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Figure 2 in Discovery of new species of New Caledonian Arsipoda Erichson, 1842 (Coleoptera: Chrysomelidae) and insights on their ecology and evolution using DNA markers
Figure 2. Mitochondrial phylogeny of New Caledonian Arsipoda Erichson. (A) Arsipoda agalma Samuelson, a representative New Caledonian species (scale bar = 1 mm). (B) Most parsimonious tree for mitochondrial DNA data of New Caledonian Arsipoda with bootstrap support measures in unweighted (above branches) and weighted (below branches) analyses, treating gaps as missing data (top value) or a fifth character state (bottom value). (C) Best topology of maximum likelihood analysis for the same data showing bootstrap support values.
Figure 1 in Discovery of new species of New Caledonian Arsipoda Erichson, 1842 (Coleoptera: Chrysomelidae) and insights on their ecology and evolution using DNA markers
Figure 1. Distribution of Arsipoda Erichson in New Caledonia (from Samuelson, 1973) and geographic source of samples available for phylogenetic analysis with locality data as in Table 1.
FIGURE 1. A in Molecular and morphological diagnostic markers for the Himalayan Ips DeGeer species (Coleoptera: Curculionidae: Scolytinae)
FIGURE 1. A joint phylogenetic tree obtained from the NJ and Bayesian inference for the COI genes of Ips and outgroups. Numbers above the nodes represent bootstrap values and the numbers in parentheses below the nodes indicate Bayesian posterior probabilities.
Figure 3 in Phylogeny, phylogeography, and systematics of the American pea crab genus Calyptraeotheres Campos, 1990, inferred from molecular markers
Figure 3. Histogram of Kimura two-parameter genetic distances for (A) the cytochrome oxidase I and (B) the large ribosomal subunit (16S) data sets. Species and number of specimens used for intraspecific and interspecific distance calculations are detailed in Table 1.
Figure 4. A in Phylogeny, phylogeography, and systematics of the American pea crab genus Calyptraeotheres Campos, 1990, inferred from molecular markers
Figure 4. A, median-joining haplotype network for cytochrome oxidase I (COI) mtDNA sequences of Calyptraeotheres garthi, including some samples of Calyptraeotheres hernandezi and Calyptraeotheres politus. Area of the circles is proportional to the number of individuals of each haplotype found. White dots represent missing, probably unsampled, haplotypes or extinct lineages. Lines between circles represent additional mutational steps. B, mismatch distributions of C. garthi. Solid lines indicate the observed distribution, and dashed lines indicate the expected distribution. C, Bayesian skyline plot based on COI sequences of C. garthi showing change in population size through time. The y-axis is the product of effective population size (Ne) and generation length (t) on a log scale. The heavy solid line is the median estimated under the assumption of a per site mutation rate of 1.66% million years-1, and the dotted lines indicate 95% highest posterior density regions. Abbreviations: ARI, Arica; CAR, Caraguatatuba; ICU, Isla Cubagua; MDP, Mar del Plata; PMO, Puerto Montt; RIA, Ría de San António; SCL, San Clemente; SOT, El Sótano.
Figure 1 in Phylogeny, phylogeography, and systematics of the American pea crab genus Calyptraeotheres Campos, 1990, inferred from molecular markers
Figure 1. Distribution of species of Calyptraeotheres in the Americas (dark grey) with collection sites (black stars). Abbreviations: ARI, Arica; CAR, Caraguatatuba; ICO, Ilha Comprida; ICU, Isla Cubagua; IPR, Ilha Prumirim; MDP, Mar del Plata; PMO, Puerto Montt; RIA, Ría de San António; SCL, San Clemente; SOT, El Sótano.
Figure 2 in Phylogeny, phylogeography, and systematics of the American pea crab genus Calyptraeotheres Campos, 1990, inferred from molecular markers
Figure 2. Bayesian (BAY) tree for Calyptraeotheres species, Tumidotheres maculatus, Dissodactylus crinitichelis, and selected outgroups (Austinixa aidae and Austinixa patagoniensis) based on the cytochrome oxidase I (COI) and large ribosomal subunit (16S) concatenated data set. Values represent bootstrap and Bayesian posterior probabilities (maximum likelihood/maximum parsimony/BAY) expressed as percentages. Values ³ 50% are not shown. The Calyptraeotheres subdivision proposed by Hernández-Ávila & Campos (2006) is highlighted in grey.
Figure 5 in Evolutionary relationships among American mud crabs (Crustacea: Decapoda: Brachyura: Xanthoidea) inferred from nuclear and mitochondrial markers, with comments on adult morphology
Figure 5. Ventral view of the anterior portion of the thoracic sternum. A, Panopeus herbstii (ULLZ 8457); B, Rhithropanopeus harrisii (ULLZ 3995); C, Pseudorhombila quadridentata (ULLZ 9326); D, Chacellus filiformis (ULLZ 12296). Lines in A indicate the length and width dimensions of the anterior portion of the thoracic sternum.
Figure 4 in Evolutionary relationships among American mud crabs (Crustacea: Decapoda: Brachyura: Xanthoidea) inferred from nuclear and mitochondrial markers, with comments on adult morphology
Figure 4. Apex of the first gonopod (first male pleopod). A, Pseudorhombila quadridentata (ULLZ 9326); B, Chacellus filiformis (ULLZ 12296); C, Panopeus herbstii (ULLZ 8457); D, Rhithropanopeus harrisii (ULLZ 3995). Arrows and lines indicate measurements taken for preliminary morphometric analyses of sternal proportions.
Figure 3 in Evolutionary relationships among American mud crabs (Crustacea: Decapoda: Brachyura: Xanthoidea) inferred from nuclear and mitochondrial markers, with comments on adult morphology
Figure 3. Stylized drawing of the dactylus of the 5th pereopod. A, typical American xanthid; B, typical panopeid; C, typical pseudorhombilid. Arrow indicates distinct, subterminal, calcareous tooth.
Figure 1 in Evolutionary relationships among American mud crabs (Crustacea: Decapoda: Brachyura: Xanthoidea) inferred from nuclear and mitochondrial markers, with comments on adult morphology
Figure 1. Phylogenetic relationships among selected representatives of Xanthoidea sensu Ng et al., 2008 inferred by ML analysis of 2788 bp of a concatenated 12S, 16S, COI, 18S, ENO and H3 dataset. Confidence values are 1000 bootstrap ML values followed by Bayesian posterior probabilities. Values below 50 are indicated by '–'. Brackets and associated names represent the primary clades discussed.
Figure 11. Phylogenetic relationships within the Xiphinema americanum-group complex. Bayesian 50 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 11. Phylogenetic relationships within the Xiphinema americanum-group complex. Bayesian 50% majority rule consensus tree as inferred from partial cytochrome c oxidase subunit I (coxI) sequence alignment under a transversional of invariable sites and gamma-shaped distribution model TVM + I + G model. Posterior probabilities more than 65% are given for appropriate clades; bootstrap values greater than 50% are given on appropriate clades in the maximum likelihood analysis. Sequences newly obtained in this study in this study are in bold. Scale bar = expected changes per site.
Figure 7 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 7. Factor analysis of 11 morphometric characters used to characterize Xiphinema plesiopachtaicum sp. nov., Xiphinema vallense sp. nov., and Xiphinema pachtaicum-subgroup species. Left-hand side of panels: projection of morphometric characters on the plane of factors 1 and 2 (A), 1 and 3 (B), 1 and 4 (C), and 2 and 3 (D). Abbreviations: L, body length; V, (distance from anterior end to vulva/body length) × 100; OaGR, oral aperture-guiding ring distance; Lip, lip region width; Tail, female tail length; Hyaline, hyaline region length; a, body length/maximum body width; b, body length/pharyngeal length; c, body length/tail length; c′, tail length/body width at anus.
Figure 6 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 6. Light micrographs of Xiphinema astaregiense sp. nov. A, B, entire female and male, respectively. C–F, female neck region. G, pharyngeal bulb. H, vulval region. I–K, female tail regions from different specimens showing the morphological variability. L, M, male tail region, ventromedian supplements arrowed. Abbreviations: a, anus; gr, guiding ring; V, vulva. Scale bars: A, B = 200 μm; C–M = 20 μm.
Figure 4 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 4. Light micrographs of Xiphinema vallense sp. nov. A, entire female. B, E, female neck region. C, D, F, female lip region. G, vulval region. H–M, female tail regions from different specimens showing the morphological variability. N–O, male tail, ventromedian supplements arrowed. Abbreviations: a, anus; gr, guiding ring; V, vulva. Scale bars: A = 200 μm; B–O = 20 μm.
Figure 3 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 3. Light micrographs of Xiphinema plesiopachtaicum sp. nov. A, entire female. B, female neck region. C, D, female lip region. E, vulval region. F–K, female tail regions from different specimens showing the morphological variability. Abbreviations: a, anus; gr, guiding ring; V, vulva. Scale bars: A = 100 μm; B–K = 20 μm.
Figure 8 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 8. Factor analysis of 11 morphometric characters used to characterize Xiphinema plesiopachtaicum sp. nov., Xiphinema vallense sp. nov., and Xiphinema pachtaicum-subgroup species. Projection of Xiphinema americanum- group species on the plane of factor 1 and 2 (A), 1 and 3 (B), 1 and 4 (C), and 2 and 3 (D).
Figure 1 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 1. Line drawings of: A–D, Xiphinema plesiopachtaicum sp. nov.; E–H, Xiphinema vallense sp. nov.; I–L, Xiphinema astaregiense sp. nov. A, E, I, female lip regions. B–D, F, G, J, K, female tail regions. H, L, male tail regions.
Figure 2 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 2. Line drawings of pharyngeal bulb and anterior genital branch of: A, B, Xiphinema plesiopachtaicum sp. nov.; C, D, Xiphinema vallense sp. nov.; E, F, Xiphinema astaregiense sp. nov.
Figure 10. Phylogenetic relationships within the Xiphinema americanum-group complex. Bayesian 50 in Cryptic diversity and species delimitation in the Xiphinema americanum-group complex (Nematoda: Longidoridae) as inferred from morphometrics and molecular markers
Figure 10. Phylogenetic relationships within the Xiphinema americanum-group complex. Bayesian 50% majority rule consensus tree as inferred from internal transcribed spacer 1 (ITS1) rRNA sequence alignment under the general timereversible and gamma-shaped distribution model. Posterior probabilities more than 65% are given for appropriate clades; bootstrap values greater than 50% are given on appropriate clades in the maximum likelihood analysis. Sequences newly obtained in this study are in bold. Scale bar = expected changes per site.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.