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4,356 results for “red”
Geographic variability of hybridization between red-breasted and red-naped sapsuckers
<p>Hybrid zones reveal the strength of reproductive isolation between populations undergoing speciation and are a key tool in evolutionary biology research. Multiple replicate transects across the same hybrid zone offer insight into the dynamics of hybridization in different environments, clarifying the role of extrinsic forces on the speciation process. Red-breasted and red-naped sapsuckers (<em>Sphyrapicus</em> <em>ruber</em> and <em>S</em>. <em>nuchalis</em>) have a long zone of contact over approximately 1,600 km from central British Columbia, Canada to central California, USA. We used Genotyping-by-Sequencing data from three independent sapsucker hybrid zone transects to compare hybridization dynamics between these species under variable geoclimatic conditions. We generated geographic clines of the genomic data to compare hybrid zone widths and used Random Forest models and linear regression to assess the relationship between climate and sapsucker ancestry along each transect. Our results show variation in the directionality of backcrossing, often indicative of moving hybrid zones. We note variable cline widths among transects, indicating differences in selection maintaining hybrid zone dynamics. Furthermore, Random Forest models identified different variables in close association with sapsucker ancestry across each transect. These results indicate a lack of repeatability across replicate transects and a strong influence of local environment on hybrid zone dynamics.</p>
Data for "Light Curves of Type IIP Supernovae from Neutrino-driven Explosions of Red Supergiants Obtained by a Semi-analytic Approach"
<p>Data in the form of Table 1 in the accompanying paper "Light Curves of Type IIP Supernovae from Neutrino-driven Explosions of Red Supergiants Obtained by a Semi-analytic Approach" at arXiv.org</p> <p>See the README file on the usage</p>
Combined fluorescence fluctuation and spectrofluorometric measure-ments reveal a red-shifted, near-IR emissive photo-isomerized form of Cyanine 5
<p><strong>This folder contains all raw data underlying the results presented in a manuscript, accepted for publication in International Journal of Molecular Sciences, and entitled:</strong></p> <p> </p> <p><strong>Combined fluorescence fluctuation and spectrofluorometric measurements reveal a red-shifted, near-IR emissive photo-isomerized form of Cyanine 5</strong></p> <p> </p> <p><strong>Authored by:</strong></p> <p>Elin Sandberg <sup>1</sup>, Joachim Piguet <sup>1</sup>, Haichun Liu <sup>1</sup> and Jerker Widengren <sup>1,</sup>*</p> <p> </p> <p><sup>1</sup> Experimental Biomolecular Physics, Department of Applied Physics, Royal Institute of Technology (KTH), Stockholm, Sweden</p> <p><sup>* </sup>To whom correspondence should be addressed. Email: jwideng@kth.se. Tel: +46-8-7907813</p> <p> </p> <p><strong>The data files are grouped into the different techniques used to generate them, and refer to the figures/tables in the manuscript where the extracted results are presented. </strong></p> <p> </p> <p><strong>ABSTRACT</strong></p> <p>Cyanine fluorophores are extensively used in fluorescence spectroscopy and imaging. Upon continuous exciation, especially at excitation conditions used in single-molecule and super-resolution experiments, photo-isomerized states of cyanines easily reach population probabilies of around 50%. Still, effects of photo-isomerization are largely ignored in such experiments. Here, we studied the photo-isomerization of the pentamethine Cyanine 5 (Cy5) by two similar, yet complementary means to follow fluorophore blinking dynamics: fluorescence correlation spectroscopy (FCS) and transient state (TRAST) excitation-modulation spectroscopy. Additionally, we combined TRAST and spectrofluorimetry (spectral-TRAST), whereby emission spectra of Cy5 were recorded upon different rectangular pulse-train excitations. We also developed a framework for analyzing transitions between multiple emissive states in FCS and TRAST experiments, how the brightness of the different states is weighted, and what initial conditions that apply. Our FCS, TRAST and spectral-TRAST experiments showed significant differences in dark state relaxation amplitudes for different spectral detection ranges, which we attribute to an additional, red-shifted emissive photo-isomerized state of Cy5, not previously considered in FCS and single-molecule experiments. The photo-isomerization kinetics of this state indicate that it is formed under moderate excitation conditions, and its population and emission may thus deserve also more general consideration in fluorescence imaging and spectroscopy experiments.</p>
Sr-Nd isotopic fingerprints of Red River sediments and its implication for provenance discrimination in the South China Sea
<p>Supplementary Data of the Manuscript titled 'Revisit Sr-Nd isotopic fingerprints of Red River sediments and its implication for provenance discrimination in the South China Sea'</p> <p>Table A1. elemental compositions of Red River estuarine sediment samples</p> <p>Table A2. Literature data on sediment Sr-Nd isotopic ratios, Rb/Sr and K<sub>2</sub>O/(Na<sub>2</sub>O+CaO) in the Red River catchment</p> <p>Table A3. Compiled data on Sr-Nd isotopic compositions of rocks in the Thao River, Song Da and Song Lo basin</p> <p>Table A4. Compiled data of sediment Sr-Nd isotopic composition in the Pearl River, Red River and Mekong River</p>
Measurement of the albedo of red soil in Ghana in 2020
<p>The albedo of red soil in Ghana was measured with an Albedometer in three different locations in 2020 following the <em>ASTM Standard E1918-06</em>. The dataset contains the calibration and the resolved measurements of the three other albedo measurement locations. Additionally, the uncertainty calculation is included in the dataset.</p>
Supplemental Figure S4. Nitrogen losses through feces, urine and milk as a percentage of the total N intake through feed (indicated by the red line), for each treatment group (CTRL, MetLys and MetLysHis) in each period (depletion, RP-AA, cross-back).
<p><strong>Supplemental Figure S4.</strong> Nitrogen losses through feces, urine and milk as a percentage of the total N intake through feed (indicated by the red line), for each treatment group (CTRL, MetLys and MetLysHis) in each period (depletion, RP-AA, cross-back). No significant differences nor tendencies were determined between treatment groups within every period by Tukey’s pairwise comparison test (<em>P</em> > 0.10). During the whole experiment all treatment groups received a low protein diet (CTRL). The cows in the MetLys group received rumen-protected (RP) Met (Excential Rumenpass MET, Orffa Additives) and RP-Lys (AjiPro-L, Ajinomoto H&N) during the RP-AA period. The cows in the MetLysHis group received RP-Met, RP-Lys and RP-His (experimental RP-His product, Ajinomoto Co.) during the RP-AA period.</p>
Data from: Physiological response of mature red spruce trees to partial and complete sapwood severing
<p> Drought frequency and severity are projected to increase in many regions of the world, yet it remains unclear how mesic forest trees will respond to these novel climate conditions. Experimentally imposing drought in forests at the stand scale is logistically difficult, however, disturbing the hydraulic functioning of individual trees can induce severe water stress and may inform how large trees respond to future droughts. In this study, we manipulated water availability of red spruce (Picea rubens Sarg.) trees by partially or completely severing sapwood, and measured impacts on water relations and photosynthetic efficiency over four months. Trees with total sapwood severed (TOT) experienced a rapid 96.7% reduction in daily sap flow whereas trees with only partial sapwood severed (PAR; estimated 2 – 5% sapwood remaining) and no sapwood severed (CON; phloem girdled) experienced average reductions of 74.3% and 4.6%, respectively. Sapwood severing in TOT trees resulted in declining midday shoot water potential compared to PAR and CON trees, but TOT trees did not surpass the water potential indicative of 50% loss of conductivity until approximately 12 weeks post treatment. At seven weeks post treatment, TOT trees had 6.8 times lower midday stomatal conductance than PAR and CON trees. Furthermore, branch- and crown-wood water potentials reached extreme values (below measurement threshold of -7.7 MPa) in TOT trees by the time of tree harvest at 18 weeks but remained high and did not differ between PAR and CON trees. Our results indicate that with minimal intact sapwood, PAR trees still had sufficient hydraulic functioning to avoid water stress, while TOT trees had temporary resistance to water stress likely associated with declines in carbon sequestration and growth. These findings advance our understanding of how red spruce may physiologically respond to periods of water stress in future climates.</p>
Epiphytic common core bacteria in the microbiomes of co-located green (Ulva), brown (Saccharina, Gelidium) and red (Grateloupia) macroalgae
<p>We collected specimens of <em>Ulva </em>sp. (green algae), <em>Saccharina </em>sp. (brown algae), <em>Grateloupia </em>sp., and <em>Gelidium </em>sp. (both red algae) during all four seasons from a coastal reef in Weihai, China, and analyzed their surface-colonizing bacteria in comparison to surrounding seawater and sediment controls. 16S rRNA amplicon sequencing, extensive plate cultivation, sequencing of selected strains, and sequencing of 23 metagenomes were performed in this study. Besides composition, we analyzed the potential of phycosphere bacteria to degrade algal polysaccharides and to produce bioactive secondary metabolites. This comprehensive dataset represents a significant stepping stone towards a better understanding of macroalgal phycosphere bacteria and paves the way to functional studies on representative strains.</p>
Rum and Argyll red deer genotype files
<p>The red deer population inhabiting the north block of the Isle of Rum, Scotland (57°0'N, 6°20'W) has been studied at an individual level since 1971 and was the main focus of this study. After quality control 39,587 autosomal SNPs genotyped in 3046 individuals were retained for analysis. This study also used equivalent genotype data for 157 individuals from a mainland population of red deer from Argyll, Scotland. Data files are in plink readable format (.bed .bim .fam) and include a .txt file with estimated SNP positions in centimorgans (cM). If you plan to analyse the data, we request that you inform us, see README file for more information. </p>
Data from: Mesopredator release among invasive predators: controlling red foxes can increase feral cat density and alter their behaviour
<p>The mesopredator release theory predicts that the density of subordinate predators will increase as dominant predators decline. Persistent debate around mesopredator release in part reflects the lack of robust, replicated experiments to test this theory, and the use of population indices which confound changes in mesopredator density and detectability. This uncertainty has immediate impacts for conservationists who are faced with managing sympatric invasive predators.</p> <p>We used replicated experimental designs and spatially-explicit models to examine whether mesopredator release of the feral cat <em>Felis catus</em> occurs in response to targeted control of the introduced red fox <em>Vulpes vulpes</em>. We surveyed three Control-Impact paired landscapes in a region with long-term fox control (1080 poison baiting), and conducted a Before-After Control-Impact Paired-Series experiment in another region. We used fox occurrence as a simple metric of fox populations and estimated feral cat density with spatial mark-resight models.</p> <p>Lethal fox control had varying effects on fox occurrence, consistent with variation in the duration and intensity of poison baiting. Correspondingly, responses in feral cat density ranged from negligible to a 3.7-fold higher density in fox-baited landscapes. At a fine spatial scale (200 m<sup>2</sup>), feral cat density was negatively associated with fox occurrence probability across both regions. These results were consistent with mesopredator release, although uncertainty was high in the region where fox control had only recently commenced.</p> <p>Feral cat detectability also varied across the (artificially-manipulated) gradients of fox occurrence probability. In one region, nonlinear models indicated that feral cats had lower detection and increased movement rates when foxes were uncommon, giving way to density suppression at high fox occurrence probabilities.</p> <p><em>Synthesis and applications.</em> Our study provides replicated, experimental evidence that dominant predator suppression can be associated with a higher mesopredator density. Mesopredator release can manifest as changes in both behaviour and density, distorting inference if these processes are not distinguished. Our results may help explain why fox control does not consistently improve native prey persistence, suggesting integrated pest management may be necessary to improve conservation outcomes.</p>
Data from: Temporary thinning shock in previously shaded red spruce
<p class="MsoNormal">Silvicultural thinning can lead to rapid microclimatic changes for residual trees. Despite the benefits of decreased competition, thinning may induce "thinning shock" – temporary negative physiological responses as trees acclimate to new conditions. We examined the impact of thinning on the microclimate and physiology of residual, previously shaded red spruce (<em>Picea rubens</em> Sarg.) trees relative to non-thinned controls. Both daily maximum temperature and vapor pressure deficit increased post-thinning, with larger increases observed on hotter and drier days. In response to these environmental changes, we found clear evidence of physiological declines. At 1.7 weeks post thinning, we found a 0.59-MPa reduction in average midday water potential relative to control trees, which lasted for an additional 1.4 weeks. Thus, the trees in the thinning treatment were at or beyond published estimates of needle turgor loss. Thinning decreased photosynthetic efficiency of current-year needles by 3.8% after two weeks, and it declined by 1.3% per week for the remainder of the growing season. These results suggest that thinning shock occurs in red spruce, a shade-adapted, climate-sensitive species. Thinning shock may contribute to the lagged growth responses commonly observed post-thinning, and these effects may be more extreme in novel future climates.</p>
Three common sampling techniques in Pleistocene coral reefs of the Red Sea: A comparison
<p>Line Intercept Transects (LIT), Point Intercept Transects (PIT) and Photoquadrats (PQ) are the most common quantitative sampling techniques in modern and fossil coral reefs. Data from coral reefs obtained by the different methods are generally compared between various reef ages and localities. Quaternary reefs from warmer interglacial periods, which represent climate scenarios projected for the future, are particularly interesting for comparisons with modern reefs. Importantly, fossil reefs differ from modern reefs because they are diagenetically altered and time-averaged. While several studies have compared different quantitative methods in modern reefs, very few have dealt with the comparability among fossil and between fossil and modern reefs. Here, we compare LIT, PIT at 10-, 20- and 50-cm intervals and PQ in two Pleistocene reef localities in Egypt. We find that alpha diversity, reef cover and community composition are dependent on the method. Results gained with plotless methods (LIT, PIT) differ strongly from results gained with plot methods (PQ). However, coral cover results are similar with LIT and PIT, and community composition is indistinguishable between the two, but alpha diversity depends on the interval used for PIT. We discuss the implications of our findings for comparing coral reefs of various ages and localities. We recommend surveying Pleistocene reefs with PIT at 20 cm intervals. This is because (1) alpha diversity is well captured, (2) the amount of time-averaging recorded by PIT is reduced compared to PQ, (3) the PIT results can be directly compared to reefs analysed by LIT and (4) the method is less time-consuming than LIT and PQ.</p>
MESA inlists for 'Revisiting the Red Giant Branch Hosts KOI-3886 and $\iota$ Draconis. Detailed Asteroseismic Modeling and Consolidated Stellar Parameters' by Campante et al.
<p>MESA inlists used in preparation of the paper 'Revisiting the Red Giant Branch Hosts KOI-3886 and $\iota$ Draconis. Detailed Asteroseismic Modeling and Consolidated Stellar Parameters' by Campante et al. Two folders are provided in the .zip file:</p> <ul> <li>TL_Pipeline — inlists (MESA release version 12115) used to build the grid of stellar models used in Sect. 4.1 of the paper.</li> <li>JO_Pipeline — inlists (MESA release version 12778) used to build both grids of stellar models used in Sect. 4.2 of the paper.</li> </ul>
Developmental changes in red-eyed treefrog embryo behavior increase escape-hatching success in wasp attacks
<p>The arboreal embryos of red-eyed treefrogs (<em>Agalychnis</em> <em>callidryas</em>) hatch prematurely to escape from egg-predators, and escape success increases with age. We assessed developmental changes in the behavior and hatching performance of embryos attacked by wasps (<em>Polybia</em> <em>rejecta</em>) and their contributions to improved embryo survival. We recorded videos of 4- and 5-day-old embryos exposed to wasp attacks and determined each embryo's fate. For a stratified random sample of embryos that escaped and died, we determined the occurrence, sequence, and timing of events during wasp-embryo interactions. We constructed path diagrams of event sequences, tested for age effects on transition probabilities, and measured durations of periods between key events. Overall escape success was 38% higher in older embryos. They were more likely to hatch pre-emptively than younger ones, thus less likely to experience direct attacks, suggesting that developmental gains in mechanosensory sensitivity may increase hatching responses to indirect cues. During direct attacks, embryos were equally likely to be captured by wasps at both ages and hatching speed was similar, suggesting no relevant difference in escape-hatching performance. After a wasp ruptured their egg capsule, older embryos were more likely to exit and did so much sooner; younger embryos remained in ruptured capsules for longer and were more likely to be attacked again. This developmental change in embryo behavior indicates decreased tolerance for egg-stage risk as the chance of tadpole survival increases, suggesting that ontogenetic adaptation to changing risk trade-offs contributes strongly to the developmental increase in escape success.<span></span></p>
ReD&T_1.2_Anonymised_data
<p>Downloaded data for Phase 1 round 2 survey: looking for consensus.</p> <p>The data is anonymised.</p> <p>Following calculations are included</p> <ol> <li>Average</li> <li>Standard deviation</li> <li>Median</li> <li>Frequency count</li> <li>Frequency percentage</li> <li>Cumulative percentage</li> </ol>
Inlist and Data Files for "Mixed Mode Asteroseismology of Red Giant Stars Through the Luminosity Bump"
<p>MESA (r12778) and GYRE (version 6.0) inlist files used in the work described in "Mixed Mode Asteroseismology of Red Giant Stars Through the Luminosity Bump". Published in The Astrophysical Journal, Volume 931, Issue 2, id.116 </p> <p>Two subdirectories are provided in the archive:</p> <p>1) The directory called "inlists_and_src" contains different MESA inlist files for different evolutionary period (inlist_pms=pre main sequence to beginning of the red giant phase and inlist_rgb=red giant branch through the RGB luminosity bump) of the stellar model. The four subdirectories refer to the four overshooting prescriptions described in the paper. The different inlist files for the different evolutionary states are called by putting their names in the "inlist" file. Two example gyre (version 6.0) inlists are also included in the "inlists" subdirectory. The inlist titled gyre_pi.in calculates the radial, dipole, and quadrupole pi mode frequencies, while the inlist titled gyre.in calculates the non-pi mode frequencies. </p> <p>A custom diffusion cutoff (see Viani et al. 2018, ApJ, 858, 28) are included in the run_star_extras.f file in the "src" subdirectories. There is also a custom subroutine called "other_adjust_mlt_gradT_fraction_overshoot" which is used to change the temperature gradient within the overshooting region for models incorporating full/penetrative overshoot. The subroutine is activated by setting "x_logical_ctrl(1)" to .true. in the MESA inlists. The amplitude of the full overshooting region is controlled with "x_ctrl(1)"</p> <p>2) The subdirectory named "example_data" include the MESA modelling results used in the paper to produce figure 16, showing the evolution of the gravity mode phase offset through the red giant branch luminosity bump. The GYRE-calculated frequencies are included in the GYRE_OUTPUTS subdirectories. In these models, overshooting from the red giant convective envelope was turned off. </p>
Optimal prey for red fox cubs – an example of dual optimizing foraging strategy in foxes from a dynamic wetland habitat
<p>The red fox (<em>Vulpes</em> <em>vulpes</em>) is the most abundant mesopredator in the Central-European region. Detailed knowledge about their feeding behavior is important both from ecological and wildlife management reasons. Food choices of foxes are poorly predictable in high-biodiversity marshlands. The main aim of our study was to sample parallel the main food-type abundances in the study area and analyze the diet of fox cubs and cohabiting adults across three years during the period of maternal dependence of the cubs. According to the optimal foraging theory, we predicted that the cubs' diet would show higher energy content, would be more varied, and the individual prey species fed to the young would be larger. We analyzed the composition of adult fox and cub fecal samples collected separately around dens in a marshland of western Hungary, May 2014, 2017 and 2020, when the abundance values of main food sources differed. Rodents and waterfowl dominated the diet, but their relative occurrence in the samples showed yearly variations. We found that vixens follow a dual optimizing foraging strategy regarding their provisioning of the cubs and their own diet. Adult foxes optimized their diet according to the actual yearly abundances of their main food sources. Additionally, they preferred prey items that can be consumed at the site of capture (large carrion and small individual prey items). Cubs on the other hand were provisioned with optimal high-energy food, even if those in question became less abundant in that year. Vixens mostly fed to their young either larger rodents and waterfowl, or multiple small rodents at a time – these types of prey are both optimal for transportation as a single load. Providing optimal prey at an early age in a changing environment may contribute to the ecological success of the red fox.</p>
Model for: Characterizing long‐term population conditions of the elusive red tree vole with dynamic individual‐based modeling
<div class="abstract"> <p>Old growth forests are declining globally, threatening dependent wildlife. Many arboreal old‐growth obligates, such as the threatened red tree vole, are difficult to monitor for changes in habitat occupancy, and abundance. Yet, conservation planning relies on this information to prevent population declines. We integrated a range of species, habitat, and landscape change information to develop a dynamic habitat‐population model. The spatial individual‐based model simulated dynamic patterns of occupancy that responded to annual habitat maps, describing 36 years of observed change. We simulated population dynamics and local movement to characterize changes in occupancy and abundance, and the capacity of remaining habitat to support red tree voles. Red tree vole redistribution patterns strongly corresponded to wildfire footprints and timber extraction locations. Population strongholds are likely to exist in clumped pockets of old‐growth forest that were unaffected by wildfire and in protected old forest reserves. However, the exact number and locations of local clusters remain uncertain. Simulated population losses occurred at different paces in different places, underscoring the need for recurring evaluation of population changes with field occupancy surveys and modeled evaluations that can anticipate potential connectivity and extirpation thresholds. This modeling approach was effective at leveraging existing information for a data‐light species to assess how historical changes to the quantity, quality, and configuration of habitat likely influenced the potential landscape capacity, species abundance, and distribution. Dynamic individual‐based modeling can benefit conservation planning for red tree vole and other reclusive forest species by providing biologically nuanced assessments of abundance and distribution. Such models can also project the long‐term benefits and impacts of spatially explicit land management plans.</p> </div> <div class="abstract"></div>
Sexual selection in seaweed? Testing Bateman's principles in the red alga Gracilaria gracilis
<p>In anisogamous species, sexual selection is expected to be stronger in males. Bateman's principles state that the variance in (i) reproductive and (ii) mating success is greater for males and (iii) the relationship between reproductive success and mating success (the Bateman gradient) is also stronger for males than for females. Sexual selection, based on Bateman's principles, has been demonstrated in animals and some angiosperms, but never in seaweed. Here we focus on the oogamous haploid-diploid rhodophyte <em>Gracilaria gracilis</em> in which previous studies have shown evidence for non-random mating, suggesting the existence of male-male competition and female choice. We estimated mating and reproductive success using paternity analyses in a natural population where up to 92% of fertilizations occurred between partners of that population. The results show that the variance in mating success is significantly greater in males than in females and that the Bateman gradient is positive only in males. Distance to female partners also explains a minor part of the variance in male mating success. Although there is no evidence for sexual dimorphism, our study supports the hypothesis that sexual selection occurs in <em>G. gracilis</em>, likely on male traits, even if we cannot observe, qualify, or quantify them yet.</p>
Data from: Metrics for quantifying the contributions of different threats to Red Lists
<p>The dataset contains data from four Norwegian Red Lists. Data included are the Red List Categories, reasons for change, and threats. These data were used to evaluate metrics for quantifying the contributions of different threats to Red Lists, described by <a href="https://doi.org/10.1111/cobi.14105">Sandvik & Pedersen (2023)</a>.</p> <p>The dataset contains six files:</p> <ol> <li>species.csv (semicolon-delimited plain-text file with Red Lists for species)</li> <li>Species.pdf (explanations of species.csv)</li> <li>Species.xlsx (microsoft excel spreadsheet workbook with Red Lists for species)</li> <li>ecosyst.csv (semicolon-delimited plain-text file with the Red List for ecosystems)</li> <li>Ecosyst.pdf (explanations of ecosyst.csv)</li> <li>Ecosyst.xlsx (microsoft excel spreadsheet workbook with the Red List for ecosystems)</li> </ol> <p>The excel workbooks contain the same information as the respective csv and pdf files combined.</p> <p>Columns, abbreviations etc. are explained in the excel and pdf files.</p> <p>Data were derived from the following sources, all published by the <a href="http://www.biodiversity.no">Norwegian Biodiversity Information Centre</a>:</p> <ul> <li> <a href="http://www.artsportalen.artsdatabanken.no/">2010 Norwegian Red List for species</a></li> <li> <a href="https://www.artsdatabanken.no/Rodlista2015">2015 Norwegian Red List for species</a></li> <li> <a href="https://artsdatabanken.no/rodlistefornaturtyper">2018 Norwegian Red List for ecosystems and habitat types</a></li> <li> <a href="https://artsdatabanken.no/lister/rodlisteforarter/2021">2021 Norwegian Red List for species</a></li> </ul> <p><strong>R</strong> code to analyse the dataset and reproduce the results of the paper is available on Zenodo via <a href="https://doi.org/10.5281/zenodo.7843806">doi:10.5281/zenodo.7843806</a>.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.