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FIGURE 4 in A trunk-nesting form of the processionary caterpillar Ochrogaster lunifer (Lepidoptera: Notodontidae) restricted to a single host species Corymbia tessellaris (Myrtaceae), with some comparisons to the ground-nesting form
FIGURE 4 Frequency plot of the head capsule widths of Ochrogaster lunifer tree-hugger larvae.
How small deviations in kinematics and body form dictate muscle performances in the finely tuned avian downstroke
<p>Avian takeoff requires peak pectoralis muscle power to generate sufficient aerodynamic force during the downstroke. Subsequently the much smaller supracoracoideus recovers the wing during the upstroke. How the pectoralis work loop is tuned to power flight is unclear. We integrate wingbeat-resolved muscle, kinematic and aerodynamic recordings <em>in vivo</em> with a new mathematical model to disentangle how the pectoralis muscle overcomes wing inertia and generates aerodynamic force during takeoff in doves. Doves reduce the incidence of their wing mid-downstroke to efficiently generate aerodynamic force, resulting in an aerodynamic power dip, that allows transferring excess pectoralis power into tensioning the supracoracoideus tendon to assist the upstroke—improving the pectoralis work loop efficiency simultaneously. Integrating extant bird data, our model shows how the pectoralis of birds with faster wingtip speed need to generate proportionally more power. Finally, birds with disproportionally larger wing inertia need to activate the pectoralis earlier to tune their downstroke.</p>
Observable and ionizing properties of star-forming galaxies with very massive stars and different IMFs
<p>Predicted, observable and ionizing properties of star-forming galaxies with very massive stars and different IMFs.</p> <p>The dataset includes the results from the models described in Table 1 of Schaerer+2024 (https://ui.adsabs.harvard.edu/abs/2024arXiv240712122S/abstract) and additional models.</p>
Dataset: Measurements and simulations of rate coefficients for the deuterated forms of the H2+ + H2 and H3+ + H2 reactive systems at low temperature
<p>Raw measurement data and processign scripts used to produce the reaction rate results in the paper: "Measurements and simulations of rate coefficients for the<br>deuterated forms of the H2+ + H2 and H3+ + H2 reactive systems at low temperature" by Miguel Jiménez-Redondo, Olli Sipilä, Pavol Jusko, and Paola Caselli;</p> <p>DOI: <a href="https://doi.org/10.1051/0004-6361/202451757">10.1051/0004-6361/202451757</a></p>
Dimensions, stability and deformability of DOPC-cholesterol Giant Unilamellar Vesicles formed by droplet transfer – Extended Data
<p>This dataset contains the Underlying Data to the paper “ Dimensions, stability and deformability of DOPC-cholesterol Giant Unilamellar Vesicles formed by droplet transfer”.</p> <ul> <li> “deformation_size” folder containing scatter plots of σ with respect to GUVs rest radii <ul> <li>sd_deform_scatter_H1</li> <li>sd_deform_scatter_H2</li> <li>sd_deform_scatter_H3</li> </ul> </li> <li>“magnetic_device_support” folder containing the .stl files for 3D-printing the magnets-support of the magnetic device <ul> <li>magnetic_device_support_part1</li> <li>magnetic_device_support_part2</li> </ul> </li> <li>“size_distribution_magnetic” folder containing size distribution histograms comparing 100:0 DOPC:cholesterol and 60:40 DOPC:cholesterol samples, under the application of magnetic fields <ul> <li>sd_magnetic_size_dist_allfields</li> <li>sd_magnetic_size_dist_H1</li> <li>sd_magnetic_size_dist_H2</li> <li>sd_magnetic_size_dist_H3</li> </ul> </li> <li>“size_distribution_T0vsON” folder containing size distribution histograms comparing pristine samples (t<sub>0</sub>) and samples after overnight storage (ON), for different DOPC:cholesterol ratios <ul> <li>sd_size_dist_60_40</li> <li>sd_size_dist_71_29</li> <li>sd_size_dist_85_15</li> <li>sd_size_dist_100_0</li> </ul> </li> </ul>
PUDL Raw EIA Form 176 -- Annual Report of Natural and Supplemental Gas Supply and Disposition
<p>The EIA Form 176, also known as the Annual Report of Natural and Supplemental Gas Supply and Disposition, describes the origins, suppliers, and disposition of natural gas on a yearly and state by state basis. Archived from <a href="https://www.eia.gov/naturalgas/ngqs/">https://www.eia.gov/naturalgas/ngqs/</a></p> <p>This archive contains raw input data for the Public Utility Data Liberation (PUDL) software developed by <a href="https://catalyst.coop">Catalyst Cooperative</a>. It is organized into <a href="https://specs.frictionlessdata.io/data-package/">Frictionless Data Packages</a>. For additional information about this data and PUDL, see the following resources: </p><ul> <li><a href="https://github.com/catalyst-cooperative/pudl">The PUDL Repository on GitHub</a></li> <li><a href="https://catalystcoop-pudl.readthedocs.io">PUDL Documentation</a></li> <li><a href="https://zenodo.org/communities/catalyst-cooperative/">Other Catalyst Cooperative data archives</a></li> </ul> <p></p>
User evaluation results for a Wikidata-centric tool for temporal data in Humanities and Cultural Heritage (June 2024): raw tabular result data and web forms for two questionnaires from five online focus group workshops
<p><strong>Introduction</strong></p> <p>This resource is created for the article: "Wikidata Visualization for Event and Temporal Data Exploration in Digital Humanities and Cultural Heritage" in Semantic Web Journal Special issue on the Semantic Web and Ontology Design for Cultural Heritage. It contains materials use for the user evaluation (June 2024) of a Wikidata visualization tool (<a title="ReKisstory" href="https://rekisstory.labs.vu.nl/" target="_blank" rel="noopener">ReKisstory</a>) described in the article. </p> <p><strong>Summary of the user evaluation</strong></p> <p>The structrue of the user evalution is summarized in the table below:</p> <table style="border-collapse: collapse; width: 99.9708%;"><colgroup><col style="width: 28.0622%;"><col style="width: 26.893%;"><col style="width: 27.0309%;"><col style="width: 17.9856%;"></colgroup> <tbody> <tr> <td> </td> <td>Objectives</td> <td>Setup </td> <td># of people participating</td> </tr> <tr> <td>Pre-workshop survey</td> <td>Understanding potential user profiles before workshop</td> <td>Online questionnaire (Q1)</td> <td>51</td> </tr> <tr> <td>Workshop (Focus Group)</td> <td>Introducing and testing the tool. Obtaining feedback about it</td> <td>Online demo, testing, discussion</td> <td>16</td> </tr> <tr> <td>Post-workshop survey</td> <td>Understanding user needs after testing</td> <td>Online questionnaire (Q2)</td> <td>11</td> </tr> </tbody> </table> <p> </p> <p><strong>The structure of the data is as follows:</strong></p> <p>1. The PDF and PPTX files, containing materials prepared for the pre-workshop survey, workshop, and post-workshop survey:</p> <ul> <li>Pre-workshop survey: Questionnaire (Q1) screenshot from GoogleForms <a href="https://zenodo.org/records/14960584/files/1stQuestionnaire.pdf?download=1&preview=1">1stQuestionnaire.pdf</a></li> <li>Post-workshop survey: Questionnaire (Q2) screenshot from GoogleForms <a href="https://zenodo.org/records/14960584/files/2ndQuestionnaire.pdf?download=1&preview=1">2ndQuestionnaire.pdf</a></li> <li>Documents distributed to the participants of the Focus Group Workshop: <ul> <li>ReKisstory Compare section manual <a href="https://zenodo.org/records/14960584/files/rekisstory_compare_manual.pdf?download=1&preview=1">rekisstory_compare_manual.pdf</a></li> <li>ReKisstory Find section manual <a href="https://zenodo.org/records/14960584/files/rekisstory_find_manual.pdf?download=1&preview=1">rekisstory_find_manual.pdf</a></li> <li>ReKisstory Find example search patterns <a href="https://zenodo.org/records/14960584/files/rekisstory_group_search_example_search_patterns.pdf?download=1&preview=1">rekisstory_group_search_example_search_patterns.pdf</a></li> <li>Workshop slides <a href="https://zenodo.org/records/14960584/files/Focus_Group_Workshop_slides.pptx?download=1&preview=1">Focus_Group_Workshop_slides.pptx</a></li> </ul> </li> </ul> <p>2. The Excel spreadsheets consists of the results of two questionnaires (Q1 and Q2) (<a href="https://zenodo.org/records/14960584/files/Two_questionnaires_online_workshops.xlsx?download=1&preview=1">Two_questionnaires_online_workshops.xlsx</a>): </p> <ul> <li>Pre-workshop survey: Questionnaire (Q1), containing information about potential users: <ul> <li>Demographics</li> <li>Experience of <ul> <li>Time-related data</li> <li>Wikidata</li> <li>SPARQL</li> </ul> </li> </ul> </li> <li>Post-workshop survey: Questionnaire (Q2), containing information about feedback from the Workshop participants : <ul> <li>Comparison with Q1</li> <li>Questions about time-related functionalities</li> <li>Questions about Compare and Find searches</li> <li>Overall comment</li> </ul> </li> </ul> <p><em>Please see "Wikidata Visualization for Event and Temporal Data Exploration in Digital Humanities and Cultural Heritage" for more details</em></p>
First record of anti-predator behavior in the gall-forming aphid Mordwilkoja vagabunda
<p>The gall-forming aphid <em>Mordwilkoja vagabunda</em> has been an outgroup in molecular studies of the evolution of social behavior in the <em>Pemphigus </em>genus, but <em>Mordwilkoja</em> aphids have not previously been assayed for social behavior, such as altruistic defense. This study reports experiments carried out in July in Ithaca, NY, USA, in which nymphs (immature aphids) of <em>M. vagabunda</em> were video recorded under a stereo microscope while they encountered pyralid moth larvae in a plastic arena. <em>M. vagabunda</em> nymphs of all instars<em> </em>used their legs to claw moth larvae while pressing their rostrums against the larvae, possibly to pierce the cuticle. Many of the attacking aphids were alatoid nymphs, rather than the specialized first instar soldiers typically observed in <em>Pemphigus</em> species. <em>M. vagabunda</em> nymphs moved in bursts that sometimes became synchronized among several aphids in the same vicinity. These synchronized, rhythmic movements may be anti-predator defense strategies comparable to the collective twitching and kicking response observed in colonies of <em>Aphis nerii</em> and other aphid species. Defensive behaviors by <em>M. vagabunda</em> nymphs may be altruistic fortress defense strategies which maximize inclusive fitness of the clone.</p>
Adaptation of the Texas Christian University Organisational Readiness for Change Short Form (TCU-ORC-SF) for use in primary health facilities in South Africa
<p><b>Objectives: </b>The Texas Christian University Organisational Readiness for Change Scale (TCU-ORC) assesses factors influencing adoption of evidence-based practices. It has not been validated in low- and middle-income countries (LMIC). This study assessed its psychometric properties in a South African setting with the aim of adapting it into a shorter measure.</p> <p><b>Methods: </b>This study was conducted in 24 South African primary health care clinics in the Western Cape Province. The TCU-ORC and two other measures, the Organisational Readiness to Change Assessment (ORCA) and the Checklist for Assessing Readiness for Implementation (CARI) were administered. The questionnaire was re-administered after 2 weeks to obtain data on test-retest reliability. Three hundred and ninety-five surveys were completed: 281 participants completed the first survey, and 118 re-completed the assessments.</p> <p><b>Results: </b>We used exploratory factor analysis (EFA) to identify latent dimensions represented in the data. Cronbach's alpha for each subscale was assessed and we examined the extent to which the subscales and total scale scores for the first and retest surveys correlated. Convergent validity was assessed by the correlation coefficient between the TCU-ORC, ORCA and CARI total scale scores. EFA resulted in a three-factor solution.<b> </b>The three subscales proposed are Clinic Organisational Climate (8 items), Motivational Readiness for Change (13 items), and Individual Change Efficacy (5 items) (26 items total). Cronbach's alpha for each subscale was >.80. The overall shortened scale had a test-retest correlation of <i>r = </i>.80, <i>p </i>< 0.01, acceptable convergent validity with the ORCA scale (<i>r</i> = .56, <i>p </i>< .05), moderate convergence with the CARI (<i>r = </i>39, p<i><</i>.05) and strong correlation with the original scale (r = 0.79, p <i>< </i>.05).</p> <p><b>Conclusions: </b>This study presents the first psychometric data on the TCU-ORC from a LMIC. The proposed shortened tool may be more feasible for use in LMICs.</p>
Updated restraint dictionaries for carbohydrates in the pyranose form
<p>Reproducibility data for the paper entitled "Updated restraint dictionaries for carbohydrates in the pyranose form".</p> <ul> <li>New carbohydrate restraint dictionaries for use in crystallographic software.</li> <li>Output data from testing them by refining a set of glycoprotein structures with REFMAC5.</li> </ul>
Fig. 4. Callichimaeraperplexa n. gen. n in Exceptional preservation of mid-Cretaceous marine arthropods and the evolution of novel forms via heterochrony
Fig. 4. Callichimaeraperplexa n. gen. n. sp., reconstruction. (A and B) Line drawing of dorsal (A) and ventral (B) views. Colorsdenoteconvergent traitswith other decapod groups: light gray, dorsal carapace, similar to some lobsters and †Palaeocorystidae (Brachyura: Raninoida); dark gray, large eyes, similar to †Ekalakia (Dromiacea: †Glaessneropsidae) and several homoloids; red, pediform mxp3 bearing acrista dentata, similarto lobsters, most anomurans, and early-branching brachyurans (Homolodromioidea, most Homoloidea); yellow, spanner-like P1, similar to Hippoidea (Anomura), Raninoidea (Brachyura), and †Retrorsichela; green, flattened paddle-like legs P2 and P3, similar to Matutidae (Brachyura: Eubrachyura); blue, reduced legs P4 and P5, as in hermit crabs (Anomura: Paguroidea), podotreme brachyurans (e.g., Homolodromioidea and Cyclodorippoidea) and early-branchingeubrachyurans (e.g., Dorippoidea); orange, sternites S5 and S6 similar to †Retrorsichela, and Heikeopsis (Eubrachyura: Dorippoidea); and purple, symmetrical pleon lacksarticulatedrings anduropods/uropodal plates, likemost brachyurans. (C and D) Digital reconstruction. (C) Dorsal view. (D) Ventralview. A, pleon; Cx, coxa;Is, ischium; Ma, manus. Scalebar,10 mm. See movies S1 and S2 anddata file S2 for three-dimensional (3D) viewableand printable models. Line drawings by J.L. and 3D reconstructions by A.D.
Fig. 3 in Exceptional preservation of mid-Cretaceous marine arthropods and the evolution of novel forms via heterochrony
Fig. 3. Pleon and sexual dimorphism in Callichimaera perplexa n. gen. n. sp., lower Upper Cretaceous, Colombia. (A) Paratype IMG p881217, female, dorsal view showing thelegs 2 to 5 and thepleonites 1 to 4, two of them bearing anaxialtubercle. (B) Paratype IGMp881209b, female,showing the unfoldedpleon in lateralview and pleonites 2 to 5 andmultiple pairs of pleopods (white arrows). (C) Paratype MUN-STRI 27045-06, female, dorsalview, showing pleonites 1 to 6, theroundish telson, and the lack of uropods or uropodal plates. (D and E) Paratype IGM p881202, male. (D) Ventral view showing the chelipeds, pereopods, and pleon with sclerotized gonopods 1 and 2 [white box; see (E)]. (E) Close-upof sclerotized male gonopods 1 and 2 (white arrows), anarrow pleonite 6, anelongate telson,and the lackof uropods oruropodal plates. (F) Linedrawing of (E). (G) Paratype MUN-STRI 27045-09, a very small individual, possibly a megalopa or early postlarvalstage, preserving small and slender legs 2 and 3 compared to adult forms [see (I)]. (H) Paratype IGM p881220, juvenile, with legs 2 and 3, the pleon bearingan axial tubercle, and with a bifidrostrum anda pairof largecompoundeyesbearinghexagonalfacets (Fig.2G). (I) Paratype IGMp881206,adult female, ventralviewpreservingspanner-likechelipeds,longoar-likelegsor P2 and P3, reduced andslender legsor P4 and P5, and abroad pleon. G1 and G2, malegonopods 1 and 2; Pl1 to Pl6, pleonites 1 to 6; T, telson. All specimens were photographed dry; specimens in (A), (C), (D), and (G) to (I) were coated with ammonium chloride; specimens in (B) and (E) were uncoated. Photos by J.L.
Fig. 6 in Exceptional preservation of mid-Cretaceous marine arthropods and the evolution of novel forms via heterochrony
Fig. 6. Convergent decarcinized body forms in various families of false and true crabs and convergent appendages in swimming and/or fossorial arthropods. (A to I) Decarcinized crabs. (A to D) Anomura. (A to C) Molecrabs,Hippoidea: (A) Hippidae, Hippamarmorata, Taiwan.(B) Blepharipodidae: Blepharipodaoccidentalis. (C) Albuneidae: Albunea occulta, Taiwan. (D) Porcelain crabs, Galatheoidea: Porcellanidae: Euceramus panatelus, Panama. (E to I) Brachyura. (E and F) Frog crabs, Raninoidea: Raninidae: (E) Raninoides benedicti, Panamá. (F) Symethis sp. Panamá. (G and H) Masked burrowing crabs, Eubrachyura: Corystoidea: Corystidae: (G) Corystes cassivelaunus, Belgium. (H) Jonas distinctus, Taiwan. (I) Chimera crab, †Callichimaeroidea: Callichimaeridae: Callichimaeraperplexa n. gen. n. sp., Cenomanian-Turonian (95 to 90 Ma ago) of Colombia. (J to Q) Otheraquatic arthropods with modified appendages for swimming and/or digging. (J) Sea scorpions, Chelicerata: †Eurypterida: Eurypterusremipes, YPM 211521, upper Silurian, New York. (K to M) Insecta. (K) Coleoptera: Dytiscidae: Cybisterfimbriolatus, YPMENT.959234; (L) Hemiptera: Corixidae: Hesperocorixa kennicottii, YPM ENT.452851; (M) Hemiptera: Notonectidae: Notonectaundulate, last instarnymph, Alberta, Canada. (N) Isopoda: Munnopsidae: Munnopsis longiremis, USNM 113282, Baja California, Mexico. (O to Q) Brachyura. (O) Orithyioidea: Orithyiidae: Orithyia sinica, USNM 134243, China. (P) Calappoidea: Matutidae: Matutavictor. (Q) Portunoidea:Portunidae:Arenaeus cribrarius. Photosby T. Y. Chan (A, C, and H), C. Boyko (B), A. Anker (D, E, and N), J.L. (F and O), H. Hillewaert (G), J. Utrup (J), E. Lazo-Wasem (K and L), J. Acorn (M), and O. Radosta (P and Q).
Fig. 2 in Exceptional preservation of mid-Cretaceous marine arthropods and the evolution of novel forms via heterochrony
Fig. 2. Dorsal, frontal, and ocular features in Callichimaera perplexa n. gen. n. sp., from the mid-Cretaceous of Colombia. (A and B) Paratype MUN-STRI 27044-02, showing three specimensin dorsal view (left), ventral view (right), and anisolated dorsal carapace (bottom center). (A) Color image. (B) Inverted color image highlighting details of thecarapace outlines, clawsand legs, andlarge eyes. (C) Paratype IMGp881203, dorsalview, showingdetails of thecarapace groovesandridgesandthelackof true orbits. (D) Paratype IMGp881218, dorsal view, showing details of dorsal carapace, claws, andlarge oar-like legs 2 and 3. (E and F) Paratype IGM p881209a.(E) Scanning electron microscope (SEM) image showing details of large compound eye, optical lobe, rostrum (R), and two pairs of short antennae between the eyes. (F) SEM showing aclose-upof theoptical lobe. (G) Paratype IGMp881220,SEM oflargeeyepreservingmostlyhexagonalfacetsinhexagonalarrangement (left box), althoughtheproximal cornea bears squarishfacets inorthogonal packing (right box). (H to J) Paratype IGMp881208, ventral view,(H) showing thelargeeyes and bifidrostrum,(I) SEMof ventral right eye, and (J) SEMof ventralleft eye.An1, antenna 1 orantennula; An2,antenna 2; Bcg, branchio-cardiac groove; Cg, cervical groove; E, compound eye; Lr,longitudinal ridge; Ol, opticallobe; Pfr, postfrontal longitudinal ridge; Pgr,protogastric longitudinal ridge.All specimenswere photographed dry; specimensin (C) and (D) were coated with ammonium chloride; specimens in (A), (B), and (E) to (J) were uncoated. Photos by J.L.
Fig. 1 in Exceptional preservation of mid-Cretaceous marine arthropods and the evolution of novel forms via heterochrony
Fig. 1. Ventraland appendicularfeatures in Callichimaera perplexa n. gen. n. sp., fromthemid-Cretaceous of Colombia. (A to C) Holotype IGM p881215.(A) Ventral view. (B) Close-up of sternal plates, sutures, and linea media (lm); the white arrow shows a spine in the third leg coxae. (C) Close-up of sternal crown, mandibles, and maxillipeds 2 and 3, thelatterbearingarowof spinesorcristadentata (cd) intheischium. (D and E) Paratype IGMp881196. (D) Ventralview. (E) Close-upof sternumand sutures. (F) Paratype IGM p881185, showingdetails of thespanner-like claw. (G to I) Paratype IGM p881214. (G) Close-up of the large oar-like legs 2 and 3. (H) Ventralview showing the sternites, claws, legs, and pleon. (I) Close-up of the reduced and slender legs 4 and 5. Ba, basis; Ca, carpus; Da, dactylus; Pr, propodus; Ma, mandibula; Me, merus; Mxp2 and Mxp3, second and third maxillipeds, respectively; P1, claw or cheliped; P2 to P5, pereopods or legs 2 to 5; Po, pollex or fixed finger tip; Pl, pleon or "abdomen"; S1 to S7, sternites 1 to 7; 4/5–6/7, sternal sutures. All specimens were photographed dry; specimens in (A), (D), (E), (G), and (H) were coated with ammonium chloride; specimensin (B), (C), (F), and (I) were uncoated. Photos by J.L.
Fig. 5 in Exceptional preservation of mid-Cretaceous marine arthropods and the evolution of novel forms via heterochrony
Fig. 5. Phylogenetic relationships among the main families, superfamilies, and sections of "true" crabs or Brachyura. Tree topology after figs. S5 and S6. Each color and letter (encircled) represents one of the nine major brachyuran evolutionary branches. Dromiacea (red) (A) and Homoloida (purple) (B) are first known from the Jurassic, while †Callichimaeroida section nov. (dark blue) (C), †Torynommoida (light blue) (D), †Etyoida (dark green) (E), Raninoida (light green) (F), †Dakoticancroida (yellow) (G), Cyclodorippoida (orange) (H), and Eubrachyura or "higher" brachyurans (brown) (I) are all first known from the Cretaceous.Thick solid lines represent the ages of the first and last occurrences of each family within the main lineages. Dotted lines and daggers indicate extinct taxa; solid lines indicate living taxa. Black triangles indicate that in Anomura,decarcinization has occurred twice (anomuran clades not illustrated).White triangles indicate the three Brachyura lineages where decarcinization has occurred. Figure by J.L.
Raw data for the article "Asymmetric Cyclopropanation and Epoxidation via a Catalytically Formed Chiral Auxiliary"
<p>Raw NMR, HPLC, IR and MS data for the article "Asymmetric Cyclopropanation and Epoxidation via a Catalytically Formed Chiral Auxiliary" published in Angewandte Chemie, International Edition, DOI: </p> <p><a href="https://doi.org/10.1002/anie.202113925 ">https://doi.org/10.1002/anie.202113925 </a> </p> <p>The number of the folders correspond to compounds numbers in the article. All details concerning conditions and equipment for measurements can be found in the supporting information of the article.</p>
Project files provided as supporting information to the manuscript "Membrane binding of pore-forming gamma-hemolysin components studied at different lipid compositions"
<p><strong>Project files provided as supporting information to the manuscript "Membrane binding of pore-forming gamma-hemolysin components studied at different lipid compositions"</strong></p> <p>The dataset contains the following folders:</p> <p>- number_of_contacts: files with the number of contacts between the rim domains of LukF and Hlg2 and the membrane, for different bilayer compositions (Fig. 2).</p> <p>- binding_events: files with the duration of the time interavals in which LukF and Hlg2 are bound to the membrane, and the scripts used to compute for each system the number of binding/unbinding events and the average membrane residence time (Fig. 3).</p> <p>- electrostatic_potential: files of the surface electrostatic potential produced with the adaptive Poisson-Boltzmann solver and used for visualization with Chimera (Fig. 4).</p> <p>- angles: files with the angle values computed between the protein axis and the z-axis of the simulation box (Fig. 5).</p> <p>- contacts_per_residue: files with the number of frames in which each protein residue is in contact with the membrane, with respect to the total number of frames in which the rim domain interacts with the bilayer (Fig. 5).</p> <p>- distance_protein_membrane: files with the minimum distance between the protein and the membrane (Fig. 6).</p> <p>- binding_sites: file produced by PyLipid with relevant information on the main DOPC binding sites identified in LukF.</p> <p>- min_distance_per_residue: files with the minimum distance between each protein residue and the membrane, computed at the binding steps (Fig. S5).</p>
Data from: Partial mycoheterotrophy in green plants forming Paris-type arbuscular mycorrhiza requires a thorough investigation
<p>Recently, many green plants forming <em>Paris</em>-type arbuscular mycorrhiza (AM) have been suggested to receive fungal carbon (Giesemann <em>et al.</em> 2020b, 2021). Whereas the enrichment of natural abundance of heavy stable isotopes (particularly <sup>13</sup>C) has been considered as strong evidence for this 'partial mycoheterotrophy,' we show our own data on isotopic abundances and mycorrhizal colonization in Japanese plants and argue that the <sup>13</sup>C-enrichment may not always be the result of acquiring carbon from AM fungi.</p>
Figure 9 in Stabilizing selection to maintain the two male forms of the jumping spider Maevia inclemens (Araneae: Salticidae: Marpissina)
Figure 9. Five sequential matings (1-2, 3, 4, 5-6, 7) of the two male forms with the same female Maevia inclemens over the course of five days. 1-2, This mating was interrupted as the male switched from one side to the other, but after an atypical low crawl display with legs I extended, the tufted male quickly recaptured the female and continued to mate on the other side. 5-6, mating on the right and then left sides. Note the many erect spines on the legs of the mating male in each instance.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.