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Text-fig. 11. Paramblypterus cf. rohani. Arrows indicate directio cranialis. Scale bars 5 mm. a: isolated maxilla, cleithrum and supracleithrum in lateral view, locality Otovice "Chmelnice", P 64661; b: left posttemporal in dorsal view, locality Otovice "Chmelnice", P 64664; c: right operculum in lateral view, locality Otovice "Chmelnice", P 64883; d: anal fin, locality Otovice "Stěnava", DP 4529; e: dorsal fin, locality Otovice "Chmelnice", NM-M 4916. Abbreviations: Cl – cleithrum, Mx – maxilla, Scl – supracleithrum. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)
Text-fig. 11. Paramblypterus cf. rohani. Arrows indicate directio cranialis. Scale bars 5 mm. a: isolated maxilla, cleithrum and supracleithrum in lateral view, locality Otovice "Chmelnice", P 64661; b: left posttemporal in dorsal view, locality Otovice "Chmelnice", P 64664; c: right operculum in lateral view, locality Otovice "Chmelnice", P 64883; d: anal fin, locality Otovice "Stěnava", DP 4529; e: dorsal fin, locality Otovice "Chmelnice", NM-M 4916. Abbreviations: Cl – cleithrum, Mx – maxilla, Scl – supracleithrum.
Text-fig. 5. Paramblypterus vratislaviensis (AGASSIZ, 1833). Scale bars 5 mm. a: drawing of the skull roof in dorsal view, locality Olivětín, NM-M 2213; b, c: photograph and drawing of the left maxila in lateral view, locality Ruprechtice, NM-M 64696; d: right parietal in dorsal view, locality Ruprechtice "Pod Světlinou", P 64741; e: left maxilla in lateral view, locality Ruprechtice "Pod Světlinou", P 64738; f, g: photograph and drawing of the left mandible in medial view, locality Ruprechtice "Pod Světlinou", P 64738. Abbreviations: ap – anterior pit line, Dpt – dermopterotic, Dsph – dermosphenotic, eo – edge overlapped by surrounding bones, Fr – frontal, mp – medial pit line, Na – nasal, Pa – parietal, pp – posterior pit line, Ptr – postrostral, soc – supraorbital canal, socp – pores of the supraorbital canal. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)
Text-fig. 5. Paramblypterus vratislaviensis (AGASSIZ, 1833). Scale bars 5 mm. a: drawing of the skull roof in dorsal view, locality Olivětín, NM-M 2213; b, c: photograph and drawing of the left maxila in lateral view, locality Ruprechtice, NM-M 64696; d: right parietal in dorsal view, locality Ruprechtice "Pod Světlinou", P 64741; e: left maxilla in lateral view, locality Ruprechtice "Pod Světlinou", P 64738; f, g: photograph and drawing of the left mandible in medial view, locality Ruprechtice "Pod Světlinou", P 64738. Abbreviations: ap – anterior pit line, Dpt – dermopterotic, Dsph – dermosphenotic, eo – edge overlapped by surrounding bones, Fr – frontal, mp – medial pit line, Na – nasal, Pa – parietal, pp – posterior pit line, Ptr – postrostral, soc – supraorbital canal, socp – pores of the supraorbital canal.
Text-fig. 10. Paramblypterus cf. rohani. a: the skull roof in dorsal view, locality Otovice "Chmelnice", P 64665, scale bar 5 mm; b: bones of the skull roof in dorsal view, locality Otovice "Chmelnice", NM-M 4920, scale bar 5 mm; c: right frontal in dorsal view, locality Otovice "Chmelnice", NM-M 4923, scale bar 5 mm; d: right dermopterotic in dorsal view, locality Otovice "Chmelnice", P 30943, scale bar 2 mm; e: right supracleithrum in lateral view, locality Otovice "Chmelnice", P 30944, scale bar 5 mm; f: fragment of not deformed body in lateral view, locality Otovice "Chmelnice", NM-M 4916, scale bar 10 mm; g: right maxilla in lateral view, locality Otovice "Chmelnice", P 64661, scale bar 5 mm; h: right maxilla in lateral view, locality Otovice "Chmelnice", NM-M 4922, scale bar 5 mm. Abbreviations: Dpt – dermopterotic, Dsph – dermosphenotic, Fr – frontal, Pa – parietal. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)
Text-fig. 10. Paramblypterus cf. rohani. a: the skull roof in dorsal view, locality Otovice "Chmelnice", P 64665, scale bar 5 mm; b: bones of the skull roof in dorsal view, locality Otovice "Chmelnice", NM-M 4920, scale bar 5 mm; c: right frontal in dorsal view, locality Otovice "Chmelnice", NM-M 4923, scale bar 5 mm; d: right dermopterotic in dorsal view, locality Otovice "Chmelnice", P 30943, scale bar 2 mm; e: right supracleithrum in lateral view, locality Otovice "Chmelnice", P 30944, scale bar 5 mm; f: fragment of not deformed body in lateral view, locality Otovice "Chmelnice", NM-M 4916, scale bar 10 mm; g: right maxilla in lateral view, locality Otovice "Chmelnice", P 64661, scale bar 5 mm; h: right maxilla in lateral view, locality Otovice "Chmelnice", NM-M 4922, scale bar 5 mm. Abbreviations: Dpt – dermopterotic, Dsph – dermosphenotic, Fr – frontal, Pa – parietal.
Text-fig. 17. Aeduellidae. Scale bars 5 mm. a: the scales of oblong shape on the lateral side of the body, locality Otovice "Stěnava", DP 4307, whitened; b: drawing of the scales with fine denticles on their posterior edge, locality Otovice "Stěnava", DP 4307; c, d: drawing and photograph (whitened) of the scales of lateral side of the body, two times large scales occur in the rows 14, 16, 17, 19 (they are marked with arrows), locality Otovice "Černý potok", NM-M 4912; e: lepidotrichia of the anal fin with sigmoidal sutures between the segments (marked by arrows), locality Otovice, NM-M 4931, whitened; f: anterior edge of the dorsal fin and lepidotrichia with sigmoidal sutures between the segments, locality Otovice "Stěnava", DP 4307, whitened; g: anterior edge of the ventral lobe of the caudal fin, locality Otovice, NM-M 4931, whitened; h: the caudal peduncle with begin of bifurcation of the dorsal and ventral lobes of the caudal fin, locality Otovice, NM-M 4931. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)
Text-fig. 17. Aeduellidae. Scale bars 5 mm. a: the scales of oblong shape on the lateral side of the body, locality Otovice "Stěnava", DP 4307, whitened; b: drawing of the scales with fine denticles on their posterior edge, locality Otovice "Stěnava", DP 4307; c, d: drawing and photograph (whitened) of the scales of lateral side of the body, two times large scales occur in the rows 14, 16, 17, 19 (they are marked with arrows), locality Otovice "Černý potok", NM-M 4912; e: lepidotrichia of the anal fin with sigmoidal sutures between the segments (marked by arrows), locality Otovice, NM-M 4931, whitened; f: anterior edge of the dorsal fin and lepidotrichia with sigmoidal sutures between the segments, locality Otovice "Stěnava", DP 4307, whitened; g: anterior edge of the ventral lobe of the caudal fin, locality Otovice, NM-M 4931, whitened; h: the caudal peduncle with begin of bifurcation of the dorsal and ventral lobes of the caudal fin, locality Otovice, NM-M 4931.
Text-fig. 15. Aeduellidae. Scale bars 5 mm. a: isolated left maxilla in lateral view, locality Otovice "Chmelnice", P 64678; b: the skull in lateral view, locality Otovice "Stěnava", G 58; c, d: drawing and photograph of the skull roof in dorsal view, locality Otovice, NM-M 4910. Abbreviations: Dpt – dermopterotic, Dsph – dermosphenotic, Ext – extrascapular, Fr – frontal, Io – infraorbital, ioc – infraorbital canal, Md – mandible, mp – medial pit line, Mx – maxilla, Na – nasal, Op – operculum, Pa – parietal, pp – posterior pit line, soc – supraorbital canal, stc – supratemporal canal. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)
Text-fig. 15. Aeduellidae. Scale bars 5 mm. a: isolated left maxilla in lateral view, locality Otovice "Chmelnice", P 64678; b: the skull in lateral view, locality Otovice "Stěnava", G 58; c, d: drawing and photograph of the skull roof in dorsal view, locality Otovice, NM-M 4910. Abbreviations: Dpt – dermopterotic, Dsph – dermosphenotic, Ext – extrascapular, Fr – frontal, Io – infraorbital, ioc – infraorbital canal, Md – mandible, mp – medial pit line, Mx – maxilla, Na – nasal, Op – operculum, Pa – parietal, pp – posterior pit line, soc – supraorbital canal, stc – supratemporal canal.
Text-fig. 14. Aeduellidae. a: specimen DP 4307, locality Otovice "Stěnava", scale bar 10 mm; b: specimen NM-M 4931, locality Otovice, scale bar 10 mm. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)
Text-fig. 14. Aeduellidae. a: specimen DP 4307, locality Otovice "Stěnava", scale bar 10 mm; b: specimen NM-M 4931, locality Otovice, scale bar 10 mm.
Text-fig. 5. Megamphicyon carnutense (ANTUNES et GINSBURG, 1977), from Tuchořice, the Czech Republic, upper teeth. a: NM-Pv 11701, right P4, a1 – buccal view, a2 – lingual view, a3 – occlusal view; b: NM-Pv 11704, left M1, b1 – occlusal view, b2 – mesial view; c: NM-Pv 11705, left M2 in occlusal view; d: NM-Pv 11706, left M3 in occlusal view; e: NM-Pv 11707, left M3 in occlusal view. in The Amphicyoninae (Amphicyonidae, Carnivora, Mammalia) Of The Early Miocene From Tuchořice, The Czech Republic
Text-fig. 5. Megamphicyon carnutense (ANTUNES et GINSBURG, 1977), from Tuchořice, the Czech Republic, upper teeth. a: NM-Pv 11701, right P4, a1 – buccal view, a2 – lingual view, a3 – occlusal view; b: NM-Pv 11704, left M1, b1 – occlusal view, b2 – mesial view; c: NM-Pv 11705, left M2 in occlusal view; d: NM-Pv 11706, left M3 in occlusal view; e: NM-Pv 11707, left M3 in occlusal view.
Text-fig. 4. Paludocyon bohemicus (SCHLOSSER, 1899), from Tuchořice, the Czech Republic, lower teeth. a: NM-Pv 11677, left m1 (lectotype), a1 – buccal view, a2 – lingual view, a3 – occlusal view; b: NM-Pv 11700, left mandible with c, alveoli for p1–p2, and p3–m2, b1 – occlusal view, b2 – lingual view, b3 – buccal view; c: NM-Pv 11695, right mandible with p2–m2, c1 – lingual view, c2 – buccal view, c3 – occlusal view; d: NM-Pv 11698, right p4–m2, d1 – lingual view, d2 – occlusal view, d3 – buccal view; e: NM-Pv 11697, right p3–m3, e1 – occlusal view, e2 – lingual view; f: NM-Pv 11699, left mandible with p3–m3, f1 – lingual view, f2 – occlusal view, f3 – buccal view; g: NM-Pv 11722, left p4–m3, g1 – buccal view, g2 – lingual view, g3 – occlusal view. in The Amphicyoninae (Amphicyonidae, Carnivora, Mammalia) Of The Early Miocene From Tuchořice, The Czech Republic
Text-fig. 4. Paludocyon bohemicus (SCHLOSSER, 1899), from Tuchořice, the Czech Republic, lower teeth. a: NM-Pv 11677, left m1 (lectotype), a1 – buccal view, a2 – lingual view, a3 – occlusal view; b: NM-Pv 11700, left mandible with c, alveoli for p1–p2, and p3–m2, b1 – occlusal view, b2 – lingual view, b3 – buccal view; c: NM-Pv 11695, right mandible with p2–m2, c1 – lingual view, c2 – buccal view, c3 – occlusal view; d: NM-Pv 11698, right p4–m2, d1 – lingual view, d2 – occlusal view, d3 – buccal view; e: NM-Pv 11697, right p3–m3, e1 – occlusal view, e2 – lingual view; f: NM-Pv 11699, left mandible with p3–m3, f1 – lingual view, f2 – occlusal view, f3 – buccal view; g: NM-Pv 11722, left p4–m3, g1 – buccal view, g2 – lingual view, g3 – occlusal view.
Text-fig. 9. Dehmicyon aff. schlosseri (DEHM, 1950), from Tuchořice, the Czech Republic. a: NM-Pv 11675, right M1, a1 – buccal view, a2 – mesial view, a3 – distal view, a4 – occlusal view; b: NM-Pv 11676, right M2 in occlusal view. in The Amphicyoninae (Amphicyonidae, Carnivora, Mammalia) Of The Early Miocene From Tuchořice, The Czech Republic
Text-fig. 9. Dehmicyon aff. schlosseri (DEHM, 1950), from Tuchořice, the Czech Republic. a: NM-Pv 11675, right M1, a1 – buccal view, a2 – mesial view, a3 – distal view, a4 – occlusal view; b: NM-Pv 11676, right M2 in occlusal view.
Text-fig. 3. Paludocyon bohemicus (SCHLOSSER, 1899), from Tuchořice, the Czech Republic, upper teeth. a: NM-Pv 11678, left P4 (paralectotype), a1 – occlusal view, a2 – buccal view, a3 – lingual view, a4 – mesial view; b: NM-Pv 11681, left P4, b1 – occlusal view, b2 – buccal view, b3 – lingual view; c: NM-Pv 11684, left P4, c1 – occlusal view, c2 – buccal view, c3 – lingual view; d: NMPv 11685, right M1, d1 – occlusal view, d2 – buccal view; e: NM-Pv 11686, left M1; e1 – occlusal view, e2 – buccal view, e3 – distal view; f: NM-Pv 11687, right M2 in occlusal view; g: NM-Pv 11688, left M2, g1 – buccal view, g2 – occlusal view; h: NM-Pv 11689, right M2 in occlusal view; i: NM-Pv 11690, left M2, i1 – buccal view, i2 – occlusal view; j: NM-Pv 11692, left M3 in occlusal view; k: NM-Pv 11691, right M3 in occlusal view. in The Amphicyoninae (Amphicyonidae, Carnivora, Mammalia) Of The Early Miocene From Tuchořice, The Czech Republic
Text-fig. 3. Paludocyon bohemicus (SCHLOSSER, 1899), from Tuchořice, the Czech Republic, upper teeth. a: NM-Pv 11678, left P4 (paralectotype), a1 – occlusal view, a2 – buccal view, a3 – lingual view, a4 – mesial view; b: NM-Pv 11681, left P4, b1 – occlusal view, b2 – buccal view, b3 – lingual view; c: NM-Pv 11684, left P4, c1 – occlusal view, c2 – buccal view, c3 – lingual view; d: NMPv 11685, right M1, d1 – occlusal view, d2 – buccal view; e: NM-Pv 11686, left M1; e1 – occlusal view, e2 – buccal view, e3 – distal view; f: NM-Pv 11687, right M2 in occlusal view; g: NM-Pv 11688, left M2, g1 – buccal view, g2 – occlusal view; h: NM-Pv 11689, right M2 in occlusal view; i: NM-Pv 11690, left M2, i1 – buccal view, i2 – occlusal view; j: NM-Pv 11692, left M3 in occlusal view; k: NM-Pv 11691, right M3 in occlusal view.
Text-fig. 6. Megamphicyon carnutense (ANTUNES et GINSBURG, 1977), from Tuchořice, the Czech Republic, lower teeth. a: NMPv 11708, left p4, a1 – occlusal view, a2 – buccal view, a3 – lingual view; b: NM-Pv 11709, left p4, b1 – occlusal view, b2 – buccal view, b3 – lingual view; c: NM-Pv 11710, left m1, c1 – lingual view, c2 – occlusal view, c3 – buccal view; d: NM-Pv 11711, left m1, d1 – lingual view, d2 – occlusal view, d3 – buccal view; e: NM-Pv 11747, left m1–m3, e1 – occlusal view, e2 – lingual view, e3 – buccal view; f: NM-Pv 11713, left m2, f1 – lingual view, f2 – occlusal view, f3 – buccal view; g: NM-Pv 11714, left m2, g1 – lingual view, g2 – occlusal view, g3 – buccal view; h: NM-Pv 11718, right m2, h1 – lingual view, h2 – occlusal view, h3 – buccal view, h4 – distal view; i: NM-Pv 11716, left m2 in occlusal view; j: NM-Pv 11717, left m2, j1 – occlusal view, j2 – buccal view; k: NMPv 11696, right m2–m3, k1 – lingual view, k2 – buccal view, k3 – occlusal view. in The Amphicyoninae (Amphicyonidae, Carnivora, Mammalia) Of The Early Miocene From Tuchořice, The Czech Republic
Text-fig. 6. Megamphicyon carnutense (ANTUNES et GINSBURG, 1977), from Tuchořice, the Czech Republic, lower teeth. a: NMPv 11708, left p4, a1 – occlusal view, a2 – buccal view, a3 – lingual view; b: NM-Pv 11709, left p4, b1 – occlusal view, b2 – buccal view, b3 – lingual view; c: NM-Pv 11710, left m1, c1 – lingual view, c2 – occlusal view, c3 – buccal view; d: NM-Pv 11711, left m1, d1 – lingual view, d2 – occlusal view, d3 – buccal view; e: NM-Pv 11747, left m1–m3, e1 – occlusal view, e2 – lingual view, e3 – buccal view; f: NM-Pv 11713, left m2, f1 – lingual view, f2 – occlusal view, f3 – buccal view; g: NM-Pv 11714, left m2, g1 – lingual view, g2 – occlusal view, g3 – buccal view; h: NM-Pv 11718, right m2, h1 – lingual view, h2 – occlusal view, h3 – buccal view, h4 – distal view; i: NM-Pv 11716, left m2 in occlusal view; j: NM-Pv 11717, left m2, j1 – occlusal view, j2 – buccal view; k: NMPv 11696, right m2–m3, k1 – lingual view, k2 – buccal view, k3 – occlusal view.
FDTD simulation of 230 nm thickness PAAO with Au NPs in different mediums (AoI 60 deg., s- and p-polarizations)
<p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 230 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>RNP</em>) gold (Johnson and Christy) nanoparticles (Au NPs) placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; 60° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s- and p-polarizations (<em>pol</em>).</p> <p>Monitors (frequency domain field and power): (1) 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files. (2) 2D Y-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files. (3) 2D X-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>RNP</em> - diameter of gold nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project; it can be used to extract data from Y- and X-normal monitors (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "<em>h230.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
FDTD simulation of 350 nm thickness PAAO with Au NPs in different mediums (AoI 60 deg., s- and p-polarizations)
<p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 350 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>RNP</em>) gold (Johnson and Christy) nanoparticles (Au NPs) placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; 60° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s- and p-polarizations (<em>pol</em>).</p> <p>Monitors (frequency domain field and power): (1) 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files. (2) 2D Y-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files. (3) 2D X-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>RNP</em> - diameter of gold nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project; it can be used to extract data from Y- and X-normal monitors (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "<em>h350.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
FDTD simulation of 320 nm thickness PAAO with Au NPs in different mediums (AoI 60 deg., s- and p-polarizations)
<p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 320 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>RNP</em>) gold (Johnson and Christy) nanoparticles (Au NPs) placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; 60° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s- and p-polarizations (<em>pol</em>).</p> <p>Monitors (frequency domain field and power): (1) 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files. (2) 2D Y-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files. (3) 2D X-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>RNP</em> - diameter of gold nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project; it can be used to extract data from Y- and X-normal monitors (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "<em>h320.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
FDTD simulation of 290 nm PAAO with gold nanoparticles: varying incidence angle, s-polarization, n=1
<p>Version 2 has the same files as version 1 and some additional files.</p> <p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 290 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>RNP</em>) gold (Johnson and Christy) nanoparticles placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; varying (20° - 70° in steps of 5°) angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s-polarization (<em>pol</em>).</p> <p>Monitor (frequency domain field and power): 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>RNP</em> - diameter of gold nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project (license required to open these files). Consecutive numbering corresponds to the angles of incidence: 1 - 20°, 2 - 25°, 3 - 30°, 4 - 35°, 5 - 40°, 6 - 45°, 7 - 50°, 8 - 55°, 9 - 60°, 10 - 65°, 11 - 70°. (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "290nm-Spol_varying-angle<em>.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
FDTD simulation of 290 nm PAAO with gold nanoparticles: varying refractive index of surrounding medium, s-polarization
<p>Version 2 has the same files as version 1 and some additional files.</p> <p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 290 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>RNP</em>) gold (Johnson and Christy) nanoparticles placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1; 1.2; 1.3.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; 45° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s-polarization (<em>pol</em>).</p> <p>Monitor (frequency domain field and power): 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>RNP/AuRNP</em> - diameter of gold nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project; it can be used to extract data from Y- and X-normal monitors (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "<em>h290,varN.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
FDTD simulation of 350 nm thickness PAAO with Ag NPs in different mediums (AoI 45 deg., s- and p-polarizations)
<p>Version 2 has the same files as version 1 plus images representing data.</p> <p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 350 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>AgRNP</em>) silver (Palik) nanoparticles (Ag NPs) placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1; 1.2; 1.3.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; 45° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s- and p-polarizations (<em>pol</em>).</p> <p>Monitors (frequency domain field and power): (1) 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files. (2) 2D Y-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files. (3) 2D X-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>AgRNP</em> - diameter of silver nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project; it can be used to extract data from Y- and X-normal monitors (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "<em>h350_Spol.jpg</em>" and "<em>h350_Ppol.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
FDTD simulation of 230 nm thickness PAAO with Ag NPs in different mediums (AoI 45 deg., s- and p-polarizations)
<p>Version 2 has the same files as version 1 plus images representing data.</p> <p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 230 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>AgRNP</em>) silver (Palik) nanoparticles (Ag NPs) placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1; 1.2; 1.3.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; 45° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s- and p-polarizations (<em>pol</em>).</p> <p>Monitors (frequency domain field and power): (1) 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files. (2) 2D Y-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files. (3) 2D X-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>AgRNP</em> - diameter of silver nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project; it can be used to extract data from Y- and X-normal monitors (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "<em>h230_Spol.jpg</em>" and "<em>h230_Ppol.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
FDTD simulation of 320 nm thickness PAAO with Ag NPs in different mediums (AoI 45 deg., s- and p-polarizations)
<p>Version 2 has the same files as version 1 plus images representing data.</p> <p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 320 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>AgRNP</em>) silver (Palik) nanoparticles (Ag NPs) placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1; 1.2; 1.3.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; 45° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s- and p-polarizations (<em>pol</em>).</p> <p>Monitors (frequency domain field and power): (1) 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files. (2) 2D Y-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files. (3) 2D X-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>AgRNP</em> - diameter of silver nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project; it can be used to extract data from Y- and X-normal monitors (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "<em>h320_Spol.jpg</em>" and "<em>h320_Ppol.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
FDTD simulation of 290 nm thickness PAAO with Ag NPs in different mediums (AoI 45 deg., s- and p-polarizations)
<p>Version 2 has the same files as version 1 plus images representing data.</p> <p>FDTD software: Lumerical (Ansys, version 2021 R2.3).</p> <p>Structure: aluminum (Palik) substrate; 290 nm thickness (<em>h</em>) aluminum oxide (Palik) layer with 35 nm diameter (<em>RPo</em>) cylindrical pores with 100 nm distance (<em>D</em>) between the pore centers (representing porous anodized aluminum oxide - PAAO); 60 nm diameter (<em>AgRNP</em>) silver (Palik) nanoparticles (Ag NPs) placed directly above each pore.</p> <p>Refractive index of the surrounding medium (<em>n</em>): 1.0; 1.1; 1.2; 1.3.</p> <p>Simulation region: from 300 nm below the substrate/PAAO interface to 1.3 µm above PAAO surface; x and y spans are equal to one period of the structure.</p> <p>Mesh override region: from 50 nm below the PAAO to 50 nm above the nanoparticles; 2 nm step size in each direction.</p> <p>Light source: BFAST plane wave light source; 500 nm above PAAO; 45° angle of incidence (<em>ang</em>); 300 nm – 1000 nm wavelength range; s- and p-polarizations (<em>pol</em>).</p> <p>Monitors (frequency domain field and power): (1) 2D Z-normal; 1 µm above PAAO; results are in "<em>_reflection.txt</em>" files. (2) 2D Y-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files. (3) 2D X-normal; centered to the structure; starts 50 nm below PAAO and ends 50 nm above nanoparticles; results are in "<em>.fsp</em>" files.</p> <p>Information in the file name: <em>h</em> - thickness of PAAO; <em>pol</em> - polarization; <em>AgRNP</em> - diameter of silver nanoparticles; <em>RPo</em> - diameter of pores; <em>D</em> - distance between pore centers; <em>ang</em> - angle of incidence; <em>n</em> - refractive index of surrounding medium.</p> <p>Files: (1) "<em>_reflection.txt</em>" - lambda(nm) (first column) - wavelength in nanometers; Y (second column) - T data from the monitor above the structure. (2) "<em>_p0.log</em>" - log file produced by the software while running the simulation. (3) "<em>.fsp</em>" - Lumerical software file containing the simulation project; it can be used to extract data from Y- and X-normal monitors (license required to open these files). (4) "<em>Lumerical_Screenshots.pdf</em>" - shows software screenshots for every object and its every property; red text is added to show which values are different for different simulations. (5) "<em>Structure_Illustration.png</em>" - a schematic of modeled structure. (6) "<em>h290_Spol.jpg</em>" and "<em>h290_Ppol.jpg</em>" - a preview of data from "<em>_reflection.txt</em>" files.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.