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Fig. 5 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 5. Decision tree used for specimens euthanized to obtain tissue. Blue indicates steps in the decision tree. Green indicates procedures that will lead to preservation of tissues for genetic study. Purple indicates procedures that lead to achieving multiple goals, including cell culture and obtaining gametes for current or future ARTs. NOTE: Breeding and IVF can result in offspring that can be used for genetic purposes, thereby achieving multiple goals.
Fig. 6 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 6. Decision tree used to obtain tissue from live animals. Blue indicates steps in the decision tree. Green indicates procedures that will lead to preservation of tissues for genetic study. Purple indicates procedures that lead to achieving multiple goals, including obtaining gametes for current or future ARTs. NOTE: Breeding and IVF can result in offspring that can be used for genetic purposes, thereby achieving multiple goals.
Fig. 4 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 4. Length of time from cell culture initiation to freezing for amphibian cell lines in San Diego Zoo's Frozen Zoo®. Low = 19 days; high = 596 days; average = 154 days.
Fig. 3 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 3. The "tissue piecing" protocol used to preserve viable cells for establishment of cell lines in the future. A) Tissue is cut into long, thin strips. B) Tissue is diced into 1 mm3 fragments before adding medium containing 10% DMSO as a cryoprotectant. C) Prepared tissue is stored in LN2 until future cell culture is possible; those without cell culture capability can transport samples using a dry shipper to maintain cold-chain.
Fig. 2 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 2. Procedures used to obtain amphibian eggs or sperm for use in ARTs. A) Gravid female Leopard Frog (Lithobates sp.) after gonadotropic hormone injection. B) Expressing eggs into container by pressing on abdomen and pushing thumb toward cloaca; eggs can be fertilized (i.e., IVF) by fresh or cryopreserved sperm. Sperm can similarly be released from males by pushing towards the cloaca and releasing sperm naturally (in season) or after injection of gonadotropic hormones (e.g., HIS).
Fig. 1 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 1. Role of genetic resource collections in the research and conservation of amphibians. Green indicates the storage of tissues in biobanks. Purple indicates procedures associated with ARTs that lead to achieving multiple goals in amphibian research and conservation. Asterisk (*) denotes tissue or methodologies that are not currently used in ARTs but may be possible in the future. NOTE: For a more complete list of ARTs reference Clulow et al. (2014).
-0.2 0.0 0.2 0.4 0.6 PC1 (29.8% of total variance) Fig. 8. Morphospace plot of the first two PCO axes generated in the R statistical environment (Claddis package). Branches are superimposed from a single representative topology selected from amongst the 48 MPTs. in The sauropodomorph biostratigraphy of the Elliot Formation of southern Africa: Tracking the evolution of Sauropodomorpha across the Triassic-Jurassic boundary
-0.2 0.0 0.2 0.4 0.6 PC1 (29.8% of total variance) Fig. 8. Morphospace plot of the first two PCO axes generated in the R statistical environment (Claddis package). Branches are superimposed from a single representative topology selected from amongst the 48 MPTs.
Time-to-fatigue data for five Cypriniformes fish species and R script for data analysis
<p>The Excel file contains data from fixed velocity fatigue experiments for five small-sized Cypriniformes fish species. The recorded data includes common and scientific names of fish species, date and time of test trial, test flume length [cm], flow velocity treatment [cm/s], time-to-fatigue [sec], test water temperature [°C], fish mass [g], fish fork length [cm], fish width [cm], and fish height [cm]. The readme text file explains the column names used in the Excel file. The Rscript file contains the code used to analyse the data.</p>
Results files and R objects for Gilmore et al 2024 SNORD116 analysis
Open the record for dataset details and reuse information.
Fig. 6. R in A documented checklist of the Crustacea (Stomatopoda, Decapoda) of the southern Guianas (Guyana, Suriname, French Guiana, Brazil Amapá)
Fig. 6. R/V Oregon stations in 1957 (black dots) and 1958 (white dots); the dashed rectangle indicates the sGuianas as defined for the present work. The background map is from Bullis & Thompson (1959: fig. 1).
F I G U R E 1 A in Linking plant functional traits to biodiversity under environmental change
F I G U R E 1 A diagram of the linkage between functional traits and biodiversity at multiple ecological scales. Across different scales, the diagram includes the response of functional traits to different environmental conditions, interactions under shifts in community structure and ecosystem functioning, which affect species' survival or extinction, and thus biodiversity. The diagram is constructed following a bottom‐up logic based on individual traits and aims to facilitate future trait‐diversity models to predict biodiversity responses under environmental change.
F I G U R E 1 in Inaugural editorial: Biological Diversity
F I G U R E 1 Number of scientific publications of biodiversity‐related research during the years 1987–2023. "Biodiversity" was used as topic for search in Web of Science.
F I G U R E 2 in Current progress and future prospects for understanding genetic diversity of seed plants in China
F I G U R E 2 Number of articles on genetic diversity for seed plants in different fields. The data comes from the results of Web of Science (www.webofscience.com/wos/alldb/basic‐search, accessed: January 17th, 2024) using the search rule: TS = (seed plant genetic diversity) OR TS = (flowering plant genetic diversity) OR TS = (germplasm genetic diversity) OR TS = (angiosperm genetic diversity) OR TS = (gymnosperm genetic diversity). The numbers in parentheses represent the number of articles published in different fields. The overlapping areas show studies that cover multiple fields.
F I G U R E 1 A in A healing place: Reimagining the modern botanic garden as a physic garden
F I G U R E 1 A modern "physic garden," as I have described here: Royal Botanic Gardens Melbourne (Melbourne Gardens), one of two botanic gardens managed by Royal Botanic Gardens Victoria. Photo: Royal Botanic Gardens Victoria, July 2020.
F I G U R E 1 in Current progress and future prospects for understanding genetic diversity of seed plants in China
F I G U R E 1 Number of articles on genetic diversity in different sequencing stages, with lines of red, blue, and green representing studies for all organisms, plants, and seed plants, respectively. Molecular markers and their first published time are provided in the blue boxes. Three major public databases (NCBI, EMBL, and BioSino) and their established time are shown in the red boxes. The data comes from the results of Web of Science (www.webofscience.com/wos/alldb/basic‐search, accessed: January 17th, 2024) using the search rules: TS = (genetic diversity) for all, TS = (plants genetic diversity) OR TS = (ferns genetic diversity) OR TS = (moss genetic diversity) OR TS = (angiosperm genetic diversity) OR TS = (gymnosperm genetic diversity) for plants, and TS = (seed plant genetic diversity) OR TS = (flowering plant genetic diversity) OR TS = (germplasm genetic diversity) OR TS = (angiosperm genetic diversity) OR TS = (gymnosperm genetic diversity) for seed plants.
Linked collectors and determiners for: R-Algae - Herbário do Museu Nacional.
Natural history specimen data linked to collectors and determiners held within, "R-Algae - Herbário do Museu Nacional". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/f6aedfca-dced-488e-aa07-1490ac520169">https://bionomia.net/dataset/f6aedfca-dced-488e-aa07-1490ac520169</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/f6aedfca-dced-488e-aa07-1490ac520169">https://gbif.org/dataset/f6aedfca-dced-488e-aa07-1490ac520169</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: R-Fungi - Herbário do Museu Nacional.
Natural history specimen data linked to collectors and determiners held within, "R-Fungi - Herbário do Museu Nacional". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/a08cd2a4-5458-4d08-a820-23db24e2219d">https://bionomia.net/dataset/a08cd2a4-5458-4d08-a820-23db24e2219d</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/a08cd2a4-5458-4d08-a820-23db24e2219d">https://gbif.org/dataset/a08cd2a4-5458-4d08-a820-23db24e2219d</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Bitentaculate Cirratulidae (Annelida, Polychaeta) collected chiefly during cruises of the R / V Anton Bruun, USNS Eltanin, USCG Glacier, R / V Hero, RVIB Nathaniel B. Palmer, and R / V Polarstern from the Southern Ocean, Antarctica, and off Western South America.
Natural history specimen data linked to collectors and determiners held within, "Bitentaculate Cirratulidae (Annelida, Polychaeta) collected chiefly during cruises of the R / V Anton Bruun, USNS Eltanin, USCG Glacier, R / V Hero, RVIB Nathaniel B. Palmer, and R / V Polarstern from the Southern Ocean, Antarctica, and off Western South America". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/897dc544-e3e9-46db-b36e-4aa995caabc4">https://bionomia.net/dataset/897dc544-e3e9-46db-b36e-4aa995caabc4</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/897dc544-e3e9-46db-b36e-4aa995caabc4">https://gbif.org/dataset/897dc544-e3e9-46db-b36e-4aa995caabc4</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: R. M. Bohart Museum of Entomology.
Natural history specimen data linked to collectors and determiners held within, "R. M. Bohart Museum of Entomology". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e05f6e7d-418e-4407-8e0f-7b8ccf21109e">https://bionomia.net/dataset/e05f6e7d-418e-4407-8e0f-7b8ccf21109e</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e05f6e7d-418e-4407-8e0f-7b8ccf21109e">https://gbif.org/dataset/e05f6e7d-418e-4407-8e0f-7b8ccf21109e</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Taxonomic review of the species of Helina R. - D. (Diptera: Muscidae) from Andean-Patagonian forests.
Natural history specimen data linked to collectors and determiners held within, "Taxonomic review of the species of Helina R. - D. (Diptera: Muscidae) from Andean-Patagonian forests". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e98edafd-7489-488d-ab8a-276a4a4926a4">https://bionomia.net/dataset/e98edafd-7489-488d-ab8a-276a4a4926a4</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e98edafd-7489-488d-ab8a-276a4a4926a4">https://gbif.org/dataset/e98edafd-7489-488d-ab8a-276a4a4926a4</a>. Formatted as a Frictionless Data package.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.