio of 1.5. Branch lengths are proportional to the number of expected nucleotide substitutions per site. Boxes A, B, and C indicate clades H. maximum-moellendorffii, H. subbipinnatum, and H. sphondylium, respectively.
Fig. 11 Female reproductive system. a in Morphology, microanatomy and sequence data of Sclerolinum contortum (Siboglindae, Annelida) of the Gulf of Mexico
Fig. 11 Female reproductive system. a Semithin transverse section of the single ovary provided with small blood vessels (asterisk), containing oocytes, located between the oviduct and the ventral blood vessel. b Ultrastructure of the oviduct composed of an inner ciliated epithelium with apical junctional complexes (arrowhead) and a basal matrix (double arrowhead) surrounded by a myoepithelium. c Oocyte in the first meiotic prophase full of yolk granules and lipid droplets surrounded by a small blood vessel, blood lacuna and flattened follicle cells. d Oocyte in direct contact with blood lacuna ramifying into the oolemma (arrowhead). e Egg envelope consisting of extracellular matrix penetrated by microvilli. f Light microscopy of oocyte. Abbreviations: bc = bacteriocyte; bl = blood lacuna; bv = blood vessel; cc = coelomic cavity; ci = cilium; ep = epidermis; fc = follicle cell; ge = germinal vesicle; ld = lipid droplet; mc = myocytes; ml = body wall muscle layer; mm = median mesentery; ms = mesenchyme; mv = microvilli; ne = nucleolus; oc = oocyte; od = oviduct; vv = ventral blood vessel; y = yolk granule
Fig. 10 in Morphology, microanatomy and sequence data of Sclerolinum contortum (Siboglindae, Annelida) of the Gulf of Mexico
Fig. 10 Ultrastructure of epidermal multicellular glands of the opisthosoma. a Overview of epidermis, muscle layer with glandular duct (arrowhead) and glandular cell with rER in concentric circles, next to blood lacuna. b Glandular cell with large-lobed nucleus and nucleolus. c Detail of glandular epithelium showing apical junctional complex (arrowhead) and cytoplasm full of electron-light granules containing electron-dark patches. Abbreviations: bl = blood lacuna; ch = chaetae; cu = cuticle; gl = glandular lumen; ml = body wall muscle layer; mv = microvilli; ne = nucleolus; nu = nucleus; rER = rough endoplasmic reticulum
Fig. 7 in Morphology, microanatomy and sequence data of Sclerolinum contortum (Siboglindae, Annelida) of the Gulf of Mexico
Fig. 7 Semithin section series of the opisthosoma. a Opisthosomal septum consisting of an anterior circular and a posterior longitudinal myoepithelial layer. b Multicellular epidermal glands with prominent nuclei (arrowhead) filling the coelomic cavity of the opisthosoma. Median mesentery (arrow) provided with blood lacunae and
Fig. 14 Erythraeus regalis, larva. a in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 14 Erythraeus regalis, larva. a Gnathosoma and idiosoma, dorsal view. b Dorsal opisthosomal seta. c Gnathosoma and idiosoma, ventral view
Fig. 11 Erythraeus cinereus, larva. a Leg I. b Leg II. c Leg III. d Tarsus I. e Tarsus II in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 11 Erythraeus cinereus, larva. a Leg I. b Leg II. c Leg III. d Tarsus I. e Tarsus II (d, e, only specialized setae shown)
Fig. 9 Erythraeus cinereus, larva. a Chelicera. b in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 9 Erythraeus cinereus, larva. a Chelicera. b Gnathosoma (and scutum), dorsal view. c Gnathosoma, ventral view. d Palp tibia. e Palp tarsus
Fig. 8 Erythraeus cinereus, adult. a Palp, medial view. b Crista metopica and eyes. c Dorsal opisthosomal setae. d in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 8 Erythraeus cinereus, adult. a Palp, medial view. b Crista metopica and eyes. c Dorsal opisthosomal setae. d Serratala on genu I. e Serratala on genu IV. f Diversity of serratalae and setae of non-serratalae type on telofemora, genua, and tibiae of legs I–IV
Fig. 6 Erythraeus phalangoides, larva. a in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 6 Erythraeus phalangoides, larva. a Gnathosoma and idiosoma, dorsal view. b Dorsal opisthosomal setae. c Gnathosoma and idiosoma, ventral view. d Seta ps
Fig. 10 Erythraeus cinereus, larva. a in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 10 Erythraeus cinereus, larva. a Gnathosoma and idiosoma, dorsal view. b Dorsal opisthosomal setae. c Gnathosoma and idiosoma, ventral view. d Seta ps
Fig. 12 Erythraeus regalis, adult. a Palp, medial view. b Crista metopica and eyes. c Dorsal opisthosomal setae. d in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 12 Erythraeus regalis, adult. a Palp, medial view. b Crista metopica and eyes. c Dorsal opisthosomal setae. d Serratala on genu I. e Serratala on genu IV. f Diversity of serratalae and setae of non-serratalae type on telofemora, genua, and tibiae of legs I–IV
Fig. 16 Erythraeus regalis, larva. a Leg I. b Leg II. c Leg III. d Genu-tarsus I. e Genu-tarsus II in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 16 Erythraeus regalis, larva. a Leg I. b Leg II. c Leg III. d Genu-tarsus I. e Genu-tarsus II. Tibia-tarsus III (d–f, only specialized setae shown)
Fig. 7 Erythraeus phalangoides, larva. a Leg I. b Leg II. c Leg III. d Tarsus I. e Tarsus II. f in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 7 Erythraeus phalangoides, larva. a Leg I. b Leg II. c Leg III. d Tarsus I. e Tarsus II. f Tarsus III (d–f, only specialized setae shown)
Fig. 2 in Morphology, microanatomy and sequence data of Sclerolinum contortum (Siboglindae, Annelida) of the Gulf of Mexico
Fig. 2 Tubes of Sclerolinum contortum GoM with characteristic anterior curled and posterior straight part
Fig. 4 in Morphology, microanatomy and sequence data of Sclerolinum contortum (Siboglindae, Annelida) of the Gulf of Mexico
Fig. 4 Semithin section series of tentacles and forepart. a Left tentacle at distal position with vascularized epidermis overlaying a singlelayered myoepithelium (arrowhead) surrounding a central coelomic cavity. Right tentacle at proximal position with mesenchyme filling the coelomic cavity. Each tentacle with two blood vessels (asterisk). b Base of cephalic lobe and of tentacles and beginning of the dorsal furrow; cephalic lobe with the brain consisting of central neuropil and peripheral somata; tentacles with mesodermal strands. c Forepart anterior to the frenulum with densely packed pyriform glands, single
Fig. 5 Erythraeus phalangoides, larva. a in Towards resolving the double classification in Erythraeus (Actinotrichida: Erythraeidae): matching larvae with adults using 28S sequence data and experimental rearing
Fig. 5 Erythraeus phalangoides, larva. a Gnathosoma (and scutum), dorsal view. b Odontus. c Gnathosoma, ventral view. d Palp tarsus
Fig. 1 in Morphology, microanatomy and sequence data of Sclerolinum contortum (Siboglindae, Annelida) of the Gulf of Mexico
Fig. 1 Phylogenetic tree of the Siboglinidae, including species of vestimentiferans, Sclerolinum, Osedax, and frenulates. Myriochele sp. (Polychaeta; Oweniidae) was used as an outgroup. The tree was built by neighbor-joining on a Kimura-2-Parameter distance calculated on a
Figure 4. (a) Therapy player software screen, where a) is the stimuli time, b) is the total therapy time, c) is the file path, d) displays the numeric values of each sequence of the therapy, e) shows the current value, and f) shows the current lag angle for zenith and azimuth values; (b) USB mechanism for conversion, where a) USB-UART converter, and b) USB-Zigbee converter.-Design of a Novel Servo-motorized Laser Device for Visual Pathways Diseases Therapy
<p>Where tt time expended by the servomotors to point the laser to a given position and execute<br> a laser beam sequence; tspin is the time that a servomotor needs to spin one degree; ttol is a given the<br> tolerance time; θservo is the addition of degrees that both servos in a laser driver need to spin point<br> the laser in a given position; tstimuli is the time expended in execute a laser beam, between 250 and<br> 605 ms (Weiskrantz et al., 1991); T is the total time of all repetitions in a therapy, suggested<br> between 20 and 60 minutes and N is the number of repetitions in a therapy.</p>
Figure 3. (Top): Illustration of the therapy selection main menu. This enables the user to select one of three options for the therapy. Stimuli sequence selectors; (Bottom): (a) Short distance – complete visual field; (b) Short distance – macular; (c) Middle-long distance.-Design of a Novel Servo-motorized Laser Device for Visual Pathways Diseases Therapy
<p>distance therapies for the prescribed time suggested by the ophthalmologist.<br> Note that the complete visual field therapy stimulates different parts in the entire visual field<br> whereas macular therapy stimulate only a small part of the visual field, only the first 10° of vision<br> range. In contrast, middle-long distance therapies are not developed inside the device; instead the<br> patient must sit watching a wall, where the stimuli will be presented. Figure 3 (Bottom) shows the<br> sequence selectors for the three different cases. The therapist will choose a desired number of<br> sequences according to the results of the examination to each patient; hence it is completely patient<br> dependent.<br> Once the therapist finishes the particular design of the stimuli sequence, the software<br> automatically displays a window where he can save the customized patient-specific details for future<br> use as a text file.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.