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821 results for “Molecular Systematics”
Figure 10 from: Jirapatrasilp P, Huang C-W, Sutcharit C, Lee C-T (2024) The arboreal snail genus Amphidromus Albers, 1850 (Eupulmonata, Camaenidae) of Southeast Asia: 1. Molecular systematics of some Vietnamese species and related species from Cambodia, Indonesia, and Laos. ZooKeys 1196: 15-78. https://doi.org/10.3897/zookeys.1196.112146
Figure 10 Mitochondrial COI haplotype minimum spanning networks of Amphidromus bozhii Wang, 2019. The size of each circle corresponds to the frequency of that haplotype, also shown as the number in that circle. The bars on the branches indicate the number of mutational steps between haplotypes. Specimen codes correspond to those in Table 1.
Figure 1 from: Jirapatrasilp P, Huang C-W, Sutcharit C, Lee C-T (2024) The arboreal snail genus Amphidromus Albers, 1850 (Eupulmonata, Camaenidae) of Southeast Asia: 1. Molecular systematics of some Vietnamese species and related species from Cambodia, Indonesia, and Laos. ZooKeys 1196: 15-78. https://doi.org/10.3897/zookeys.1196.112146
Figure 1 Distribution map of Amphidromus samples recognised in this study. 1. Amphidromus bozhii; 2. Amphidromus placostylus; 3. Amphidromus asperoides sp. nov.; 4. Amphidromus ingens; 5. Amphidromus ingensoides sp. nov.; 6. Amphidromus buelowi; 7. Amphidromus thachi; 8. Amphidromus metabletus; 9. Amphidromus haematostoma; 10. Amphidromus madelineae; 11. Amphidromus costifer; 12. Amphidromus pankowskianus; 13. Amphidromus roseolabiatus. Species numbers correspond to those in Fig. 2 and Tables 1, 2. The map was produced using QGIS (3.16.0) with SRTM Downloader plugin (https://github.com/hdus/SRTM-Downloader), retrieving SRTM data from NASA Earth Data server (https://urs.earthdata.nasa.gov/).
FIGURE 3 in A systematic assessment of Leporinus tigrinus (Characiformes: Anostomidae) using morphological and molecular data
FIGURE 3. Leporinus tigrinus, syntypes, MCZ 20446, 138.3–143.9 mm SL: "Goyaz", Brazil.
FIGURE 8 in A systematic assessment of Leporinus tigrinus (Characiformes: Anostomidae) using morphological and molecular data
FIGURE 8. (A) Dorsal fin and (B) anal fin of Leporinus tigrinus (MZUEL 20673, 112.0 mm SL)
FIGURE 1 in A systematic assessment of Leporinus tigrinus (Characiformes: Anostomidae) using morphological and molecular data
FIGURE 1. Scatter plot of sheared Principal Component Analysis (PCA) in Leporinus tigrinus.
Genetic dataset of Systematic Identification of Needlefish (Belonidae) Species using Molecular Genetic and Morphological Markers in the Mediterranean and Black Seas
<p>The sequences used in the study from NCBI and BOLD databases.</p>
Molecular systematics of the tribe Physarieae (Brassicaceae) based on the nuclear ITS, LUMINIDEPENDENS, and chloroplast ndhF: Sequence alignments, trees, and supplemental figures
<p>Physarieae is a small tribe of herbaceous annual and woody perennial mustards that are mostly endemic to North America, with its members including a large amount of variation in floral, fruit and chromosomal variation. Building on a previous study of Physarieae based on morphology and <i>ndhF</i> plastid DNA, we reconstructed the evolutionary history of the tribe using new sequence data from two nuclear markers, and compared the new topologies against previously published cpDNA-based phylogenetic hypotheses. The novel analyses included ca. 420 new sequences of ITS and <i>LUMINIDEPENDENS</i> (<i>LD</i>) markers for 39 and 47 species, respectively, with sampling accounting for all seven genera of Physarieae, including nomenclatural type species, and 11 outgroup taxa. Maximum parsimony, maximum likelihood, and Bayesian analyses showed that these additional markers were largely consistent with the previous <i>ndh</i>F data that supported the monophyly of Physarieae and resolved two major clades within the tribe, i.e. DDNLS (<i>Dithyrea</i>, <i>Dimorphocarpa</i>, <i>Nerisyrenia</i>, <i>Lyrocarpa</i>, and <i>Synthlipsis</i>) and PP (<i>Paysonia</i> and <i>Physaria</i>). New analyses also increased internal resolution for some closely related species and lineages within both clades. The monophyly<i> </i>of <i>Dithyrea</i> and the sister relationship of <i>Paysonia</i> to <i>Physaria</i> was consistent in all trees, with the sister relationship of <i>Nerisyrenia </i>to <i>Lyrocarpa </i>supported by <i>ndhF</i> and <i>ITS</i>, and the positions of <i>Dimorphocarpa</i> and <i>Synthlipsis</i> shifted within the DDNLS Clade depending on the employed data set. Finally, using the strong, new phylogenetic framework of combined cpDNA + nDNA data, we discussed standing hypotheses of trichome evolution in the tribe suggested by <i>ndhF</i>.</p>
Supplementary material 1 from: Mo W-h, Chen H-y, Pang H, Liu J-x (2021) DNA barcoding for molecular identification of the genus Oxyscelio (Hymenoptera, Scelionidae) from southern China, with descriptions of five new species. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 613-633. https://doi.org/10.3897/jhr.87.71912
Table S1. Genetic distances between COI sequences of Oxyscelio from southern China
Figure 5 from: Mo W-h, Chen H-y, Pang H, Liu J-x (2021) DNA barcoding for molecular identification of the genus Oxyscelio (Hymenoptera, Scelionidae) from southern China, with descriptions of five new species. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 613-633. https://doi.org/10.3897/jhr.87.71912
Figure 5 Oxyscelio stenos Mo & Chen, sp. nov., holotype, female (SCAU 3049080) A dorsal habitus B lateral habitus C head and mesosoma, dorsal view D head and mesosoma, lateral view E head, anterior view F antenna G metasoma, dorsal view H metasoma, ventral view.
Figure 4 from: Mo W-h, Chen H-y, Pang H, Liu J-x (2021) DNA barcoding for molecular identification of the genus Oxyscelio (Hymenoptera, Scelionidae) from southern China, with descriptions of five new species. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 613-633. https://doi.org/10.3897/jhr.87.71912
Figure 4 Oxyscelio latheticus Mo & Chen, sp. nov., holotype, female (SCAU 3049073) A dorsal habitus B lateral habitus C head and mesosoma, dorsal view D head and mesosoma, lateral view E head, anterior view F antenna G metasoma, dorsal view H metasoma, ventral view.
Figure 1 from: Mo W-h, Chen H-y, Pang H, Liu J-x (2021) DNA barcoding for molecular identification of the genus Oxyscelio (Hymenoptera, Scelionidae) from southern China, with descriptions of five new species. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 613-633. https://doi.org/10.3897/jhr.87.71912
Figure 1 Maximum likelihood tree demonstrating the clustering of OxyscelioCOI barcodes. Bootstraps values of 50 and above are indicated.
Figure 3 from: Mo W-h, Chen H-y, Pang H, Liu J-x (2021) DNA barcoding for molecular identification of the genus Oxyscelio (Hymenoptera, Scelionidae) from southern China, with descriptions of five new species. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 613-633. https://doi.org/10.3897/jhr.87.71912
Figure 3 Oxyscelio apheles Mo & Chen, sp. nov., holotype, female (SCAU 3049046) A dorsal habitus B lateral habitus C head and mesosoma, dorsal view D head and mesosoma, lateral view E head, anterior view F Antenna G metasoma, dorsal view H metasoma, ventral view.
Figure 6 from: Mo W-h, Chen H-y, Pang H, Liu J-x (2021) DNA barcoding for molecular identification of the genus Oxyscelio (Hymenoptera, Scelionidae) from southern China, with descriptions of five new species. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 613-633. https://doi.org/10.3897/jhr.87.71912
Figure 6 Oxyscelio striae Mo & Chen, sp. nov., holotype, female (SCAU 3048667) A dorsal habitus B lateral habitus C head and mesosoma, dorsal view D head and mesosoma, lateral view E head, anterior view F antenna G metasoma, dorsal view H metasoma, ventral view.
Figure 2 from: Mo W-h, Chen H-y, Pang H, Liu J-x (2021) DNA barcoding for molecular identification of the genus Oxyscelio (Hymenoptera, Scelionidae) from southern China, with descriptions of five new species. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 613-633. https://doi.org/10.3897/jhr.87.71912
Figure 2 Oxyscelio amalocarina Mo & Chen, sp. nov., holotype, female (SCAU 3049046) A dorsal habitus B lateral habitus C head and mesosoma, dorsal view D head and mesosoma, lateral view E head, anterior view F antenna G metasoma, dorsal view H metasoma, ventral view.
Figures 3-9 from: Vasiliţa C, Popovici OA, Talamas E, Johnson N, Masner L, Tortorici F, Fusu L (2021) Molecular analysis reveals Latonius planus Kononova to be a derived species of Trissolcus Ashmead. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 267-289. https://doi.org/10.3897/jhr.87.63533
Figures 3-9 Trissolcus planus (female) 3 habitus, dorsal view (SEM) 4 habitus, lateral view (SEM) 5 female antenna 6 maxillolabial complex (composite drawing) 7 head, frontal view (SEM) 8 head, lateral view (SEM) 9 mesosoma, lateral view (SEM).
Supplementary material 6 from: Vasiliţa C, Popovici OA, Talamas E, Johnson N, Masner L, Tortorici F, Fusu L (2021) Molecular analysis reveals Latonius planus Kononova to be a derived species of Trissolcus Ashmead. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 267-289. https://doi.org/10.3897/jhr.87.63533
Nexus alignment of the dataset from Talamas et al. (2019) including Trissolcus planus
Supplementary material 5 from: Vasiliţa C, Popovici OA, Talamas E, Johnson N, Masner L, Tortorici F, Fusu L (2021) Molecular analysis reveals Latonius planus Kononova to be a derived species of Trissolcus Ashmead. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 267-289. https://doi.org/10.3897/jhr.87.63533
Nexus alignment of the dataset from Taekul et al. (2014) including Trissolcus planus
Supplementary material 4 from: Vasiliţa C, Popovici OA, Talamas E, Johnson N, Masner L, Tortorici F, Fusu L (2021) Molecular analysis reveals Latonius planus Kononova to be a derived species of Trissolcus Ashmead. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 267-289. https://doi.org/10.3897/jhr.87.63533
Phylogenetic reconstruction on the molecular data set of Talamas et al. (2019), Bayesian analysis
Supplementary material 2 from: Vasiliţa C, Popovici OA, Talamas E, Johnson N, Masner L, Tortorici F, Fusu L (2021) Molecular analysis reveals Latonius planus Kononova to be a derived species of Trissolcus Ashmead. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 267-289. https://doi.org/10.3897/jhr.87.63533
Phylogenetic reconstruction on the partitioned data set of Taekul et al. (2014), ML analysis
Figure 2 from: Vasiliţa C, Popovici OA, Talamas E, Johnson N, Masner L, Tortorici F, Fusu L (2021) Molecular analysis reveals Latonius planus Kononova to be a derived species of Trissolcus Ashmead. In: Lahey Z, Talamas E (Eds) Advances in the Systematics of Platygastroidea III. Journal of Hymenoptera Research 87: 267-289. https://doi.org/10.3897/jhr.87.63533
Figure 2 Phylogenetic reconstruction of the molecular data set of Talamas et al. (2019), ML analysis. Posterior probabilities from the BI analysis were plotted besides Felsenstein's bootstrap support and transfer bootstrap expectation.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.