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[OUTDATED] Data set [ref. paper "An innovative automated method for SHM of road pavements based on Hilbert transform"]
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[OUTDATED] Data set [ref. paper "Predictive modeling of drivers' brake reaction time through machine learning methods"]
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Data set [ref. paper "An innovative automated method for SHM of road pavements based on Hilbert transform"]
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Data sets of the article Validation of the Health Protective Sexual Communication Scale (HPSC) in British and Spanish young adults.
<p>Data sets of the article <em>Validation of the Health Protective Sexual Communication Scale (HPSC) in British and Spanish young adults. </em></p> <p>SPSS data sets used to perform Exploratory Factor Anlaysis (EFA) and Confirmatory Factor Analysis (CFA) in Spain and the United Kingdom.</p> <p>SPSS AMOS data sets to perform CFA in Spain and the United Kingdom.</p>
Rotterdam EyePACS AIROGS train set - Part 2/2
<p><em>This version of the dataset is deprecated. Please use <a href="https://zenodo.org/record/5793241">https://zenodo.org/record/5793241</a>.</em></p> <p>The Rotterdam EyePACS AIROGS train set contains 101,442 color fundus images from 54,274 subjects and approximately 500 different sites with a heterogeneous ethnicity. All images were assigned by human experts with the labels referable glaucoma, no referable glaucoma, or ungradable. This dataset contains the data for training data of the AIROGS challenge, which is held as part of ISBI 2022.</p> <p>See <a href="https://airogs.grand-challenge.org/">https://airogs.grand-challenge.org/</a> for more information.</p>
Psychopharmacological treatment in borderline personality disorder: A pilot observational study in a real-world setting
<p>Psychopharmacological treatment in borderline personality disorder: A<br> pilot observational study in a real-world setting</p> <p>Psychotherapy is the cornerstone of treatment for borderline personality disorder (BPD) while pharmacotherapy<br> should be considered only as an adjunctive intervention. In clinical practice, however, most of BPD patients only<br> receive medication. The aim of the study is to first describe pharmacological treatment in BPD patients in Italy<br> and secondly to evaluate if comorbidity or illness severity are associated with the prescription of different class<br> compounds.<br> Data on pharmacological treatment and clinical evaluation of 75 BPD patients were collected in 5 clinical<br> settings. The association between comorbidity and medication was assessed. Moreover, we evaluated the association<br> between pharmacotherapy and severity, defined by a cluster analysis aimed at detecting different groups<br> of patients.<br> Most of the participants (82.7%) were characterized by polypharmacy, with a mean of 2.4 medications per<br> person. Interestingly, the prescription didn’t seem to depend on/be based on the severity of the disorder and was<br> only partially determined by the presence of comorbidity.<br> In conclusion, our findings are similar to what described in other clinical studies, supporting the idea that<br> medication management for BPD is only partially coherent with international guidelines. This pilot study confirms<br> the need for more rigorous studies to gain greater understanding of this topic and diminish the gap between<br> guidelines and the real clinical world.</p>
Data set related to the article: "BPIFB4 Circulating Levels and Its Prognostic Relevance in COVID-19 "
<p>This record contains raw data related to the article: "BPIFB4 Circulating Levels and Its Prognostic Relevance in COVID-19".</p> <p> </p> <p>Abstract</p> <p>Aging and comorbidities make individuals at greatest risk of COVID-19 serious illness and mortality due to senescence-related events and deleterious inflammation. Long-living individuals (LLIs) are less susceptible to inflammation and develop more resiliency to COVID-19. As demonstrated, LLIs are characterized by high circulating levels of BPIFB4, a protein involved in homeostatic response to inflammatory stimuli. Also, LLIs show enrichment of homozygous genotype for the minor alleles of a 4 missense single-nucleotide polymorphism haplotype (longevity-associated variant [LAV]) in BPIFB4, able to counteract progression of diseases in animal models. Thus, the present study was designed to assess the presence and significance of BPIFB4 level in COVID-19 patients and the potential therapeutic use of LAV-BPIFB4 in fighting COVID-19. BPIFB4 plasma concentration was found significantly higher in LLIs compared to old healthy controls while it significantly decreased in 64 COVID-19 patients. Further, the drop in BPIFB4 values correlated with disease severity. Accordingly to the LAV-BPIFB4 immunomodulatory role, while lysates of SARS-CoV-2-infected cells induced an inflammatory response in healthy peripheral blood mononuclear cells in vitro, the co-treatment with recombinant protein (rh) LAV-BPIFB4 resulted in a protective and self-limiting reaction, culminating in the downregulation of CD69 activating-marker for T cells (both TCD4+ and TCD8+) and in MCP-1 reduction. On the contrary, rhLAV-BPIFB4 induced a rapid increase in IL-18 and IL-1b levels, shown largely protective during the early stages of the virus infection. This evidence, along with the ability of rhLAV-BPIFB4 to counteract the cytotoxicity induced by SARS-CoV-2 lysate in selected target cell lines, corroborates BPIFB4 prognostic value and open new therapeutic possibilities in more vulnerable people.</p>
Annotated image training set for the copepod Tigriopus brevicornis
<p>The zip files contain annotated training data on images captured in an experiment of Tigriopus brevicornis. The images are a subset of a much larger imaging dataset, that is part of a master thesis. Annotation was done using the in Computer Vision Annotation Tool. Female copepods with and without eggsac, faecal pellets, nauplii, and the outline of each well were manually labeled using rectangles. The images were captured using an automated imaging platform similar to the one by Heuschele et al 2019. The datasets were exported in the Coco1.0 dataset format. </p>
Data set from the article Malavazos AE, Capitanio G, Milani V, Ambrogi F, Matelloni IA, Basilico S, Dubini C, Sironi FM, Stella E, Castaldi S, Secchi F, Menicanti L, Iacobellis G, Corsi Romanelli MM, Carruba MO, Morricone LF. Tri-Ponderal Mass Index vs body Mass Index in discriminating central obesity and hypertension in adolescents with overweight. Nutr Metab Cardiovasc Dis. 2021 May 6;31(5):1613-1621. doi: 10.1016/j.numecd.2021.02.013. Epub 2021 Feb 23. Erratum in: Nutr Metab Cardiovasc Dis. 2021 Oct 28;31(11):3247-3248. PMID: 33741212.
<p>Data set from the article Malavazos AE, Capitanio G, Milani V, Ambrogi F, Matelloni IA, Basilico S, Dubini C, Sironi FM, Stella E, Castaldi S, Secchi F, Menicanti L, Iacobellis G, Corsi Romanelli MM, Carruba MO, Morricone LF. Tri-Ponderal Mass Index vs body Mass Index in discriminating central obesity and hypertension in adolescents with overweight. Nutr Metab Cardiovasc Dis. 2021 May 6;31(5):1613-1621. doi: 10.1016/j.numecd.2021.02.013. Epub 2021 Feb 23. Erratum in: Nutr Metab Cardiovasc Dis. 2021 Oct 28;31(11):3247-3248. PMID: 33741212.</p> <p> </p> <p>Astract</p> <p> </p>
Data set : Validation of the French version of mental toughness measurement among athletes
<p>Data set:</p> <p> </p> <p><strong>Validation of the French version of mental toughness measurement among athletes </strong></p> <p><strong>Abstract</strong></p> <p>The objective of this study was to evaluate the factorial validity of the translated French version of the questionnaire measuring mental toughness "MTQ48" according to the 4/6Cs (four and six components) theoretical constructs of <a href="#_ENREF_5">Clough et al. (2002)</a>. The 48 items assess the following components: challenge; commitment; emotional and life control; ability and interpersonal confidence; and overall mental toughness (MT) score. The sample consisted of 302 athletes (153 males and 149 females), aged 14-27 years (M 20.25; SD 3.8). The confirmatory factor analysis (CFA) performed by principal component analysis (PCA) with the PROMAX method did not confirm the four and six component theoretical structure of the MTQ48, but a good statistical fit could be obtained with a reduced version of 37 items and three components MTQ37_3C : Challenge-Commitment CC, Confidence CF and Control CT. Cronbach's alpha suggests that each of the three factors has adequate internal consistency (alpha CC = .991; alpha CF = .989; alpha CT = .813). The Kaiser-Meyer-Olkin index for measuring sampling quality was (.991) and Bartlett's sphericity index was (df = 666; p < .001), indicating that CFA is appropriate. MES structural equation modelling confirmed that the 3 factors represent a good model fit (χ² = 678 564, df = 628, CFI = .997, SRMR = .019, RMSEA = .017). In conclusion, our results allowed us to propose a valid and reliable French measure of three components of mental toughness among athletes.</p> <p><strong>Keywords: </strong>mental toughness, French version, validation, confirmatory factor analysis, structural equation modeling.</p> <p> </p> <p><strong>Validation de la version française de la mesure de la force mentale chez les sportifs </strong></p> <p><strong>Résumé</strong></p> <p>L'objectif de cette étude était d'évaluer la validité factorielle de la version française traduite du questionnaire qui mesure la force mentale "MTQ48" selon les constructions théoriques 4/6Cs (quatre et six composantes) du modèle de <a href="#_ENREF_5">Clough et al. (2002)</a>. Les 48 items évaluent les composantes suivantes : le défi ; l'engagement ; le contrôle des émotions et de la vie ; la confiance en capacités et interpersonnelle, ainsi que le score global de la force mentale (FM). L'échantillon était composé de 302 sportifs (153 hommes et 149 femmes), âgés de 14 à 27 ans (M 20.25 ; ET 3.8). L'analyse factorielle confirmatoire (AFC) effectuée par l'analyse des composantes principales (ACP) avec la méthode PROMAX n'a pas confirmé la structure théorique à quatre et six composantes du MTQ48, mais un bon ajustement statistique a pu être obtenu avec une version réduite de 37 items et de trois composantes MTQ37_3C : le Défi- Engagement DE, la Confiance CF et le Contrôle CT. Le coefficient alpha de Cronbach suggère que chacun des trois composantes possède une cohérence interne adéquate (alpha DE = .991 ; alpha CF = .989 ; alpha CT = .813). L'indice de Kaiser-Meyer-Olkin pour mesurer la qualité de l'échantillonnage était de (.991) et l'indice de sphéricité de Bartlett était (df = 666 ; p <.001), indiquant que l'AFC est approprié. La modélisation des équations structurelles MES a confirmé que les 3 composantes représentent un bon ajustement du modèle (χ² = 678 564, df = 628, CFI = .997, SRMR = .019, RMSEA = .017). En conclusion, nos résultats ont permis de proposer une mesure française valide et fiable de trois composantes de la force mentale chez les sportifs.</p> <p><strong>Mots clefs </strong>: force mentale, version française, validation, analyse factorielle confirmatoire modélisation des équations structurelles..</p>
data set from the article De Marco F, Casenghi M, Spagnolo P, Popolo Rubbio A, Brambilla N, Testa L, Bedogni F. A patient-specific algorithm to achieve commissural alignment with Acurate Neo: The sextant technique. Catheter Cardiovasc Interv. 2021 Nov 15;98(6):E847-E854. doi: 10.1002/ccd.29737. Epub 2021 May 7. PMID: 33960624.
<p>data set from the article De Marco F, Casenghi M, Spagnolo P, Popolo Rubbio A, Brambilla N, Testa L, Bedogni F. A patient-specific algorithm to achieve commissural alignment with Acurate Neo: The sextant technique. Catheter Cardiovasc Interv. 2021 Nov 15;98(6):E847-E854. doi: 10.1002/ccd.29737. Epub 2021 May 7. PMID: 33960624</p> <p>abstract:</p> <p><strong>Aims: </strong>The aim of this proof-of-concept study was to investigate safety and efficacy of a CT-scan based patient-specific algorithm to maximize coronary clearance and secondarily to achieve anatomically correct commissural alignment with the Acurate Neo device.</p> <p><strong>Method and results: </strong>A total of 45 consecutive patients undergoing TAVR with the Acurate Neo THV were prospectively enrolled in the study. Mean age was 81.6 ± 5.5 years, mean STS score was 6.1 ± 3.7. Device success rate was 100%. Aim of the technique was to rotationally deploy the TAVR device with a commissure lying on the bisector between the coronary ostia as calculated on the pre-procedural CT-scan. At post-TAVR CT-scan, coronary clearance was achieved in 98% of patients with no cases of severe coronary artery overlap. In 42 out of 45 patients, THV was aligned or, at most, mildly misaligned; there were 2 cases of moderate misalignment without any case of severe misalignment. Post-TAVR selective coronary artery engagement was attempted and succeeded in all patients (100%).</p> <p><strong>Conclusion: </strong>Our CT-scan based patient-specific algorithm is safe and proven to be effective in avoiding coronary artery overlap and providing commissural alignment with Acurate Neo in all treated patients.</p>
The Role of Undercoordinated Sites on Zinc Electrodes for CO2 Reduction to CO (Data Set)
<p>The dataset for the manuscript.</p>
Data set documentation of two surveys to identify and validate the critical success factors (CSFs) in the implementation of Lean Six Sigma (LSS) in Colombian manufacturing SMEs
<p>Documentation describing the data sets of two surveys conducted with the aim of identifying and validating critical success factors (CSFs) in the implementation of Lean Six Sigma (LSS) in manufacturing SMEs in Colombia is included.</p> <p>The first, at a general level and named <strong><em>E1</em></strong>, had the objective of identifying manufacturing SMEs in Colombia that have implemented Lean, Six Sigma or LSS. The second, of a specific level and named <strong><em>E2</em></strong>, was applied in the SMEs found in <strong><em>E1</em></strong> and had the objective of identifying and prioritizing the CSFs in the implementation of LSS and to assess their importance and practice using Likert-type scales. It also made it possible to identify the best-known and most used LSS tools and investigate the specific results of LSS implementation in SMEs.</p> <p>The questionnaire proposed by J. Antony et al. (2008) and adapted by Timans et al. (2012) for LSS was used. The consent to use is included in the documentation. The technical concept of four LSS experts in Colombia was requested to adapt expressions to the context.</p> <p>In the statistical validation phase of the identified CSFs, the estimation of a set of statistical criteria commonly used in psychometric research was made using statistical software SPSS® Version 26 from IBM®. The validation of the factorial structure of the complete model made up of the identified factors and their observable variables was done through a Confirmatory Factorial Analysis using the graphic software SPSS Amos® Version 26 also from IBM®.</p> <p>To build the graphic model the observable variables (statements in the questionnaire E2 of Section III) were represented by rectangles and identified with the letter P (question in Spanish) and with the number according to the order of appearance from 1 to 51 (Example, P1). The critical success factors (CSFs), which are the variables that are not directly measurable or latent, were represented with ovals and identified with the letter F for factor and with the number according to the order of appearance in the questionnaire E2 Section III from 1 through 13 (Example, F1)</p> <p>The following documentary support files are included:</p> <ul> <li><em>Dataset documentation.pdf</em> file</li> <li><em>Consent for the use of the E2 questionnaire.pdf</em> file</li> <li>Anonymized data from <strong><em>E1</em></strong> survey with 352 complete responses in the <em>E1_survey_dataset.exc</em> file.</li> <li>Anonymized data from <strong><em>E2</em></strong> survey with 44 complete responses in the <em>E2_survey_dataset.exc</em> file.</li> <li><strong><em>E1</em></strong> survey instrument with all survey items in the <em>E1_survey_instrument.p</em>df file.</li> <li><strong><em>E2</em></strong> survey instrument with all survey items in the <em>E2_survey_instrument.pdf</em> file.</li> <li>Factorial structure of the CSFs of the initial model in the <em>CFA_CSF </em>Amos file.</li> <li><em>CSFs</em> SPSS file.</li> </ul>
Annotated image training set for the copepod Tigriopus brevicornis
<p>The zip files contain annotated training data on images captured in an experiment of Tigriopus brevicornis. The images are a subset of a much larger imaging dataset, that is part of a master thesis. Annotation was done using the in Computer Vision Annotation Tool. Female copepods with and without eggsac, faecal pellets, nauplii, and the outline of each well were manually labeled using rectangles. The images were captured using an automated imaging platform similar to the one by Heuschele et al 2019. The datasets were exported in the Coco1.0 dataset format. </p> <p> </p>
RadarTSR real data sets
<p>Glass spectra and NIR spectra data sets</p>
Permafrost model for the Argentinian Andes - Calibration data set
<p><strong>Supplementary information to the following publication: </strong></p> <p>Tapia Baldis C, Trombotto Liaudat D. 2020. Permafrost debris-model in Central Andes of Argentina (28°-33° S). Cuadernos de Investigación Geográfica 46, http://doi.org/10.18172/cig.3802</p> <p>------------------------------------------------------------------------------------------------------------------------------------------------------------------------</p> <p>To predict regional-scale spatial patterns of permafrost occurrence, especially over remote environments with limited data, empiric-statistical models are widely used. This kind of approach correlates permafrost occurrence with topo-climatic factors (altitude, geographic position, slope, aspect, air temperature, ground temperature, solar radiation, etc.) easily available, in some cases. Different combinations of empiric-statistical models were tested to evaluate the permafrost spatial distribution in the study area.</p> <p>The study area (28° to 33°S and 70°30’ to 69°W) comprises the middle portion of the South American (Argentinian side) Central Andes (17°30’ to 35°S), named Dry Andes. The landscape is expressed as mountain ranges and valleys with 50% of the terrain surface above 3000 m a.s.l. The highest elevations are represented by mountain peaks such us Mercedario (6850 m a.s.l.) or La Ramada (6400 m a.s.l.). The Dry Andes could be further separated into Desert Andes (17°30’ to 31°S) and Central Andes (31° to 35°S), according to precipitation rates and landscape geomorphological characteristics. </p> <p>Models were trained in a calibration area to evaluate the correlation between geomorphological permafrost indicators (named explanatory variable) and the topoclimatic parameters (predictive variable). A logistic regression model with a logit link function was chosen as a mathematical approach.</p> <p>Data for model calibration was obtained from the Bramadero river basin, located at 31°50’ S and 70°00’ W in the Central Andes. From a geomorphological point of view, the landscape of the Dry Andes is characterized by the interdigitation of glacial, periglacial, alluvial, fluvial, and gravitational processes. The Bramadero river basin was largely glaciated during the LGM, even today it is possible to recognize erosive forms and glacial deposits all over the main valley and subordinated creeks. Even though Quaternary glacial stages modeled the landscape; periglacial features prevail today. Currently, periglacial processes are active in elevations exceeding 2700 m a.s.l. (lowest limit of seasonal freezing), however, a wide variety of periglacial deposits and permafrost indicating cryoforms occur between 3400 and >4500 m a.s.l. (permafrost periglacial belt).</p> <p>The complete geomorphological characterization of the Bramadero river basin and the geomorphometric data extracted from every kind of landform were used to set up the permafrost predictive categories. The first predictive category (presence) includes geoforms that indicate current permafrost, such as; active rock glaciers, inactive rock glaciers, protalus lobes, cryoplanation surfaces, and perennial snow patches. The second category (absence) includes geoforms without current permafrost (relict or fossil rock glaciers, bedrock outcrops, glacial abrasion surfaces, debris/mud flows, and Andean wetlands/peatlands types). It also includes geoforms where the presence of permafrost could not be certainly assessed such us: frozen and unfrozen talus slopes, glaciers and covered glaciers, moraines and morainic complexes, debris/snow avalanches, rock avalanches, and rock slides.</p> <p>The following link can accede model results:</p> <p>Tapia Baldis, Carla. (2018). Permafrost model for the Argentinian Andes - Results and climatic scenarios [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7229820</p>
Data of a set of microsatellite loci for analysis in the scaly sided merganser
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Test data set
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This data set is upload for the K Al ratio manuscript.
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Open Data sets from Cold Climate Wind Farms in Finland, Pori
<p>This dataset includes 6 years of meteorological mast data and operational data from one turbine located in Pori, Western Finland. Dataset also includes simultaneous and longer-term monthly icing time series from WIceAtlas database for reference. Site can be described as an easy site both in terms of icing (IEA Ice Class 2) and terrain complexity. </p> <p>The work was funded by an EU IRPWIND project.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.