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Figure 2 in Population Genetic Structure of Testudo hermanni boettgeri (Hermann's Tortoise) in Türkiye
Figure 2.UPGMA distance tree created using the Reynolds (1983) weighted model (the node values are bootstrap values estimated with 1000 permutations).
Figure 1 in Population Genetic Structure of Testudo hermanni boettgeri (Hermann's Tortoise) in Türkiye
Figure 1. Sampling localities of T. h. boettgeri (Loc 1: Malkara, Loc 2: Orhaniye, Loc 3: Hanlıyenice, Loc 4: Adasarhan, Loc 5: Balabanlı, Loc 6: İpsala, Loc 7: Hacılar, Loc 8: Şeytanderesi, Loc 9: Meriç, Loc10: Taşlısekban, Loc 11: Kırklareli, Loc 12: Çöpköy, Loc 13: Demirköy, Loc 14: Erikler, and Loc 15: Keşan; the colorations symbolize the clusters).
Figure 3 in Population Genetic Structure of Testudo hermanni boettgeri (Hermann's Tortoise) in Türkiye
Figure 3. Population assignment test performed with Structure. (A) Barplots that estimated membership coefficients of the analyzed individuals in each locality. (B) Barplot, K = 2, clusters for 8 groups in the UPGMA distance tree. (C) Graph of ∆K as a function of the number of groups K, (Evanno's method) (the numbers on the barplots symbolize the sampling localities).
Figure 4 in Population Genetic Structure of Testudo hermanni boettgeri (Hermann's Tortoise) in Türkiye
Figure 4. Maps of the population clusters (K) identified by GENELAND. (A) Map spatial distribution of each group defined, K = 2. (B) Map of the posterior probability defined, K = 2 (the numbers symbolize the sampling localities, the colors in A and B symbolize the clusters inferred in STRUCTURE).
Fig. 4 in Pattern Of Genetic Variation Of Bottlenose Dolphins In Chinese Waters
Fig. 4. Plylogenetic reconstruction of Turisops mitochondrial control region haplotypes and some haplotypes of striped dolphin Stenella coeruleoalba and common dolphin Delphinus delphis, reconstructed using the neighbor joining algorithm with short-finned pilot whale Globicephala macrorhynchu as outgroup. Bootstrap values from 500 iterations are indicated near branches. Haplotype codes correspond to the codes in figure 1.
Fig. 1 in Pattern Of Genetic Variation Of Bottlenose Dolphins In Chinese Waters
Fig. 1. Locations where bottlenose dolphins were sampled. Numerals within the square and circle symbols represent the sample size for truncatus-type and aduncus-type, respectively. QD, Qingdao, LYG, Lianyungang, ZS, Zhoushan, XM, Xiamen, DS, Dongshan, TS, Taiwan Strait, BH, Beihai
Fig. 7 in Genetic and morphological variation of metacercariae of Microphallus piriformes (Trematoda, Microphallidae): Effects of paraxenia and geographic location
Fig. 7. Variability of metacercarial body shape within hemipopulations and infrapopulations of M. piriformes. A: Absolute and relative morphological disparity (MD) of metacercariae within hosts of the same species. B: Distribution of morphological disparity (MD) within individual snails grouped by host species and sampling location.
Fig. 4 in Genetic and morphological variation of metacercariae of Microphallus piriformes (Trematoda, Microphallidae): Effects of paraxenia and geographic location
Fig. 4. Haplotype networks, COI sequence (369 bp); TCS algorithm; dashes correspond to mutations. A: color reflects sampling location. B: color reflects host species.
Fig. 5 in Genetic and morphological variation of metacercariae of Microphallus piriformes (Trematoda, Microphallidae): Effects of paraxenia and geographic location
Fig. 5. PCA-ordination of individual M. piriformes metacercariae body shapes grouped by host species. PC1 can be interpreted as a deepness of a "waist" between locomotory and generative body parts; PC2 can be interpreted as a width of locomotory body part. B: Pairwise post-hoc comparison; significant value are shown as bold (considering Holmes correction for multiple comparison); host species: sax – L. saxatilis; obt – L. obtusata; sampling site: Kib - Barents Sea, Kiberg; Kor – White Sea, Korga-Islet; Zel – Barents Sea, Dalnie Zelentsy.
Fig. 1 in Genetic and morphological variation of metacercariae of Microphallus piriformes (Trematoda, Microphallidae): Effects of paraxenia and geographic location
Fig. 1. The map of the study region (image: TerraMetrics, map data: Google). Sample collection sites (Tromsø city, Kiberg settlement, Dalnie Zelentsy settlement, Sredny Island) are shown.
Fig. 8 in Genetic and morphological variation of metacercariae of Microphallus piriformes (Trematoda, Microphallidae): Effects of paraxenia and geographic location
Fig. 8. Body size of M. piriformes metacercariae from different host species and sampling locations. Mean centroid size and 95% confidence interval obtained via bootstrap.
Fig. 3 in Genetic and morphological variation of metacercariae of Microphallus piriformes (Trematoda, Microphallidae): Effects of paraxenia and geographic location
Fig. 3. Bayesian inference based on COI sequence (369 bp); 15000000 generation; GTR + I + G substitution model; A posteriori probabilities are indicated by node shapes; sample name includes parasite species (pir – M. piriformes, pyg – M. pygmaeus, tri – M. triangulatus, sim – M. similis), sample number, geographic region and location (WSk – White Sea, Korga-Islet; WSy – White Sea, Yakovleva; DZe – Barents Sea, Dalnie Zelentsy; Kib - Barents Sea, Kiberg; Tro - Norwegian Sea, Tromsø), host species (sax – L. saxatilis; arc – L. arcana; comp – L. compressa; obt – L. obtusata; fab – L. fabalis). Identical haplotypes and the FST-value of differentiation between populations (Weir, and Cockerham, 1984) are shown in Supplementary Table 1. Branch color reflects geographic region.
Fig. 5 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 5. Decision tree used for specimens euthanized to obtain tissue. Blue indicates steps in the decision tree. Green indicates procedures that will lead to preservation of tissues for genetic study. Purple indicates procedures that lead to achieving multiple goals, including cell culture and obtaining gametes for current or future ARTs. NOTE: Breeding and IVF can result in offspring that can be used for genetic purposes, thereby achieving multiple goals.
Fig. 6 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 6. Decision tree used to obtain tissue from live animals. Blue indicates steps in the decision tree. Green indicates procedures that will lead to preservation of tissues for genetic study. Purple indicates procedures that lead to achieving multiple goals, including obtaining gametes for current or future ARTs. NOTE: Breeding and IVF can result in offspring that can be used for genetic purposes, thereby achieving multiple goals.
Fig. 4 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 4. Length of time from cell culture initiation to freezing for amphibian cell lines in San Diego Zoo's Frozen Zoo®. Low = 19 days; high = 596 days; average = 154 days.
Fig. 3 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 3. The "tissue piecing" protocol used to preserve viable cells for establishment of cell lines in the future. A) Tissue is cut into long, thin strips. B) Tissue is diced into 1 mm3 fragments before adding medium containing 10% DMSO as a cryoprotectant. C) Prepared tissue is stored in LN2 until future cell culture is possible; those without cell culture capability can transport samples using a dry shipper to maintain cold-chain.
Fig. 2 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 2. Procedures used to obtain amphibian eggs or sperm for use in ARTs. A) Gravid female Leopard Frog (Lithobates sp.) after gonadotropic hormone injection. B) Expressing eggs into container by pressing on abdomen and pushing thumb toward cloaca; eggs can be fertilized (i.e., IVF) by fresh or cryopreserved sperm. Sperm can similarly be released from males by pushing towards the cloaca and releasing sperm naturally (in season) or after injection of gonadotropic hormones (e.g., HIS).
Fig. 1 in P e r s p e c t i v e Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation
Fig. 1. Role of genetic resource collections in the research and conservation of amphibians. Green indicates the storage of tissues in biobanks. Purple indicates procedures associated with ARTs that lead to achieving multiple goals in amphibian research and conservation. Asterisk (*) denotes tissue or methodologies that are not currently used in ARTs but may be possible in the future. NOTE: For a more complete list of ARTs reference Clulow et al. (2014).
Fig. 2 in Genetic and chemical profiling of Solenopsis spp. (Hymenoptera: Formicidae) intercepted in Hawaii
Fig. 2. The Gas Chromatography-Mass Spectrometry (GC-MS), total ion chro- matogram (TIC) of a methanol extract of a gaster from a single ant intercepted in 2019 at a port in Hawaii. The reported major venom alkaloids from Solenopsis geminata and Solenopsis xyloni are cis-2-methyl-6-undecyl-piperidine (peak 1) and trans-2-methyl-6-undecyl-piperidine (peak 3). This intercepted Solenopsis geminata worker has 2-methyl-6-undecyl-pyridine (peak 2) as its major component. The areas under peaks 1, 2, and 3 are proportional to their quantity. This is expressed on the graph as the percent composition of the 3 identified peaks. This is the first time that the pyridine (peak 2) has been reported as a major venom component of Solenopsis geminata. Components 1 and 3 have been identified in previous literature.
Fig. 1 in Genetic and chemical profiling of Solenopsis spp. (Hymenoptera: Formicidae) intercepted in Hawaii
Fig. 1. Unrooted neighbor-joining tree constructed using the matrix of absolute numbers of pairwise differences among 55 mitochondrial COX1 haplotypes from 6 Solenopsis species: S. geminata, S. xyloni, S. amblychila, S. aurea, S. invicta, and S. saevissima. All positions containing gaps and missing data were eliminated. Bootstrap values greater than 70% are located below or above nodes. The scale bar distance is shown at the top right corner of the tree indicating number of nucleotide differences. Each sequence was identified by their GenBank number and species name, except for the Oahu sample (GenBank OK071254) marked as Oahu 2018* and the haplotype from the 2019 samples (GenBank OK071253) labelled Ltu19_03**.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.