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FIGURE 7 in Three interesting fungal species associated with the Asian House Gecko in Kunming, China
FIGURE 7. Colletotrichum jiangxiense (KUMCC 21-0466). a, b Colonies on PDA. c Hyphae. d Hyphae stained by cotton blue reagent. e, f Conidophores connected with conidia (f: stained by congo red reagent). g–i Conidia (g: stained by cotton blue reagent). Scale bars: c, d = 20 μm, e–i = 10 μm.
FIGURE 6 in Three interesting fungal species associated with the Asian House Gecko in Kunming, China
FIGURE 6. Phylogram generated from maximum likelihood analysis based on a combined ITS, HIS, CAL, ACT, tub2 and GPDH sequence datasets. Related sequences were taken from Diao et al. (2017) and Chaiwan et al. (2021). The 52 strains are included in the combined gene analyses, 2882 total characters including gaps (ITS: 1–579 bp, HIS: 580–874 bp, CAL: 875–1610 bp, ACT: 1611–1888 bp, tub2: 1889–2602 bp, GPDH: 2603–2882). Tree topology of the ML analysis was similar to the BI. The matrix had distinct alignment patterns, with the final ML optimization likelihood value of -14018.222367 (ln). All free model parameters were estimated using the RAxML model, with 1867 distinct alignment patterns and 15.05% of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.227166, C = 0.283924, G = 0.257262, T = 0.216566, with substitution rates AC = 1.035930, AG = 0.298823, AT = 0.248992, CG = 0.225019, CT = 4.115498, GT = 1.000000. The gamma distribution shape parameter alpha = 0.904631 and the Tree-Length = 0.821909. The final average standard deviation of split frequencies at the end of total MCMC generations calculated as 0.009613 in BI analysis. The species determined in this study are indicated in red. Bootstrap values equal to or greater than 70% (ML, left) and Bayesian posterior probabilities (BI, right) equal to or greater than 0.95 are given at the nodes. Hyphens (-) represent support values less than 70% in ML/0.95 in BI.
FIGURE 5 in Three interesting fungal species associated with the Asian House Gecko in Kunming, China
FIGURE 5. Beauveria bassiana (KUMCC 21-0468). a Appearance of fungal colonies on PDA. b Close-up of fungal colonies. c Mycelium with conidia. d Mycelium mass stained by cotton blue reagent. e Conidia connected with conidiogenous cells and stained by cotton blue reagent. f A conidophore. g A branched mycelium stained by congo red reagent. h Minus and plus mycelium stained by congo red reagent. i Conidia stained by congo red reagent. j Conidia stained by cotton blue reagent. Scale bars: d = 50 μm, c, e = 30 μm, g, h = 10 μm, f, i, j = 5 μm.
FIGURE 4 in Three interesting fungal species associated with the Asian House Gecko in Kunming, China
FIGURE 4. Phylogram generated from maximum likelihood analysis based on a combined ITS, rpb1, rpb2, tef1-α and Bloc sequence datasets. Related sequences were taken from Chen et al. (2018) and Khonsanit et al. (2020). A total of 81 strains are included in the combined gene analyses; 5090 total characters including gaps (ITS: 1–566 bp, rpb1: 567–1307 bp, rpb2: 1308–2430 bp, tef1-α: 2431–3429 bp, Bloc: 3430-5090 bp). Tree topology of the ML analysis was similar to the BI. The matrix had distinct alignment patterns, with the final ML optimization likelihood value of -29154.321884 (ln). All free model parameters were estimated using the RAxML model, with 1867 distinct alignment patterns and 15.05% of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.242248, C = 0.283924, G = 0.257262, T = 0.216566, with substitution rates AC = 0.928484, AG = 3.845624, AT = 0.649405, CG = 0.874887, CT = 4.792288, GT = 1.000000. The gamma distribution shape parameter alpha = 0.712530 and the Tree-Length = 1.618181. The final average standard deviation of split frequencies at the end of total MCMC generations calculated as 0.009746 in BI analysis. The species determined in this study are indicated in red. Bootstrap values equal to or greater than 70% (ML, left) and Bayesian posterior probabilities (BI, right) equal to or greater than 0.95 are given at the nodes. Hyphens (-) represent support values less than 70% in ML/0.95 in BI.
FIGURE 3 in Three interesting fungal species associated with the Asian House Gecko in Kunming, China
FIGURE 3. Basidiobolus ranarnm (KUMCC 21-0467). a–c Appearance of colonies on PDA. d–e The branched hypha with zygospores stained by cotton blue reagent. f–g Zygospore with characteristic beak stained by cotton blue reagent. h Thick-walled zygospores stained by cotton blue reagent. i–k Producing meristospores stained by cotton blue reagent. Scale bars: d, e = 50 μm, f, g = 30 μm, h–k = 20 μm.
FIGURE 1. a in Three interesting fungal species associated with the Asian House Gecko in Kunming, China
FIGURE 1. a The dead Asian House Gecko specimen, with infected areas on the forehead F-5, neck F-1, and inflamed right forelimb F-4 indicated. b, c Fungal mycelium infecting gecko's skin. d, e Inflamed right forelimb.
FIGURE 2 in Three interesting fungal species associated with the Asian House Gecko in Kunming, China
FIGURE 2. Phylogram generated from maximum likelihood analysis based on a combined LSU, ITS, rpb2 and mtSSU sequence datasets. Related sequences were taken from Gryganskyi et al. (2013), Nie et al. (2020) and Al-Hatmi et al. (2021). The 14 strains are included in the combined gene analyses; 3258 total characters including gaps (LSU: 1–1021 bp, ITS: 1022–1745 bp, rpb2: 1746–2590 bp, mtSSU: 2591–3258 bp). Tree topology of the ML analysis was similar to the BI. The matrix had distinct alignment patterns, with the final ML optimization likelihood value of -10673.579273 (ln). All free model parameters were estimated using the RAxML model, with 586 distinct alignment patterns and 21.73% undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.280858, C = 0.195362, G = 0.257773, T = 0.266007, with substitution rates AC = 1.709550, AG = 4.063199, AT = 2.099405, CG = 1.130856, CT = 8.827188, GT = 1.000000. The gamma distribution shape parameter alpha = 0.109274 and the Tree-Length = 4.770478. The final average standard deviation of split frequencies at the end of total MCMC generations were calculated as 0.009712 in BI analysis. The species determined in this study are indicated in red. Bootstrap values equal to or greater than 70% (ML, left) and Bayesian posterior probabilities (BI, right) equal to or greater than 0.90 are given at the nodes. Hyphens (-) represent support values less than 70% in ML/0.90 in BI.
FIGURE 12 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 12. Ancylodactylus spawlsi sp. nov. A) Holotype NMK-L3470 in life. B) Male (NMK-L1237, non-type) on tree in Ngaya Forest. C–D) Dorsum and venter, respectively of male specimen (NMK-L221L/1, non-type) from Kijege Hill. E–F) Dorsum and venter, respectively of female paratype (NMK-L4007/1) from Kirimiri Forest. Photo A © Stephen Spawls, photos B–F © Patrick K. Malonza.
FIGURE 11 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 11. Ancylodactylus spawlsi sp. nov. A) Dorsal view of holotype, NMK-L3470. Scale bar = 10 mm. B) Precloacal region of holotype showing series of 6 precloacal pores. C) Ventral view of right hind foot of paratype, NMK-L4007/1. D) Dorsum of tail of holotype illustrating rows of tubercles near the posterior margins of each tail segment.
FIGURE 9 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 9. Preserved specimens of Ancylodactylus laikipiensis sp. nov. A) Dorsal view of holotype, NMK-L3214/1. Scale bar = 10 mm. B) Trunk dorsum of holotype at midbody showing granular scalation. C) Ventral view of right hind foot of holotype. D) Precloacal region of adult male paratype, NMK-L1462/1, showing single series of 7 precloacal pores (arrows mark the lateralmost pores). E) Dorsal view of holotype tail showing atubercular scalation. F) Ventral surface of holotype tail showing single median row of enlarged, athough not particularly wide, subcaudal plates.
FIGURE 8 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 8. Ancylodactylus mathewsensis sp. nov.. A) Living holotype (NMK-L3375/1) and B) paratype (NMK-L3368/3) in dorsal views showing the typical fleurs-de-lis dorsal pattern typical of this and several other Kenyan Cnemaspis. C) Ventral view of male holotype showing the typical contrasting yellow trunk and limb venter and orange subcaudal surface. Note the transversely widened midventral subcaudal scales in a single row. Photos © P.K. Malonza.
FIGURE 7 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 7. Preserved specimen of holotype of Ancylodactylus mathewsensis sp. nov., NMK-L3375/1. A) Dorsal view of entire specimen. Scale bar = 10 mm. B) Trunk dorsum, showing heterogeneous granular scalation. C) Ventral view of right hind foot. D) Precloacal region showing a series of 7 precloacal pores (arrows mark the lateralmost pores). E) Dorsum of tail base showing rounded tubercles on pygal portion of tail only. Post-pygal (autotomic) portion of tail without tubercles.
FIGURE 6B in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 6B. Ancylodactylus africanus in life. A) Female (no voucher) in crevice of tree trunk, Namanga Hills. B) Ventral view of NMK-L4177/3 from Namanga Hill rock cave, with freshly autotomized tail and exhibiting typical ventral coloration. C) Specimen (no voucher) on rock surface, Mt. Kasigau, Taita Hills. Photos: A–B © P.K. Malonza, C: © Quentin Luke.
FIGURE 5 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 5. Ancylodactylus kituiensis sp. nov. A–B) Live adult male paratype NMK-L3559/1 inside rock cave at Nzambani Rock. C–D) Freshly dead male paratype NMK-L3775/1 from Mutomo Hill rock outcrops showing dorsal and ventral coloration, respectively. Photos A–B © P.K. Malonza, photos C–D © Domnick Victor Wasonga.
FIGURE 2 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 2. Ancylodactylus kenyaensis sp. nov. A) Dorsal view of holotype, NMK-220L/2. Scale bar = 10 mm. B) Dorsal view of holotype trunk at midbody. C) Precloacal region of holotype showing a series of 8 precloacal pores (arrows mark the lateralmost pores). D) Ventral view of right hind foot of paratype NMK-220L/1. E) Dorsum of tailbase of holotype.
FIGURE 13 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 13. Holotype of Ancylodactylus chyuluensis sp. nov., NMK-L3869. A) Dorsal view. B) Ventral view showing the bluish throat and extensive dark pigmentation on most of the ventral scales. C) Dorsal view of preserved specimen. Scale bar = 10 mm. D) Trunk dorsum at midbody showing mostly granular surface. E) Precloacal region showing single row of 8 pores (arrows mark the lateralmost pores). F) Tail dorsum showing atubercular surface. Photos A–B © P.K. Malonza.
FIGURE 10 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 10. Freshly dead Ancylodactylus laikipiensis sp. nov. showing A) dorsal and B) ventral coloration of holotype (NMK- L3214/1). Note uniformly yellow ventral surfaces. Mukutan Gorge area. Photos © Domnick Victor Wasonga.
FIGURE 6A in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 6A. Ancylodactylus africanus in life. A–B) Adult female, dorsum (NMK-L3622/3) and venter (NMK-L218L), respectively; Shimba Hills National Reserve. C) Male (NMK-L3924/L) on rock cave ceiling, Ngulia Hills. D) Ventral surface of specimen in image C. Photos: A–D © P.K. Malonza.
FIGURE 3 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 3. Ancylodactylus kenyaensis sp. nov., in life. A) Holotype (NMK-220L/2), adult male, dorsal view, note trombiculid mite infestation. B) Holotype venter showing lack of bright pigmentation. C) Adult female paratype (NMK-220L/1); D) Tree trunk microhabitat of A. kenyaensis in Chuka Forest, Meru South, Thiraka-Nithi County, Kenya.
FIGURE 1 in Resurrection of the African gecko genus Ancylodactylus Müller, 1907 (Squamata: Gekkonidae) and description of six new species from Kenya
FIGURE 1. Map of Kenya showing the known localities of the six newly described species of Ancylodactylus and the distribution of comparative Kenyan material of A. africanus and A. elgonensis. Stars indicate type localities. Cartography by Edward L. Stanley.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.