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13,587 results for “specification”
Anisotropic Gold Nanomaterial Synthesis Using Peptide Facet Specificity and Timed Intervention: Experiment and simulation data, figures, and notebooks for recreating figures
<p><strong>/Data</strong></p> <p>Contains all experimental and simulation data used to generate figures in the manuscript. Each folder is labelled with the relevant technique: atomic force microscopy (AFM), dynamic light scattering (DLS), molecular dynamics (MD), small-angle X-ray scattering (SAXS), scanning electron microscopy (SEM), transmission electron microscopy and selected area electron diffraction (TEM-SAED), and ultraviolet-visible light spectroscopy (UV-Vis). Folders may contain subfolders from different experiments and should be unchanged for the notebooks to point to the correct path when loading data. Any file which contains SI in the filename indicates sample information, which includes sample concentration, delay associated with creating the sample (Delay4 is the relevant column name), unique identification (UID), etc.</p> <p><strong>/Data/AFM</strong></p> <p>Each filename is labelled with the number of delay associated with the sample or No Z2 Control in the case of the control sample. Each sample contains 3 files, the raw AFM data, a processed image, and an excel file with line profile measurements.</p> <p><strong>/Data/DLS</strong></p> <p>Contains exported data from Malvern Nano ZS DLS instrument.</p> <p><strong>/Data/Images</strong></p> <p>Images from the colloidal stability experiment.</p> <p><strong>/Data/MD</strong></p> <p>Molecular dynamics data and some notebooks for processing peptide and facet combinations.</p> <p><strong>/Data/SAXS</strong></p> <p>Reduced SAXS data from time-resolved study of nanoplatelet growth.</p> <p><strong>/Data/SEM</strong></p> <p>SEM images of samples prepared with and without dynamic intervention (control).</p> <p><strong>/Data/TEM_SAED</strong></p> <p>TEM images of samples prepared with and without dynamic intervention (control), and SAED image of a nanoplatelet.</p> <p><strong>/Data/UV-Vis</strong></p> <p>Spectroscopy data from different Z2 variants, the microplate based stability assay, cuvette based stability assay, and the time resolved (kinetics) measurements of particle growth as a result of manual dynamic intervention.</p> <p><strong>/Notebooks</strong></p> <p>This folder contains all of the Jupyter notebooks used to plot data and fit SAXS scattering profiles.</p> <p>See <strong>/Notebooks/environment.yml</strong> for packages necessary to execute the notebooks here and in <strong>/Synthesis_Protocol</strong>. We recommend installing this environment by using:</p> <p> </p> <p>Refer to <a href="https://github.com/SasView/sasmodels">https://github.com/SasView/sasmodels</a> and the first cell of <strong>/Notebooks/SAXS_Fitting.ipynb</strong> for specific instructions on how to complete installation of the sasmodels module (sasmodels will be installed by Pip if you correctly use the shared environment.yml file).</p> <p><strong>/Figures</strong></p> <p>Figures presented in the publication</p>
High-temperature stress induces bacteria-specific adverse and reversible effects on Ulva (Chlorophyta) growth and its chemosphere in a reductionist model system
<p>This dataset contains raw files from a mass spectrometric analysis of the exo-metabolome of the green macroalga <em>Ulva mutabilis</em> (Chlorophyta).</p>
Data from: Species-specific ecological traits, phylogeny, and geography underpin vulnerability to population declines for North American birds
<p>Species declines and extinctions characterize the Anthropocene. Determining species vulnerability to decline, and where and how to mitigate threats, are paramount for effective conservation. We hypothesized that species with shared ecological traits also share threats, and therefore may experience similar population trends. Here, we used a Bayesian modeling framework to test whether phylogeny, geography, and 22 ecological traits predict regional population trends for 380 North American bird species. Groups like blackbirds, warblers, and shorebirds, as well as species occupying Bird Conservation Regions at more extreme latitudes in North America, exhibited negative population trends, while groups such as ducks, raptors, and waders, as well as species occupying more inland Bird Conservation Regions, exhibited positive trends. Specifically, we found that in addition to phylogeny and breeding geography, multiple ecological traits contributed to explaining variation in regional population trends for North American birds. Furthermore, we found that regional trends and the relative effects of migration distance, phylogeny, and geography differ between shorebirds, songbirds, and waterbirds. Our work provides evidence that multiple ecological traits correlate with North American bird population trends, but that the individual effects of these ecological traits in predicting population trends often vary between different groups of birds. Moreover, our results reinforce the notion that variation in avian population trends is controlled by more than phylogeny and geography, where closely-related species within one region can show unique population trends due to differences in their ecological traits. We recommend that regional conservation plans, i.e. one-size-fits-all plans, be implemented only for bird groups with population trends under strong phylogenetic or geographic controls. We underscore the need to develop species-specific research and management strategies for other groups, like songbirds, that exhibit high variation in their population trends and are influenced by multiple ecological traits.</p>
Tissue-specific Regulatory Network from Badr's work
<p>Mapping perturbed molecular circuits that underlie complex diseases remains a great challenge. We developed a comprehensive resource of 394 cell type- and tissue-specific gene regulatory networks for human, each specifying the genome-wide connectivity among transcription factors, enhancers, promoters and genes. Integration with 37 genome-wide association studies (GWASs) showed that disease-associated genetic variants--including variants that do not reach genome-wide significance--often perturb regulatory modules that are highly specific to disease-relevant cell types or tissues. Our resource opens the door to systematic analysis of regulatory programs across hundreds of human cell types and tissues (http://regulatorycircuits.org).</p> <p>hs_blood_network.rds : human blood related gene regulatory networks (R program data file)</p> <p>hs_pantissue_network.rds : human pan-tissue related gene regulatory networks (R program data file)</p> <p>mm_blood_network.rds : mouse blood related gene regulatory networks (R program data file)</p> <p>mm_pantissue_network.rds : mouse pan-tissue related gene regulatory networks (R program data file)</p> <ul> <li>PMID: <strong>26950747</strong></li> <li>PMCID: <a href="http://www.ncbi.nlm.nih.gov/pmc/articles/pmc4967716/">PMC4967716</a></li> <li>DOI: <a href="https://doi.org/10.1038/nmeth.3799">10.1038/nmeth.3799</a></li> </ul>
Targeted social immunity is associated with a pathogen-specific erosion of individual immune function in ants - dataset
<p>Complete dataset of quantitative data and R scripts used to generate the figures and statistics of the publication, sorted by figure panel number. Information about data structure are including in the scripts. </p>
Isotope mixing scenarios for: To what extent are the source mixing models accurate: evaluation of the model accuracy and guidelines for the site-specific model selection
<p><span>We selected 10 types of distinct isotope signatures that can be found in the samples of natural water. Every 3–10 types of hypothetical isotope signatures were conceptually grouped together. There would be 968 possible combinations based on combinatorics theory. However, we needed distinct mixing polygons to facilitate our determination of model capacity in dealing with uncertainties. Therefore, we </span><span>kept </span><span>only 240 such groups in </span><span>the </span><span>final</span><span> analysis</span><span>. Each group was designated with a </span><span>predefined</span><span> mixing ratio. After that, we ran all the examined models through these mixing scenarios to </span><span>obtain</span><span> the model estimation of the mixing ratios.</span></p>
Magnetic elastomers as specific soft actuators – predicting particular modes of deformation from selected configurations of magnetizable inclusions
<p>This dataset contains the underlying data and python programs to generate the plots in the manuscript</p> <p><em>L. Fischer and Andreas M. Menzel</em><br>Magnetic elastomers as specific soft actuators – predicting particular modes of deformation from selected configurations of magnetizable inclusions<br>J. Magn. Magn. Mater. <strong>591</strong>, 171695 (2024) (DOI: <a href="https://doi.org/10.1016/j.jmmm.2023.171695" target="_blank" rel="noopener">10.1016/j.jmmm.2023.171695</a>).<br>Part of the special issue "ICMF 2023".</p> <p>arXiv Version: <a href="https://arxiv.org/abs/2310.16833" target="_blank" rel="noopener">arXiv:2310.16833</a>.</p> <p>For more information, please see the included "Readme.txt" in the dataset "Zenodo.zip".</p>
Composite activity type and stride-specific energy expenditure estimation model for thigh-worn accelerometry
<p>This repository contains code and data for the research project 'Estimation of activity induced energy expenditure using thigh-worn accelerometry and machine learning approaches'.</p> <ul> <li>The <strong>code </strong>subfolder contains Jupyter Notebooks and a Python file with helper functions. Further, the models subfolder contains the trained models.</li> <li>The <strong>data </strong>subfolder contains the raw accelerometer files (AX) as well as the raw data from the indirect calorimetry (CPET). Further, different processing files can be found here. The file log_master.csv contains the sociodemographic and timestamp data.</li> <li>The <strong>figures</strong> subfolder contains all relevant figures, which are created as part of running the Jupyter Notebooks. These figures are also part of the research publication.</li> </ul>
ß-SPECIFIC 4 Patients: Study of Pediatric EffiCacy and Safety wIth FIrst-line Use of Canakinumab
ClinicalTrials.gov study NCT02296424. IPD Sharing: UNDECIDED. Countries: 16. Publications: 1.
Genetic-specific Effects of Fructose on Liver Lipogenesis
ClinicalTrials.gov study NCT03783195. IPD Sharing: YES. Countries: 1. Publications: 27.
A Study With [18F]MNI-1054 to Determine Lysine -Specific Demethylase 1A (LSD1) Brain Enzyme Occupancy of TAK-418 After Single-Dose Oral Administration in Healthy Participants
ClinicalTrials.gov study NCT04202497. IPD Sharing: YES. Countries: 1. Publications: 0.
Efficacy Regarding Renal Function of Everolimus in Combination With Specific Standard Immunosuppressive Regimen Lung Transplant Recipients
ClinicalTrials.gov study NCT01404325. IPD Sharing: UNDECIDED. Countries: 1. Publications: 2.
Sex-specific speed-accuracy tradeoffs shape neural processing of acoustic signals in a grasshopper
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The cacao gene atlas: A transcriptome developmental atlas reveals highly tissue-specific and dynamically-regulated gene networks in Theobroma cacao L
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Water depth influences survival and predator-specific patterns of nest loss in three secretive marsh bird species
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Age-specific effects of deletions: Implications for ageing theories
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Morphological and molecular evidence support elevating Erythroxylum macrophyllum var. savannarum (Erythroxylaceae) to specific status
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Data from: Sex-specific resource strategies mediate home range sizes of an endangered carnivore across multiple scales
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Pesticide exposure triggers sex-specific inter- and trans-generational effects conditioned by past sexual selection
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Intra-specific variation in metal tolerance modulate competition between two marine diatoms
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ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.