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191
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ShareScore release 0.9.0
Dataset results
191 results for “cis-regulatory element”
Mapping cis-regulatory elements in human excitatory and inhibitory neurons links psychiatric disease heritability and activity-regulated transcriptional programs [RNA-seq]
GEO Series GSE196855. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
CRISPR base editing of cis-regulatory elements enables target gene perturbations
GEO Series GSE204833. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Transcription of mammalian cis-regulatory elements is restrained by actively enforced early termination [4C]
GEO Series GSE66950. Mus musculus. 2 samples. Type: Other.
Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish
GEO Series GSE20600. Danio rerio. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins
GEO Series GSE88700. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
A compendium map of Cis-Regulatory Elements in the Pig Genome and epigenetic comparison with the human Genome
GEO Series GSE143288. Sus scrofa. 200 samples. Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Widespread impact of nucleosome remodelers on transcription at cis-regulatory elements [RNA-seq]
GEO Series GSE256313. Mus musculus. 75 samples. Type: Expression profiling by high throughput sequencing.
Unraveling cis-regulatory elements by mapping structural changes in mRNAs
GEO Series GSE102069. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing; Other.
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
GEO Series GSE21512. Mus musculus. 52 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
Specific genomic features underlie the co-option of SVA transposons as cis-regulatory elements in the human genome
GEO Series GSE192951. Homo sapiens. 23 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Dissection of nucleosome remodeling at cis-regulatory elements in stimulated macrophages [chromatin-associated RNA-Seq]
GEO Series GSE119692. Mus musculus. 15 samples. Type: Other.
FOXP3 Expression Depends on Cell-Type Specific Cis-Regulatory Element and Transcription Factor Circuitry [CRISPRoff_RNA-seq]
GEO Series GSE305062. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
CRISPRi proliferation dropout screen of EGFR cis-regulatory elements
GEO Series GSE139415. Homo sapiens; synthetic construct. 3 samples. Type: Other.
Mapping cis-regulatory elements in human excitatory and inhibitory neurons links psychiatric disease heritability and activity-regulated transcriptional programs [ATAC-seq]
GEO Series GSE196854. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Widespread Long-range Cis-Regulatory Elements in the Maize Genome
GEO Series GSE120304. Zea mays. 81 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other.
NET-CAGE Characterizes the Dynamics and Topology of Human Transcribed Cis-regulatory Elements
GEO Series GSE118075. Homo sapiens; Mus musculus. 144 samples. Type: Expression profiling by high throughput sequencing; Other.
Anemia Activates a Network of Cis-Regulatory Elements in Red Blood Cell Regeneration
GEO Series GSE212224. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
A map of cis-regulatory elements and 3D genome structures in zebrafish
GEO Series GSE134055. Danio rerio. 204 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Targeting cis-regulatory elements of FOXO family is a novel therapeutic strategy for induction of leukemia cell differentiation
GEO Series GSE227114. Homo sapiens. 6 samples. Type: Expression profiling by array.
Transposable element (TE) subfamily cis-regulatory activities estimated from 441 transgene overexpression experiments in human embryonic stem cells (hESCs)
<p>Additional file 1 from "Statistical learning quantifies transposable element-mediated cis-regulation", Pulver et al.</p> <p>Raw expression data came from Nakatake et al., Cell Reports 2020</p> <p>Activities were estimated using craTEs, described in Pulver et al. 2023, with parameter L = 2.5e5 bp.</p> <p>Rows are transposable element (TE) subfamilies, columns are as follow:</p> <ul> <li>Estimate: estimated cis-regulatory activity, correponds to a linear regression coefficient</li> <li>Std. Error: standard error of linear regression coefficient</li> <li>t value: t value corresponding to t-test with H0: Estimate = 0 and HA: Estimate != 0</li> <li>Pr(>|t|) : probability (p-value) of observing a more extreme t value</li> <li>p_adj: p-values adjusted with the Benjamini Hochberg procedure</li> <li>TE: TE subfamily</li> <li>condition: concatenation of the name of the overexpressed transgene and the timepoint</li> <li>transgene: symbol for the overexpressed transgene</li> <li>timepoint: time under transgene induction via DOX treatment</li> </ul>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.