Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
241
datasets available to search
ShareScore release 0.9.0
Dataset results
241 results for “glycine”
Genomic relationships of Glycine remota, a recently discovered perennial relative of soybean, within the legume genus Glycine
<p><span>The legume genus, <em>Glycine</em>, which includes the Asian annual cultivated soybean, also includes a group of Australian perennial species comprising the subgenus <em>Glycine</em>. Because the subgenus <em>Glycine</em> represents the tertiary gene pool for one of the world's most important crops, the group has been the target of collection and study for decades, resulting in a steady growth in the number of formally recognized species, from six in the 1970s to over 20 at present, as well as a number of additional informal taxa. These studies have also produced a system of nuclear diploid "genome groups" corresponding to clades in molecular phylogenies. The aptly named <em>G</em>. <em>remota</em> is known only from a single isolated population in the Kimberley region of northwestern Australia and was named only in 2015. The species is unique within <em>Glycine</em> in having unifoliolate leaves; its discoverers hypothesized that <em>G</em>. <em>remota</em>, if diploid, is related to species of the I-genome that are also native to the Kimberley region. We produced low-coverage short-read genome sequencing data from an herbarium specimen of <em>G</em>. <em>remota</em>. Genome size estimates from the sequencing data suggest that <em>G</em>. <em>remota</em> is a diploid, while ploidy estimation is inconclusive likely due to the history of whole genome duplication in <em>Glycine</em>. Phylogenomic analyses of genome-wide SNPs, as well as phylogenetic analyses of the low copy nuclear gene (histone H3D), the entire ribosomal RNA cistron, and the internal transcribed spacer all placed the species unequivocally in the diploid I-genome clade. A complete plastome sequence was also generated and its placement with a plastome phylogeny is also consistent with membership in the I-genome.</span></p>
Effect of Glycine in Cystic Fibrosis
ClinicalTrials.gov study NCT01417481. IPD Sharing: Not stated. Countries: 1. Publications: 5.
Antidepressant Effects of the Glycine Receptor Antagonist AV-101 (4-chlorokynurenine) in Major Depressive Disorder
ClinicalTrials.gov study NCT02484456. IPD Sharing: Not stated. Countries: 1. Publications: 2.
Acute Glycine Pharmacodynamic Study
ClinicalTrials.gov study NCT01610011. IPD Sharing: Not stated. Countries: 1. Publications: 7.
Glycine and Oral D-Cycloserine in Alcoholic Patients and Healthy Subjects
ClinicalTrials.gov study NCT00635102. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Neurobiology of a Mutation in Glycine Metabolism in Psychotic Disorders
ClinicalTrials.gov study NCT01720316. IPD Sharing: NO. Countries: 1. Publications: 34.
Glycine Supplement for Severe COVID-19
ClinicalTrials.gov study NCT04443673. IPD Sharing: YES. Countries: 1. Publications: 29.
Glycine vs Placebo for the Schizophrenia Prodrome
ClinicalTrials.gov study NCT00291226. IPD Sharing: NO. Countries: 1. Publications: 1.
Genomic relationships of Glycine remota, a recently discovered perennial relative of soybean, within the legume genus Glycine
Open the record for dataset details and reuse information.
Stress amelioration response of glycine betaine and Arbuscular mycorrhizal fungi in sorghum under Cr toxicity
Open the record for dataset details and reuse information.
Stress driver analysis of annual wild soybean (Glycine soja) population decline and implications for the protection of wild soybean populations in China
Open the record for dataset details and reuse information.
Kellogg Biological Station site, station Treatment 1, standard levels of chemical inputs, conventional chisel plowed tillage, study of aboveground net primary productivity of Glycine max in units of gramsPerMeterSquaredPerYear on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Kellogg Biological Station (KBS) contains aboveground net primary productivity of Glycine max measurements in gramsPerMeterSquaredPerYear units and were aggregated to a yearly timescale.
Kellogg Biological Station site, station Treatment 2, standard levels of chemical inputs, no tillage, study of aboveground net primary productivity of Glycine max in units of gramsPerMeterSquaredPerYear on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Kellogg Biological Station (KBS) contains aboveground net primary productivity of Glycine max measurements in gramsPerMeterSquaredPerYear units and were aggregated to a yearly timescale.
Kellogg Biological Station site, station Treatment 4, certified oganic, no chemical inputs, annual tillage, rotary-hoed to control weeds, study of aboveground net primary productivity of Glycine max in units of gramsPerMeterSquaredPerYear on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Kellogg Biological Station (KBS) contains aboveground net primary productivity of Glycine max measurements in gramsPerMeterSquaredPerYear units and were aggregated to a yearly timescale.
Kellogg Biological Station site, station Kellogg Biological Station, study of aboveground net primary productivity of Glycine max in units of gramsPerMeterSquaredPerYear on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Kellogg Biological Station (KBS) contains aboveground net primary productivity of Glycine max measurements in gramsPerMeterSquaredPerYear units and were aggregated to a yearly timescale.
Data from: The role of glycine betaine in range expansions; protecting mangroves against extreme freeze events
1. Due to a warming climate, mangrove populations within the Gulf of Mexico and along the Florida Atlantic coastline are expanding their range poleward. As mangroves expand their range limit, leading edge individuals are more likely to experience an increased incidence of freeze events. However, we still lack a clear understanding of the mechanisms used by mangroves to survive freezing conditions. 2. Here, we conducted common garden experiments at different locations experiencing variable winter freeze conditions to show glycine betaine, an organic osmolyte, increases significantly with freeze exposure, playing an important role in the freeze tolerance of Avicennia germinans, a widespread Neotropical mangrove. 3. We found glycine betaine accumulation was similar across all source populations and freeze exposure locations, suggesting glycine betaine is not a range limit adaptation and is instead used for freeze tolerance by A. germinans irrespective of source population. Plants sourced from populations that experience freezing conditions exhibited greater rates of survival, indicating range edge populations of A. germinans have other heritable adaptations in addition to glycine betaine for freeze tolerance. 4. Synthesis. Continued mangrove expansion poleward will result in a greater incidence of freeze events for individuals at the leading edge. Our findings suggest freeze tolerance in this species may be genetically based and that leading edge A. germinans have the potential to survive extreme freeze events and recover post-freeze, allowing for their continued expansion poleward. This process of selective survival may act to promote adaptation of freeze tolerance in range edge populations.
Data from: Implementing an evolutionary framework for understanding genetic relationships of phenotypically defined insect biotypes in the invasive soybean aphid (Aphis glycines)
Adaptive evolution of pest insects in response to the introduction of resistant cultivars is well documented and commonly results in virulent (i.e. capable of feeding upon resistant cultivars) insect populations being labeled as distinct biotypes. Phenotypically defined, biotypes frequently remain evolutionarily indistinct, resulting in ineffective application of virulence control measures and shorter durability of resistant cultivars. Here we utilize an evolutionary framework to discern the genetic relationship between biotypes of the soybean aphid (Aphis glycines, Matsumura). The soybean aphid is invasive in North America, and is among the most destructive pests of commercial soybean on the continent. Attempts to breed host-plant resistant soybean have been hampered by the emergence of virulent aphid biotypes that are unaffected by the plant's resistance mechanism(s). Comparative population genetic analysis of virulent and avirulent (i.e. unable to feed on resistant cultivars) biotypes found populations to be genetically indistinguishable across biotype and geographic distance, with high rates of inter-population immigration and admixture. The lack of genetic distinction between biotypes coupled with elevated genotypic diversity within all populations suggested virulence has a non-genetic based or includes a gene complex that is widely distributed throughout soybean aphid populations, which undergo regular dispersal and unimpeded sexual recombination.
Fig. 4 in Increase in isoflavonoid content in Glycine max cells transformed by the constitutively active Ca independent form of the AtCPK1 gene
Fig. 4. Expression of the G. max genes (a) - of the upstream enzymes - 4- coumarate:CoA ligase (4CL), (b) – of the downstream enzymes - isoflavones synthase (IFS) and the final step of daidzein and genistein biosynthesis - 2- hydroxyisoflavanone dehydratase (HID) and (c) - enzymes involve in prenilation of daidzein and coumestrol - isoflavone dimethylallyltransferase (IDT1) and coumestrol 4-dimethylallyltransferase (C4DT) in the control callus culture (Gm) and callus line transformed with the constitutively active AtCPK1 (GmCa1 and GmCa2). Data (mean ± standard error) represent measurements of three independent replicates from two different RNA isolations and are presented as relative expression levels normalized to the expression of the G. max housekeeping genes. Different letters above the bars indicate statistically significant differences of means (P <0.05), Fisher's LSD.
Fig. 2. A in Increase in isoflavonoid content in Glycine max cells transformed by the constitutively active Ca independent form of the AtCPK1 gene
Fig. 2. A representative HPLC-UV profile of the AtCPK1-transformed callus culture of G. max – GmCa2 (A) and the control callus culture Gm (B). The callus tissue extracts recorded at 254 nm. Peak numbers correspond to each of the identified components and are listed in Table 3.
Fig. 3 in Increase in isoflavonoid content in Glycine max cells transformed by the constitutively active Ca independent form of the AtCPK1 gene
Fig. 3. Content (mg/g DW) of isoflavones-aglycones (a) and their glucosides and malonyl-glucosides derivatives (b–d) and prenylated isoflavones (e) in the control calli (Gm) and the AtCPK-transformed callus cultures - GmCa1 and GmCa2. Data are presented as the mean ± SE from four subcultures (biological replicates) with two technical replicates for each experiment. Different letters above the bars indicate statistically significant differences of means (P <0.05), Fisher's LSD.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.