Find research datasets worth reusing

Supplemental Figure S4. Nitrogen losses through feces, urine and milk as a percentage of the total N intake through feed (indicated by the red line), for each treatment group (CTRL, MetLys and MetLysHis) in each period (depletion, RP-AA, cross-back).

Supplemental Figure S4. Nitrogen losses through feces, urine and milk as a percentage of the total N intake through feed (indicated by the red line), for each treatment group (CTRL, MetLys and MetLysHis) in each period (depletion, RP-AA, cross-back). No significant differences nor tendencies were determined between treatment groups within every period by Tukey’s pairwise comparison test (P > 0.10). During the whole experiment all treatment groups received a low protein diet (CTRL). The cows in the MetLys group received rumen-protected (RP) Met (Excential Rumenpass MET, Orffa Additives) and RP-Lys (AjiPro-L, Ajinomoto H&N) during the RP-AA period. The cows in the MetLysHis group received RP-Met, RP-Lys and RP-His (experimental RP-His product, Ajinomoto Co.) during the RP-AA period.

Supplemental Figure S3. Variation of the His plasma concentration (μmol/L) over 6 time points in the experiment for each treatment group (CTRL, MetLys, MetLysHis).

Supplemental Figure S3. Variation of the His plasma concentration (μmol/L) over 6 time points in the experiment for each treatment group (CTRL, MetLys, MetLysHis). Day 1 is the reference, d18 and d29 are in the depletion period, d54 and d79 in the RP-AA period and d113 in the cross-back period. Day 29, d79 and d113 also represent the last d of each period. During the whole experiment all treatment groups received a low protein diet (CTRL). The cows in the MetLys group received rumen-protected (RP) Met (Excential Rumenpass MET, Orffa Additives) and RP-Lys (AjiPro-L, Ajinomoto H&N) during the RP-AA period. The cows in the MetLysHis group received RP-Met, RP-Lys and RP-His (experimental RP-His product, Ajinomoto Co.) during the RP-AA period. Significant differences (P ≤ 0.05) between groups within a d are indicated by different letters as determined by Tukey’s test.

Supplemental Figure S2. Variation of the Lys plasma concentration (μmol/L) over 6 time points in the experiment for each treatment group (CTRL, MetLys, MetLysHis).

Supplemental Figure S2. Variation of the Lys plasma concentration (μmol/L) over 6 time points in the experiment for each treatment group (CTRL, MetLys, MetLysHis). Day 1 is the reference, d18 and d29 are in the depletion period, d54 and d79 in the RP-AA period and d113 in the cross-back period. Day 29, d79 and d113 also represent the last d of each period. During the whole experiment all treatment groups received a low protein diet (CTRL). The cows in the MetLys group received rumen-protected (RP) Met (Excential Rumenpass MET, Orffa Additives) and RP-Lys (AjiPro-L, Ajinomoto H&N) during the RP-AA period. The cows in the MetLysHis group received RP-Met, RP-Lys and RP-His (experimental RP-His product, Ajinomoto Co.) during the RP-AA period. Significant differences (P ≤ 0.05) between groups within a d are indicated by different letters as determined by Tukey’s test.

Supplemental Figure S1. Variation of the Met plasma concentration (μmol/L) over 6 time points in the experiment for each treatment group (CTRL, MetLys, MetLysHis).

Supplemental Figure S1. Variation of the Met plasma concentration (μmol/L) over 6 time points in the experiment for each treatment group (CTRL, MetLys, MetLysHis). Day 1 is the reference, d18 and d29 are in the depletion period, d54 and d79 in the RP-AA period and d113 in the cross-back period. Day 29, d79 and d113 also represent the last d of each period. During the whole experiment all treatment groups received a low protein diet (CTRL). The cows in the MetLys group received rumen-protected (RP) Met (Excential Rumenpass MET, Orffa Additives) and RP-Lys (AjiPro-L, Ajinomoto H&N) during the RP-AA period. The cows in the MetLysHis group received RP-Met, RP-Lys and RP-His (experimental RP-His product, Ajinomoto Co.) during the RP-AA period. Significant differences (P ≤ 0.05) between groups within a d are indicated by different letters as determined by Tukey’s test.

opencc-by-4.0Jun 2022View details →

Supplemental data to paper "An Extensible Logic Embedding Tool for Lightweight Non-Classical Reasoning"

These files are supplementary material to the paper   An Extensible Logic Embedding Tool for Lightweight Non-Classical Reasoning   Alexander Steen accepted at the Eighth Workshop on Practical Aspects of Automated Reasoning (PAAR 2022), 2022. Files ex1.p, ex2.p and ex3.p correspond to Examples 1, 2, and 3 from the paper in section 5. The *.embed.p files are their embedded variants in classical HOL (THF). In a later update, according to the paper [1], the syntax of NXF and NHF was slightly updated to include an "@"-sign between the non-classical operator {...} and its arguments (...), even in NXF. As a consequence, the examples in this archive have been updated accordingly. Alexander Steen, <alexander.steen@uni-greifswald.de>   [1] Alexander Steen, David Fuenmayor, Tobias Gleißner, Geoff Sutcliffe, Christoph Benzmüller: Automated Reasoning in Non-classical Logics in the TPTP World. PAAR@IJCAR 2022. Available at https://ceur-ws.org/Vol-3201/paper11.pdf

dryad36/100

Yogurt supplementation attenuates insulin resistance in obese mice by reducing metabolic endotoxemia and inflammation

Background Inflammation is an underlying mechanism for development of obesity-related health complications. Yogurt consumption inhibits obesity-associated inflammation, but the tissue-specific mechanisms have not been adequately described. Objectives We aimed to determine the tissue-specific responses by which yogurt supplementation inhibits inflammation. Methods C57BL/6 male mice (5 weeks old) were fed a Teklad Global 14% Protein Rodent Maintenance diet as a control or a high-fat diet (60% calories from fat) to induce obesity for 11 weeks, followed by feeding a Western diet (WD; 43% carbohydrate & 42% fat) or WD supplemented with 5.6 % lyophilized yogurt powder for 3 weeks to test for the impact of yogurt supplementation. Markers of metabolic endotoxemia and inflammation were assessed in plasma and tissues. Cecal and fecal microbiota were profiled by 16S rRNA sequencing. Results In obese mice, relative to the WD control group, yogurt supplementation attenuated HOMA-IR by 57%) (p=0.020), plasma TNF-a by 31% (p<0.05) and colonic IFN-g by 46% (p=0.0034), which were accompanied by a 40% reduction in plasma LBP (p=0.0019) and 45% less colonic Lbp expression (p=0.037), as well as alteration in the beta diversity of cecal microbiota (p=0.0090) and relative abundance of certain cecal microbes (e.g., Lachnospiraceae Dorea longicatena with p=0.049). There were no differences in the LBP, Lbp, and Cd14 levels in the liver and small intestine between obese mice with and without yogurt supplementation (p>0.05). Conclusions Yogurt consumption inhibited obesity-induced inflammation in mice by modulating colonic endotoxin detoxification, changing the gut microbiota, and improving glucose metabolism. This work helps to establish the underlying mechanisms by which yogurt consumption affects markers of metabolic and immune health.

opencc-zeroJan 2023View details →

Electronic supplement for Flannery Sutherland et al. (2023). Dinosaur Trackways from the Upper Cretaceous Technikum Formation near Mayluu Suu City, Southern Tien Shan Mountains, Southwestern Kyrgyzstan

Electronic supplement for Flannery Sutherland et al. (2023).  Dinosaur Trackways from the Upper Cretaceous Technikum Formation near Mayluu Suu City, Southern Tien Shan Mountains, Southwestern Kyrgyzstan Folders R1 and R2 respectively contain the raw photo data, processed photogrammetry models, and topographic false-colour and photo-textured renders of each model

Supplemental Material: Laboratory Packages for Human– Oriented Experiments in Software Engineering: An ACM Badging Approach

This laboratory package contains supplemental material from the study: "Laboratory Packages for Human–Oriented Experiments in Software Engineering: An ACM Badging Approach". The supplementary material contains: 1. The list of the 118 primary studies (Labpacks) classified by journals and conferences. 2. The .xlsx file of the dataset used to analyze the RQs. 3. The list of figures published in the scientific article.

Video supplement for Lagrangian transport simulations using the extreme convection parametrization: an assessment for the ECMWF reanalyses

We provide a video supplement for the paper "Lagrangian transport simulations using the extreme convection parametrization: an assessment for the ECMWF reanalyses" submitted to the journal Geoscientific Model Development.

Supplemental materials for Altered expression of several molecular mediators of cerebral spinal fluid production in Hyp mice

X-Linked Hypophosphatemia (XLH) is a genetic disease causing life-long hypophosphatemia due to overproduction of FGF23. XLH is associated with Chiari malformations, cranial synostosis, and syringomyelia. FGF23 signals through FGFR1c and requires a co-receptor, a-Klotho, which is expressed in the renal distal convoluted tubules and the choroid plexus (ChP). In the ChP, a-Klotho participates in regulating cerebral spinal fluid (CSF) production by shuttling the sodium/potassium adenosine triphosphatase (Na+/K+-ATPase) to the luminal membrane. The sodium/potassium/chloride cotransporter 1 (NKCC1) also makes a substantial contribution to CSF production. Real-time PCR (RT-PCR) demonstrated significant upregulation of Klotho transcripts in the fourth ventricle but a trend toward reduced expression in the lateral ventricles of Hyp mice compared to controls. Transcript levels for Fgfr1c were unchanged in Hyp mice. Na+/K+-ATPase alpha-1 subunit transcripts were downregulated in all three ventricles, reaching significance in the third and lateral ventricles. Expression levels of the Slc12a2 transcript (which encodes NKCC1) were unchanged in Hyp mice compared to controls. In situ hybridization (ISH) was used to obtain anatomical corelates to the changes observed by RT-PCR. ISH confirmed the presence of all four transcripts in the lateral ventricle ChP of both WT and Hyp mice. This is the first study to document a significant change in the level of expression of the molecular machinery required for CSF production in Hyp mice. Whether similar changes occur in patients with XLH, potentially contributing to the cranial and spinal cord abnormalities frequently seen in XLH remains to be determined.

opencc-by-4.0Dec 2022View details →

Supplemental package of a study on the impacts of Covid-19 on software startups and established companies

This package presents the data obtained in a study on the impact of COVID-19 restrictions to software startups and established companies. It contains the questionnaire used to collect data, the answers obtained and a Jupyter notebook containing the analysis performed.

Electronic supplemental material for Mann et al. "Multi-decadal records of shoreline erosion reveal the roles of river delta dynamics, hard protection measures, and other interventions in Eastern Ghana"

Electronic supplemental material for Mann et al. "Multi-decadal records of shoreline erosion reveal the roles of river delta dynamics, hard protection measures, and other interventions in Eastern Ghana" The supplemental material comprises the database "Geodatabase Ghana.mdb" and the MSc thesis by Aleksandra Serwa (Serwa 2017), the results of which built the foundation for the paper. The database contains one layer with all digitized shorelines (HWL_END) as indicated in table 1 of the manuscript, and additional baseline and transect layers that are necessary for the shoreline change analyses with DSAS (Thieler & Danforth 1994). Further information can be found in Serwa (2017). References: Serwa, A., 2017. Shoreline changes in the Keta Municipal District (Ghana): Evidence from multi-decadal records. Master Thesis, Department of Geosciences, University of Bremen, 88 p. Thieler, E.R. & Danforth, W.W., 1994. Historical Shoreline Mapping ( II ): Application of the Digital Shoreline Mapping and Analysis Systems ( DSMS / DSAS ) to Shoreline Change Mapping in Puerto Rico. Journal of Coastal Research, 10(3), pp.600–620.

Unified bursting strategies in ectopic and endogenous even-skipped expression patterns - Supplemental Data

This dataset contains the supplemental data of the article "Unified bursting strategies in ectopic and endogenous even-skipped expression patterns".

Supplemental files for manuscript "The circulating phageome reflects bacterial infections"

These are the supplemental files associated with the manuscript "The circulating phageome reflects bacterial infections". These include: 1. Supplemental File 1 (Phage Dictionary).csv which is a dictionary connecting bacteriophage accession numbers to their known taxonomic data as well as the taxonomic data of their host if known. 2. Supplemental File 2 (Coliphage Characteristics).csv which is a dictionary for phages which infect Escherichia coli including host information to strain if known and characteristics of any known strains. 3. Supplemental File 3 (Metadata).xlsx which includes a metadata table for the plasma cfDNA samples sequenced in the associated study, including infection etiology. 4. Supplemental File 4 (Negative Controls).xlsx which includes the sequences and identities of short reads from our negative sequencing controls (PBS, Water)

openother-closedFeb 2023View details →

Video supplement to "A randomized, controlled, crossover trial of median nerve stimulation for treatment of Tourette syndrome"

Video from the last 60 s of Block 5 (stimulation off) and the first 60 s of Block 6 (stimulation on) from the rhythmic \(\pm \) arrhythmic visits of three study participants who reported substantial improvement in tic severity on at least one visit.

Dataset for: Supplementation of seasonal natural resources with year-round anthropogenic resources by coyotes in natural fragments within a high-density urban area.

Dataset for: Supplementation of seasonal natural resources with year-round anthropogenic resources by coyotes in natural fragments within a high-density urban area.  (Pending publication in Wildlife Biology as of 02/24/2023)

opencc-by-4.0Dec 2022View details →

Montipora capitata multi-omics supplemental tables

Supplemental tables for Montipora capitata multi-omics study. Table S1. Read statistics for the microbiome 16S rRNA data from the four M. capitata colonies (n=3 per treatment/time point/colony). Table S2. Protein and transcript FC values for genes identified in proteomic data. The 138 stress-response related genes are also highlighted. Table S3. Major KEGG pathways used to filter proteins identified in the proteomic data. Table S4. Results from the permutational MANOVA (PERMANOVA) tests run on the transcriptomic, proteomic, and metabolomic datasets. Table S5. Results from the statistical tests run on the alpha- and beta-diversity metrics.

dryad36/100

Dietary fat supplements influence weight gain and egg production but not offspring sex ratios in Japanese quail

Sex ratio theory suggests that females should bias offspring sex ratios based on maternal condition and the availability of critical food resources. Work in birds indicates that females do, indeed, bias sex ratios according to maternal condition and food quality and quantity. Yet it is unknown whether these sex ratio skews occur due to fluctuations in particular micro- or macro-nutrients, caloric content overall, or even the perception of food availability. We hypothesized that dietary fats may drive biases in offspring sex ratios, because measures of maternal condition often reflect fat reserves, and fats are critical for the process of egg-laying in birds. To test this, we provided breeding Japanese quail, a species that biases sex ratios in response to maternal condition, with either a control breeding diet or a diet supplemented with two oils (safflower oil and flaxseed oil). These oils were chosen for their high omega-3 and omega-6 fatty acid content as well as their importance in mammalian sex allocation. We then measured influences of these diets on the sex ratio of offspring, the change in maternal weight, and the laying rates of female quail. The dietary oil supplements increased weight gains in quail but decreased the number of eggs laid during the experiment. There was no influence of the oil supplements on offspring sex ratios. This indicates that fat may not be a macro-nutrient involved in the process of sex ratio adjustment in quail.

opencc-zeroMar 2023View details →

Data supplement for PhD thesis "Pattern Formation with Mass Conservation - From Passive to Active Models"

Here, we provide Mathematica files that provide the details of the weakly nonlinear analysis employed in the PhD thesis "Pattern Formation with Mass Conservation - From Passive to Active Models" submitted by Tobias Frohoff-Hülsmann.