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Fig. 2 in Les diffÉrentes formes de Criorhina ranunculi (Panzer, 1804) dans le canton de GenÈve (Diptera: Syrphidae) avec une clÉ pour sÉparer les formes de cette espÈce
Fig. 2. Criorhina, tête des mâles, vue dorsale; a) C. pachymera; b) C. pachymera, zoom sur la partie centrale; c) C. ranunculi forme C, zoom sur la partie centrale; la flÈche bleue dèsigne le front. (Photos Martin C. D. Speight)
Fig. 1 in Les diffÉrentes formes de Criorhina ranunculi (Panzer, 1804) dans le canton de GenÈve (Diptera: Syrphidae) avec une clÉ pour sÉparer les formes de cette espÈce
Fig. 1. Criorhina pachymera et les formes de Criorhina ranunculi (longueur du corps 14–18 mm). a) Criorhina ranunculi forme A, mâle; b) C. ranunculi forme B, mâle; c) C. ranunculi forme C, mâle; d) C. pachymera, mâle (repris de Pètremand et al. 2020). (Photos Martin C. D. Speight)
Data platform (genotyping data set) related to ERDF postdoctoral project No. 1.1.1.2/VIAA/4/20/718 "The role of vitamin D gene polymorphisms and its receptors in the modulation of intestinal inflammation in patients with relapsing and progressive forms of multiple sclerosis".
<p><strong>Data platform </strong><strong>(genotyping dataset)</strong> <strong>related to the ERDF postdoctoral project No. </strong><strong>1.1.1.2/VIAA/4/20/718</strong><strong> “</strong><strong>The role of vitamin D and its receptor gene polymorphisms in the modulation of intestinal inflammation in patients with relapsing and progressive forms of multiple sclerosis</strong><strong>”.</strong></p> <p><strong>About the project and gathered data:</strong></p> <p>The dataset contains genotyping data on 289 sex-balanced samples (approximately 60% women / 40% men)) were created at the the multiple sclerosis (MS) Clinic of the Latvian Maritime Medical Center (LMMC) in 2011 (disease duration of 1-51 years); the collection was updated within the framework of the ERDF MS project (2017-2020) and replenished during the ERDF postdoctoral project No. 1.1.1.2/VIAA/4/20/718 “The role of vitamin D and its receptor gene polymorphisms in the modulation of intestinal inflammation in patients with relapsing and progressive forms of multiple sclerosis” (2021-2023).</p> <p>For the <strong>Genotyping dataset </strong>relevant information for each patient from the MS disease cohort, referring to proteasomal gene genetic variations (microsatellites and SNPs): (HSMS006 <em>(PSMA6),</em> HSMS602 <em>(FAM177A1),</em> HSMS701 <em>(KIAA0391)</em>, HSMS702 <em>(KIAA0391)</em> HSMS801 <em>(KIAA0391)</em>, rs11543947<em>(PSMB5), </em>rs2277460 (mi110), rs1048990 (mi8)<em> (PSMA6),</em> rs1048990 (mi8)<em> (PSMA6),</em> rs2295826/rs2295827<em>(PSMC6),</em> rs2348071 <em>(PSMA3),</em> rs2071543, rs9357155 <em>(PSMB8),</em> rs17587<em>(PSMB9),</em> rs74421874 <em>(PSMD9); </em>rs9275596 from HLA region; vitamin D-related genes (VDR and GC) polymorphisms: rs2228570, rs1544410, rs7975232, rs731236 (<em>VDR</em>) and rs7041, rs4588 <em>(GC).</em></p>
Analytic results on the massive three-loop form factors: quarkonic contributions
<p>This repository contains the ancillary files to the publication</p> <p>"Analytic results on the massive three-loop form factors: quarkonic contributions"</p> <p>J. Blümlein , A. De Freitas, P. Marquard , N. Rana, and C. Schneider</p>
Fig. 8 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex
Fig. 8. Overview of phylogenetic relationships and molecular and morphological differentiation of C. ama sp. nov. and C. aravera sp. nov. and its parallel species pair (C. ypo Casciotta, Almirón, Piálek, Gómez & Říčan, 2010 and C. yjhui Piálek, Casciotta, Almirón & Říčan, 2019). A. Summary of phylogenetic relationships within the C. mandelburgeri species complex with a nDNA ddRAD SVDQ species tree analysis as main topology focusing on the parallel species pairs in the Piray Guazú (the two new species) and Urugua-í River basins. Species tree is based on 60% SNP-representation matrix using fixed (= homozygotic sites). Red and blue basal branches and nodes in the species tree topology show biogeography (Red: Iguazú, Blue: Middle Paraná). Numbers in parentheses are total numbers of analyzed individuals (in nDNA/ in mtDNA). Numbers at nodes show bootstrap support values. Species colours as in Fig. 5. Blue arrows show nDNA introgression from C. mandelburgeri into C. aravera and C. yjhui. Modified from Říčan et al. (2021b). B. Alternative topology to the right of the tree represents mtDNA relationships of species in the two focal species pairs. Only C. ypo does not have a mitonuclear phylogenetic conflict. Modified from Říčan et al. (2021b). C. Inference of population structure based on the Admixture analysis for the two focal species pairs. Note majority assignment of C. yjhui and C. aravera with C. ypo and C. ama and partial assignment to C. mandelburgeri sensu lato at K10 to K13, and complete separation of all species at K14. Modified from Říčan et al. (2021b). D. Morphometric variation and discrimination of the two species pairs of sympatric species from the Piray Guazú (C. ama, C. aravera) and Urugua-í (C. ypo, C. yjhui) River basins analyzed by PCA based on holotype and paratype specimens ≥ 70 mm SL. Morphological measurements followed Kullander's (1986) methodology for Crenicichla Heckel, 1840 and were used as proportional values in % of SL. Note complete separation of species between ecomorphs (sympatric) and partial separation within ecomorphs (allopatric). Modified from Říčan et al. (2021b).
Fig. 7 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex
Fig. 7. Paratype locality of C. ama sp. nov., tributary to upper arroyo Piray Guazú on RP16 23 km from San Pedro (26°35′45.90″ S, 54°16′59.96″ W), 26 November 2016. Crenicichla aravera sp. nov. is absent at this locality.
Fig. 4 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex
Fig. 4. Lower pharyngeal tooth plate in occlusal view. A. Crenicichla ama sp. nov., paratype (MLP 11182, 94.5 mm). B. Crenicichla aravera sp. nov., paratype (MLP 11452, 93.7 mm). Scale bars = 1 mm.
Fig. 6 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex
Fig. 6. Type locality of C. ama sp. nov. and C. aravera sp. nov., upper arroyo Piray Guazú on RP20 (26°26′34.1″ S, 54°08′29.4″ W), 18 February 2012.
Fig. 5. A in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex
Fig. 5. A.Topographic map of the Middle Paraná Basin. B. Satellite map of the Piray Guazú Basin showing distribution of the sympatric C. ama sp. nov. (dark green) and C. aravera sp. nov. (light green), and also of other species in the Iguazú (red) and the Middle Paraná (C. ypo Casciotta, Almirón, Piálek, Gómez & Říčan, 2010: dark orange; C. yjhui: orange; C. hu: yellow; C. mandelburgeri sensu lato: blue, C. gillmorlisi: grey; C. taikyra: pink). Large and small dots in the Piray Guazú Basin show localities where the species is common or rare, respectively. Dark blue and light blue dots show the northern and southern mtDNA clades of C. mandelburgeri, respectively. White bars show location of significant waterfalls. White dot (marked with X in B) shows an upstream locality in the Piray Guazú where both C. ama and C. aravera are absent. Locality 1 (in B, marked with a star) is the type locality of both new species. Localities 2 and 3 (in B) are paratype localities of the two new species. Inset in A shows the parallel species pairs in the Piray Guazú and Urugua-í basins.
Fig. 2 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex
Fig. 2. Crenicichla ama sp. nov., live specimens. A–B. Male paratypes. C–E. Female paratypes. A. MLP 11448, tributary to upper arroyo Piray Guazú on RP16 23 km from San Pedro, 26°35′45.90″ S, 54°16′59.96″ W, November 26 2016. B. MLP 11182, 94.5 mm. C–D. MLP 11180. E. MLP 11448, tributary to upper arroyo Piray Guazú on RP16 23 km from San Pedro, 26°35′45.90″ S, 54°16′59.96″ W, November 26 2016).
Fig. 3 in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex
Fig. 3. Crenicichla aravera sp. nov., live specimens. A. Holotype, ♂ (MLP 11450). B. Paratype, ♂ subadult (MLP 11451, 81.2 mm). C–D. Female paratypes (MLP 11451, 83.3 mm; MLP 11452, 93.7 mm), upper arroyo Piray Guazú on RP20, February 18 2012.
Fig. 1. A in Description of two new species forming a sympatric species pair of Crenicichla (Teleostei: Cichlidae) endemic to the Piray Guazú River in the Paraná River Basin, Misiones, Argentina and belonging to the C. mandelburgeri species complex
Fig. 1. A. Crenicichla ama sp. nov., holotype, ♂ (MLP 11446, 105.8 mm). B. Crenicichla aravera sp. nov., holotype, ♂ (MLP 11450, 102.5 mm).
Fig. 5 in How many species of whipworms do we share? Whipworms from man and other primates form two phylogenetic lineages
Fig. 5. Neighbor joining tree (by AsaturA, which is designed to deal with amino acid saturation) as inferred from cox1 amino acid sequences using an extended data set. Numbers above branches indicate NJ bootstrap support (1000 replicates)/ML bootstrap support (1 000 replicates)/MP bootstrap support (1 000 replicates). Sequences newly reported in this study are bold typed. Tree is rooted to Anatrichosoma haycocki Spratt, 1982 (AJ288160).
Fig. 4. Unrooted maximum parsimony cox1 in How many species of whipworms do we share? Whipworms from man and other primates form two phylogenetic lineages
Fig. 4. Unrooted maximum parsimony cox1 tree of the genus Trichuris Roederer, 1761 as inferred from partial cox1 amino acid se- quences. Numbers above branches indicate MP bootstrap support (1 000 replicates)/ML bootstrap support (1 000 replicates)/NJ bootstrap support (1 000 replicates). Sequences newly reported in this study are bold typed.
Data from: Leveraging a new branch-based taper curve and form factor from terrestrial laser scanning proxies
<p>Modeling branch taper curve and form factor contributes to increasing the efficiency of tree crown reconstruction: the branch taper, defined as the sequential measure of diameters along the course of the branch, is pivotal to accurately estimate key branch variables such as biomass and volume. Branch diameters or volumes have commonly been estimated from terrestrial laser scanning (TLS) based on automatized voxelization or cylinder-fitting approaches, given the whole branch length is sufficiently covered by laser reflections. The results are, however, often affected by ample variations in point cloud characteristics caused by varying point density, occlusions, and noise. As these characteristics of TLS have been difficult to be sufficiently controlled or eliminated in automatized-techniques, we proposed a new branch-based taper curve model and form factor (BFF), which can be employed directly from the laser reflections and under variable point cloud characteristics.</p> <p>In this paper, the approach is demonstrated on primary branches using a set of TLS-derived diameter datasets from a sample of 20 trees of 6 species. The result shows an improvement in the accuracy of the diameter estimates and, at best, enabled for predicting encompassing finer branch scales (<10 cm), with R2 of 0.86 and a mean relative absolute error of 1.03 cm (29%) when validated with field-measured diameters. This approach was also capable of retrieving branch diameters for a large percentage of explicitly identified primary branches (>85%) directly from the filtered points when validated with panoramic images acquired concurrently with laser scanning. Frequently used automatized crown reconstructions from the quantitative structural model (QSM), on the other hand, was largely obscured by discrepancies in the point clouds, with the crown-tops and finer branches being the most critical.</p> <p>Furthermore, our approach provides mean BFF of 0.35 and 0.49 with the diameters determined from 5% and 10% of the total branch length, respectively, which may have the potential to produce branch volume information with reasonable accuracy from only knowing the length and respective diameter.</p> <p>Although our model can be regarded as a first approximation to the taper curve and form factor for the primary branches on a relatively small set of samples, the approach can further our understanding of alternative ways to improve the accuracy of the assessment of branch diameter and volume. The approach may also be extended to other branch orders. This could expand the horizon for volumetric calculations and biomass estimates from non-destructive TLS proxies in tree crowns.</p>
Fig. 2 in How many species of whipworms do we share? Whipworms from man and other primates form two phylogenetic lineages
Fig. 2. Maximum likelihood phylogenetic tree as inferred from ITS2 sequences. The tree was computed using the GTR model with discrete gamma distribution in four categories. Numbers above branches indicate ML bootstrap support (1 000 replicates)/Bayesian posterior probabilities (PhyloBayes; see Methods for details)/MP bootstrap support (1 000 replicates). Sequences newly reported in this study are bold typed. The three basic clades of genus Trichuris are highlighted. Tree was rooted to Trichuris skrjabini Baskakov, 1924 (AJ489248).
Navigating the Complex Solid Form Landscape of the Quercetin Flavonoid Molecule
<p>Data related to the paper published in Crystal Growth & Design, with doi:https://doi.org/10.1021/acs.cgd.3c00584.</p> <p>Quercetin, a naturally occurring bioflavonoid substance widely used in the nutraceutical and food industries, exists in various solid forms that can have different physicochemical properties, thus impacting this compound’s performance in various applications. In this work, we will clarify the complex solid-form landscape of this molecule. Two elusive isostructural solvates of quercetin were obtained from ethanol and methanol. The obtained crystals were characterized experimentally, but the crystallographic structure could not be solved due to their high instability. Nevertheless, the desolvated structure resulting from a high-temperature treatment (or prolonged storage at ambient conditions) of both these two labile crystals was characterized and solved via powder X-ray diffraction and solid-state nuclear magnetic resonance (SSNMR). This anhydrous crystal structure was compared with another anhydrous quercetin form obtained in our previous work, indicating that, at least, two different anhydrous polymorphs of quercetin exist. Navigating the solid-form landscape of quercetin is essential to ensure accurate control of the functional properties of food, nutraceutical, or pharmaceutical products containing crystal forms of this substance.</p>
Рис. 2–4. Внешний виΑ Acrotylus longipes и кубышка. 2 – жеΛтокрыΛая форма; 3 – оранжевокрыΛая форма; 4 – кубышка. Figs 2–4. General view of Acrotylus longipes and еgg capsule. 2 – yellow-winged form; 3 – orange-winged form; 4 – еgg capsule. in Notes to the fauna and bionomics of grasshoppers (Orthoptera: Acridoidea) of the Taman Peninsula with record of a new species for the Caucasus
Рис. 2–4. Внешний виΑ Acrotylus longipes и кубышка. 2 – жеΛтокрыΛая форма; 3 – оранжевокрыΛая форма; 4 – кубышка. Figs 2–4. General view of Acrotylus longipes and еgg capsule. 2 – yellow-winged form; 3 – orange-winged form; 4 – еgg capsule.
Growth form and leaf habit drive contrasting effects of Arctic amplification in long-lived woody species
<p><strong>Raw_and_STD_Chronologies.txt</strong> contains the raw (suffix "_raw") and indexed (suffix "_std") ring-width chronology derived from seven species (<em>Juniperus communis</em> L., <em>Betula nana</em> L., <em>Salix lanata</em> L., <em>Picea abies</em> L., <em>Pinus contorta</em> Douglas, <em>Betula pubescens</em> Ehrh., and <em>Sorbus aucuparia</em> L.) collected from ten sites located across Iceland. In the file, each column addresses the chronology belonging to a precise site and species, coded following the one used in the International Tree-Ring Data Bank (ITRDB) as listed in Grissino_Mayer (1993). This data was used to model growth trends and to perform climate-growth associations over the 1967-2018 period.</p>
Different Forms of Plasticity Interact in Adult Humans
<p>The data files are all in csv format, organized in columns for each variable and rows for each instance.<br> The column names denote the variables, explained below.</p> <p>---BINOCULAR RIVALRY DATA--- </p> <p>The experiment consisted of reporting the perceived orientation of a Gabor patch. Participants observed two <br> different Gabor patches (counter-clockwise -45° or clockwise 45°) projected separately on their two eyes <br> through a mirror stereoscope. They reported the perceived orientation by pressing the left (counter-clockwise), right (clockwise), or down (mixed) arrow keys.</p> <p>-FILES-<br> data_BR : main experimental cohort<br> data_BR_vc : visual control condition<br> data_BR_wm : working memory control condition</p> <p>-COLUMN NAMES-<br> grating : perceived grating orientation (1 counter-clockwise 45°, 2 clockwise 45°, 3 mixed)<br> trial : trial number (2 total in a block)<br> subtrial : sub-trial number (4 total in a block)<br> position : position of the counter-clockwise grating (1 left, 2 right)<br> perceiving_eye : the eye that is dominating perception at that instance (1 left, 2 right)<br> phase_duration : phase duration in seconds of the perception instance <br> ID : participant ID<br> block : block number (8 total in a session)<br> deprived_eye : code for the deprived eye (1 left, 2 right)<br> logPhaseDur : log10 transformed phase duration<br> session : session code (1 simple, 0 combined, 2 control)</p> <p>---MOTOR SEQUENCE LEARNING DATA---</p> <p>The experiment consisted of tapping four fingers (middle finger excluded) on a response pad, following a <br> sequence displayed on the monitor. The numbers on the sequence correspond to fingers (1 thumb, 2 index, <br> 3 ring, 4 little). Participants practiced two of the sequences for 14 blocks (test sequences) and two <br> others for only 1 block (control sequences) in the initial training. Each hand was trained separately. A <br> retest of two blocks for each of the sequences was done 45 minutes after the initial training per hand.</p> <p>-FILES-<br> data_MSL : main experimental cohort</p> <p>-COLUMN NAMES-<br> part : part number (4 in total: 2 test, 2 control)<br> block : block number (up to 14 for test sequences)<br> trial : trial number (5 in each block)<br> repetition : repetition number (i.e. completion of the sequence, 3 in each trial) <br> RT : reaction time in seconds<br> accuracy : whether the sequence was correct (i.e. no finger tap error) (1 correct, 0 incorrect)<br> ID : participant ID<br> sequence_num : sequence number (1: control, 2 test)<br> used_hand : is this the dominant hand (1 yes, 0 no)<br> first_hand : which is the first-trained hand (1 dominant, 0 non-dominant)<br> hand : which hand is currently used (1 left 2 right)<br> run : run number (1 initial training, 2 retest after 45 minutes)<br> logRT : log10 transformed reaction time<br> session : session code (1 simple, 0 combined)</p> <p>---WORKING MEMORY DATA---</p> <p>The experiment consisted of reporting whether a probe letter belonged to a previously seen set. The set of letters (3, 5, or 7 elements) was flashed (? sec) one by one (ISI ?) and after a 3 second pause a probe was flashed. Participants indicated if the probe belonged to the set by pressing arrow keys (left arrow no, right arrow yes). They received auditory feedback on their accuracy.</p> <p>-FILES-<br> data_WM : working memory control condition</p> <p>-COLUMN NAMES-<br> response : participant's response (1 yes, 0 no)<br> accuracy : accuracy (1 correct, 0 incorrect)<br> block : block number (3 in each run)<br> trial : trial number (30 total in each block)<br> length : set length (3,5 or 7)<br> set : the set of letters shown<br> RT : reaction time in seconds<br> probe : probe letter<br> ID : participant ID<br> run : run number (1-4)<br> logRT : log10 transformed reaction time</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.