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2,880
datasets available to search
ShareScore release 0.9.0
Dataset results
2,880 results for “variant”
Patch-clamp dataset (SyncroPatch384PE) for control variants used in a calibrated functional patch clamp assay to enhance clinical variant interpretation in KCNH2-related long QT syndrome
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Investigating the implications of the <em>MC4R</em> gene variants on health disparities related to caloric intake and body composition in African American women
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Data from: Analysis of VEGFA variants and changes in VEGF levels underscores the contribution of VEGF to polycystic ovary syndrome
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Data from: Haplotype sequence collection of ABO blood group alleles by long-read sequencing reveals putative A1-diagnostic variants
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Phylogenomic data of Litsea complex based on genome-wide single-nucleotide variants (SNVs) and plastomes
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Genomic structural variants constrain and facilitate adaptation in natural populations of Theobroma cacao, the Chocolate Tree
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Variant Call File (VCF) for Genome-wide polymorphism and genic selection in feral and domesticated lineages of Cannabis sativa
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Data from: Whole genome sequencing and rare variant analysis in essential tremor families
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Data for: Genetic prevalence and clinical relevance of canine Mendelian disease variants in over one million dogs
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Data from: Genome-wide exon-capture approach identifies genetic variants of Norway spruce genes associated with susceptibility to Heterobasidion parviporum infection
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Data from: Increased transgenerational epigenetic variation, but not predictable epigenetic variants, after environmental exposure in two apomictic dandelion lineages
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Data from: Population genomics reveals structure at the individual, host-tree scale and persistence of genotypic variants of the undomesticated yeast Saccharomyces paradoxus in a natural woodland
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Five genetic variants explain over 70% of hair coat pheomelanin intensity variation in purebred and mixed breed domestic dogs - Supporting information
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Historical review of terminology applied to cambial variants in Nyctaginaceae
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Data from: HLA-G 14 bp variant is associated with exercise-induced oxygen desaturation in the post-COVID-19 condition
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Rare missense functional variants at COL4A1 and COL4A2 in sporadic intracerebral hemorrhage
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Strain-Induced Variant Selection in Heterogeneous Nucleation of α-Ti at Screw Dislocations in β-Ti
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Data for: Sequencing and variant detection of eight abundant plant-infecting tobamoviruses across Southern California wastewater
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Publicly available GWAS summary statistics, harmonized and imputed to GTEx v8' variant reference
<p># harmonized and imputed GWAS summary statistics</p> <p> </p> <p>* `harmonized_imputed_gwas.tar` contains 114 publicly available GWAS traits, harmonized and imputed to GTEx v8 reference</p> <p> </p> <p>* `gwas_metadata.txt` is a table with useful information about each trait, such as:</p> <p>- Tag: trait name (also in the file name)</p> <p>- PUBMED_Paper_Link: PUBMED or publication URL (if available)</p> <p>- Portal: URL to web portal from which data was downloaded</p> <p>- Consortium: GWAS Consortium authoring the data</p> <p>- Sample_Size: number of individuals covered in the study</p> <p>- Population: individuals'ancestry (EUR, EAS, etc)</p> <p>- abbreviation: short name used for figures</p> <p>- new_abbreviation: alternative name for additional figures</p> <p>- Deflation: whether imputed summary statistics exhibited deflation (i.e. association p-values are lower than expected by chance. The summary statistics imputation method is conservative, and in public GWAS with few observed variants (<2M), the distribution of p-values lags towards lower significance spectrums.</p> <p># Data usage policy</p> <p>When using this data, you must acknowledge the source by citing the publication "Widespread dose-dependent effects of RNA expression and splicing on complex diseases and traits" (https://doi.org/10.1101/814350).</p> <p># Disclaimer</p> <p>The data is provided "as is", and the authors assume no responsibility for errors or omissions. <br> The User assumes the entire risk associated with its use of these data. <br> The authors shall not be held liable for any use or misuse of the data described and/or contained herein. <br> The User bears all responsibility in determining whether these data are fit for the User's intended use. </p> <p>The information contained in these data is not better than the original sources from which they were derived,<br> and both scale and accuracy may vary across the data set. <br> These data may not have the accuracy, resolution, completeness, timeliness, or other characteristics<br> appropriate for applications that potential users of the data may contemplate. <br> <br> The user is responsible to comply with any data usage policy from the original GWAS studies;<br> refer to the list of traits described [here](https://www.biorxiv.org/content/10.1101/814350v1)<br> to identify their respective Consortia's requirements.</p> <p><br> THE DATA IS PROVIDED WITHOUT WARRANTY OF ANY KIND,<br> EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,<br> FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.<br> IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,<br> WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,<br> OUT OF OR IN CONNECTION WITH THE DATA OR THE USE OR OTHER DEALINGS IN THE DATA.</p>
SVXplorer: three-tier approach to identification of structural variants via sequential recombination of discordant cluster signatures
<p>This repository contains the bgzipped variants calls in VCF format for CHM1, NA12878 and AJ trio dataset that are used in the SVXplorer manuscript. The names of the files contain the name of the sample (CHM1/NA12878/HG002/HG003/HG004), the name of the method (SVXplorer/DELLY/LUMPY/TIDDIT/TARDIS/MANTA) used to call the variants. There are three separate files for the DELLY calls which have the deletions, duplications and the inversion calls made by DELLY for each of the samples. For NA12878, there are two sets of calls, one for each of the libraries (ERR194147/SRR505885)</p> <p> </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.