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1,023
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ShareScore release 0.9.0
Dataset results
1,023 results for “copy number”
Oncoscan for HER2 copy number assessment
GEO Series GSE83916. Homo sapiens. 29 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Genome-wide copy number variation in TP53 mutation negative ovarian tumours
GEO Series GSE19416. Homo sapiens. 7 samples. Type: Genome variation profiling by SNP array.
Genome-wide analyses of DNA Copy Number and somatic mutations of high hyperdiploid acute lymphoblastic leukemia
<p>This is a data record for copy number analysis and somatic single nucleotide variants analysis of high hyperdiploid acute lymphoblastic leukemia (ALL) in the manuscript: Clonal origin and development of high hyperdiploidy in childhood acute lymphoblastic leukemia.</p> <p>mutations.zip included 22 samples with high hyperdiploid ALL collected from the Division of Clinical Genetics, Lund University, Sweden. All samples were subjected to whole genome sequencing and somatic variants were identified by the GDC DNA-Seq analysis pipeline (Zhang et al.,2021). The data was stored in variant call format (vcf) and the interpretation of the file is available at: https://docs.gdc.cancer.gov/Data/File_Formats/VCF_Format/.</p> <p>TAPS.zip included 577 samples with high hyperdiploid ALL that were collected from four different cohorts. All samples were genotyped using either the Affymetrix SNP Array, Illumina's BeadArray platform or the whole genome/exome sequencing. Copy number alterations analysis was performed using TAPS and the graphics produced by TAPS are available for download. The interpretation of the figure is available at: https://patchwork.r-forge.r-project.org. This dataset has been used for copy number aberrations analysis for high hyperdiploid ALL.</p> <p> </p>
Human lung adenocarcinoma DNA copy number profiling
GEO Series GSE36363. Homo sapiens. 133 samples. Type: Genome variation profiling by SNP array.
Naturally occurring copy-number polymorphism in Drosophila melanogaster
GEO Series GSE9639. Drosophila melanogaster. 26 samples. Type: Genome variation profiling by array.
De novo copy number variations in cloned dogs (Nimblegen)
GEO Series GSE49092. Canis lupus familiaris. 9 samples. Type: Genome variation profiling by genome tiling array.
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (GenomeWideSNP_6)
GEO Series GSE28111. Homo sapiens. 36 samples. Type: Genome variation profiling by SNP array.
A novel t(X;21) (p11.4;q22.12) translocation adds to the role of BCOR and RUNX1 in Myelodysplastic Syndromes/Acute Myeloid Leukemias [Copy number analysis]
GEO Series GSE243055. Homo sapiens. 4 samples. Type: Genome variation profiling by SNP array.
DNA copy number analysis from mice with radiation-induced acute myeloid leukemia
GEO Series GSE37233. Mus musculus. 19 samples. Type: Genome variation profiling by genome tiling array.
Affymetrix OncoScan SNP arrays for profiling copy-number alterations (CNAs) and loss-of-heterozygosity (LOH) in colon cancer
GEO Series GSE171777. Homo sapiens. 84 samples. Type: Genome variation profiling by SNP array.
High-resolution genome-wide copy number analysis of pre-invasive mucinous ovarian tumours
GEO Series GSE39076. Homo sapiens. 120 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Gene Expression Time Courses of CH999 with High or Low Copy Number Plasmids
GEO Series GSE6096. Streptomyces coelicolor. 12 samples. Type: Expression profiling by array.
DNA copy number changes in colorectal flat adenomas
GEO Series GSE30479. Homo sapiens. 118 samples. Type: Genome variation profiling by array.
Distribution, functional impact and origin mechanisms of copy number variation in the barley genome
GEO Series GSE44293. Hordeum vulgare subsp. vulgare. 19 samples. Type: Genome variation profiling by genome tiling array.
A Snapshot of Copy Number Variation in the pig genome
GEO Series GSE10753. Sus scrofa. 24 samples. Type: Genome variation profiling by genome tiling array.
Integrative analysis of DNA copy number, DNA methylation and gene expression in multiple myeloma reveals alterations related to relapse
GEO Series GSE77540. Homo sapiens. 112 samples. Type: Genome variation profiling by SNP array; Methylation profiling by genome tiling array; Expression profiling by array.
Mesothelioma cell lines SNP data copy number analysis
GEO Series GSE29383. Homo sapiens. 25 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Phenotypically concordant and discordant monozygotic twins display different DNA copy number variation profiles (SNP)
GEO Series GSE9608. Homo sapiens. 26 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Copy number variation in the genomes of Caenorhabditis elegans end-to-end fusion strains
GEO Series GSE26691. Caenorhabditis elegans. 47 samples. Type: Genome variation profiling by genome tiling array.
Measuring DNA replication timing of maize root tips using DNA copy number (S/G1) method
GEO Series GSE287085. Zea mays. 12 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.