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Video demonstration of the Greeting behaviour element in the Interactive group (behaviour element ID code: IIGR) for Korcsok and Korondi (2023), Biologia Futura

The video demonstrates the behaviour element: Greeting in the interactive experimental group, as exhibited by a social robot (behaviour element ID code: IIGR). The video is part of an ethogram cataloguing the behaviour elements of the robot, described in the publication: How do you do the things that you do? - Ethological approach to the description of robot behaviour submitted to Biologia Futura (2023) by Korcsok, B. and Korondi, P.

Video demonstration of the Moving to checkpoint (behaviour element ID code: ILMC); and Head orientation during locomotion (behaviour element ID code: IHOL) behaviour elements in the Interactive group for Korcsok and Korondi (2023), Biologia Futura

The video demonstrates the behaviour elements: Moving to checkpoint (behaviour element ID code: ILMC); and Head orientation during locomotion (behaviour element ID code: IHOL) in the interactive experimental group, as exhibited by a social robot. The video is part of an ethogram cataloguing the behaviour elements of the robot, described in the publication: How do you do the things that you do? - Ethological approach to the description of robot behaviour submitted to Biologia Futura (2023) by Korcsok, B. and Korondi, P.

Video demonstration of the Standing to table behaviour element in the Minimally interactive group (behaviour element ID code: MLST) for Korcsok and Korondi (2023), Biologia Futura

The video demonstrates the behaviour element: Standing to table in the minimally interactive experimental group, as exhibited by a social robot (behaviour element ID code: MLST). The video is part of an ethogram cataloguing the behaviour elements of the robot, described in the publication: How do you do the things that you do? - Ethological approach to the description of robot behaviour submitted to Biologia Futura (2023) by Korcsok, B. and Korondi, P.

Video demonstration of the Leaving table behaviour element in the Minimally interactive group (behaviour element ID code: MLLT) for Korcsok and Korondi (2023), Biologia Futura

The video demonstrates the behaviour element: Leaving table in the minimally interactive experimental group, as exhibited by a social robot (behaviour element ID code: MLLT). The video is part of an ethogram cataloguing the behaviour elements of the robot, described in the publication: How do you do the things that you do? - Ethological approach to the description of robot behaviour submitted to Biologia Futura (2023) by Korcsok, B. and Korondi, P.

ELemental abundances of Planets and brown dwarfs Imaged around Stars (ELPIS): I. Potential Metal Enrichment of the Exoplanet AF Lep b and a Novel Retrieval Approach for Cloudy Self-luminous Atmospheres

This dataset contains materials presented in the paper ``ELemental abundances of Planets and brown dwarfs Imaged around Stars (ELPIS): I. Potential Metal Enrichment of the Exoplanet AF Lep b and a Novel Retrieval Approach for Cloudy Self-luminous Atmospheres'' (Zhang et al. 2023) for publication by Astronomical Journal. Please cite this paper and the Zenodo repository if these data are used in your work. A readme file README_ELPIS_AFLep.dat describes the content of the entire dataset. Description of other files: <ul> <li>tull_spectrum_AF_Lep_A.zip: Tull spectrum of the host star AF Lep A (Section 2)</li> <li>stellar_parameters_AF_Lep_A.zip: Stellar parameters of AF Lep A inferred by isochrones (Section 3)</li> <li>orbit_analysis_AF_Lep_b.zip: Orbit analysis of the exoplanet AF Lep b (Section 4)</li> <li>RCE_dlnT_dlnP_forward_models.zip: The radiave-convective equilibrium (dlnT/dlnP) profiles of several sets of forward models (shown in Figure 5 and Section 6.2)</li> <li>mini_grid_emission_spectra.zip: A mini-grid of modeled emission spectroscopy (Figure 6 and Section 6.4)</li> <li>fitted_TP_profiles.zip: Fitted T-P profiles from multiple retrieval runs (Section 7)</li> <li>fitted_model_spectra.zip: Fitted model spectra from multiple retrieval runs (Section 7)</li> <li>retrieval_parameter_posteriors.zip: Parameter posteriors from multiple retrieval runs (Section 7).</li> </ul>

Fig. 5 in To design, or not to design? Comparison of beetle ultraconserved element probe set utility based on phylogenetic distance, breadth, and method of probe

Fig. 5. Phylogenetic trees of Scarabaeidae generated using UCEs; node values indicate bootstrap support. A)The tree produced with the Scarab 3kv1 probe set. B) The topology produced with the Adephaga 2.9kv1 probe set.

Fig. 1 in To design, or not to design? Comparison of beetle ultraconserved element probe set utility based on phylogenetic distance, breadth, and method of probe

Fig. 1. Phylogenetic relationships based on McKenna et al. (2019) among select Coleoptera taxa relevant to or included in UCE probe design. Color (online),

Fig. 3 in To design, or not to design? Comparison of beetle ultraconserved element probe set utility based on phylogenetic distance, breadth, and method of probe

Fig. 3. UCE loci recovery during in silico testing plotted against different metrics: A) average genetic distance estimated based on common gene fragments used in phylogenetics; B) average genetic distance estimated using BUSCO genes; C) N50 assembly metrics; and D) BUSCO S values.

Fig. 2 in To design, or not to design? Comparison of beetle ultraconserved element probe set utility based on phylogenetic distance, breadth, and method of probe

Fig. 2. Schematical overview of the workflow for the present study.Workflow proceeds from left to right and top to bottom.The tablets correspond to the three broader segments of the study: genomic resource generation, probe design, and in silico testing; within tablet boundaries can be found associated taxon sets, data, experimentation, and results. Arrows indicate the flow of data, associated results, and the location results can ultimately be found. Color corresponds to membership within a taxon set or probe set.The red boxes around Hydro 2.7kv1 and Scarab 3kv1 denote final optimized, tailored probe set design tailored for Hydrophiloidea and Scarabaeidae based on the results of this study. Length of 75CM box corresponds to alignment length. Abbreviations used: NCBI, National Center for Biotechnology Information; 75CM, 75% complete matrix; AMAS, alignment manipulation and summary statistics (Borowiec 2016); R-F, Robinson– Foulds distance (Robinson and Foulds 1981).

Dataset for Book Chapter Trace Elements and their Isotopes in Streams and Rivers

Dataset for Chapter Trace Elements and their Isotopes in Streams and Rivers. A dataset listing all trace element concentrations used for figures in the Chapter. The occurrence and speciation of trace elements in streams and rivers are controlled by interconnected hydrogeological, biogeochemical, and anthropogenic factors that include rock weathering, climate, vegetation, and land use within the watershed. The purpose of this chapter is to provide a broad overview of trace element abundance, speciation, and mobility in streams and rivers. We also discuss how trace elements are mobilized into stream networks and transformed during transport. Select isotopic systems are reviewed in order to provide examples of how isotopic analyses can be used to understand geochemical and anthropogenic processes. The occurrence and speciation of trace elements in streams and rivers are controlled by interconnected hydrogeological, biogeochemical, and anthropogenic factors that include rock weathering, climate, vegetation, and land use within the watershed. The purpose of this chapter is to provide a broad overview of trace element abundance, speciation, and mobility in streams and rivers. We also discuss how trace elements are mobilized into stream networks and transformed during transport. Select isotopic systems are reviewed in order to provide examples of how isotopic analyses can be used to understand geochemical and anthropogenic processes.

opencc-by-4.0Oct 2023View details →

Supplemental information data from: "Alkali Trace Elements Observed by MarSCoDe LIBS at Zhurong Landing Area on Mars: Quantitative Analysis and Its Geological Implications"

This dataset includes the normalized peak areas of MarSCoDe scietific targets used in Table 3 of the corresponding article. The specific peaks are listed below. Data Set S1: Li 670.97 nm, Fe 260.04 nm, Al 309.37 nm, Ca 318.03 nm, Mg 518.15 nm, K 766.70 nm, and Na 818.55/819.70 nm. Data Set S2: Sr 421.67 nm, Fe 260.04 nm, Al 309.37 nm, Ca 318.03 nm, Mg 518.15 nm, K 766.70 nm, and Na 818.55/819.70 nm. Data Set S3: S 564 nm,  Fe 260.04 nm, Al 309.37 nm, Ca 612.39 nm, Mg 448.24 nm, K 766.70 nm, and Na 589.16/589.76 nm.

dryad32/100

Imaging files for: ACD15, ACD21, and SLN regulate accumulation and mobility of MBD6 to silence genes and transposable elements

It's well known that DNA methylation is linked to gene silencing but the mechanisms of how proteins that bind the DNA methylation cause gene silencing remains unclear. We demonstrated that the novel MBD5/6 complex contains three chaperone proteins, called ACD15, ACD21, and SLN, which specifically mediate the gene silencing function. ACD15 and ACD21 bridge the interaction of SLN to MBD5 and/or MBD6 while also functioning to drive the accumulation of the MBD5/6 complex at CG methylation sites. We further discovered that SLN also regulates the accumulation of the MBD5/6 complex and regulates the turnover of all protein members once accumulated at meCG sites. To demonstrate these results we primarily used fluorescence, confocal microscopy using RFP tagged MBD6, YFP tagged ACD15, and CFP tagg ACD21 and SLN imaging the roots of Arabidopsis thaliana. We expressed these constructs either alone or together in multiple mutant lines including mbd5 mbd6, acd15, acd21, acd15 acd21, sln, and acd15 acd21 sln mutant plants. We also truncated MBD6 to remove the C terminus, called the C term deletion, as well as a version of MBD6 lacking the C terminus but with the domain necessary for interaction with ACD15 added back (MBD6 plus StkyC). With these microscopy experiments, we were able to demonstrate the specificity of ACD15 for the StkyC domain, the function of the chaperone proteins, and linke protein accumulation with gene silencing.

opencc-zeroOct 2023View details →

opencc-by-4.0Oct 2023View details →

Element library for p-refinement for 3D finite element applications

Open the record for dataset details and reuse information.

opencc-by-4.0Oct 2023View details →

Supplementary Tables for "Population-level transposable element expression dynamics influence trait evolution in a fungal crop pathogen"

Supplementary Table S1: Genomic localization of TEs in gene elements and 10 kb windows upstream and downstream of the transcription start site (TSS) in the reference genome IPO323.Supplementary Table S2: Genome-wide TE insertion polymorphism (TIPs) in the pathogen population. 0 represents TE absence and 1 represents TE presence.Supplementary Table S3: Gene expression (log transformed RPKM) values across the population.Supplementary Table S4: Locus-specific transcript abundance at individual TE loci (FPKM) across individuals.Supplementary Table S5: Percent of expressed copies within each TE family in the reference genome IPO323 and percent expressed TE copies in each TE family across the population.Supplementary Table S6: Linkage disequilibrium of TIP in the genome and neighboring SNPs within the 600bp distance from the TE loci.Supplementary Table S7: Genome-wide association mapping of the virulence-associated trait (PLACP: percent leaf area covered by pycnidia) and TE insertion polymorphisms in the genome.Supplementary Table S8: metabolite peak variation in the pathogen population for individual isolatesSupplementary Table S9: TIPs in the genome significantly associated with metabolite peak intensity variation in the pathogen population (filtered by Bonferroni threshold).Supplementary Table S10: SRA accession list of RNAseq reads.

The Diagnostic Value of Nitrogen Element (N) in Esophagus Cancer

ClinicalTrials.gov study NCT05494359. IPD Sharing: UNDECIDED. Countries: 1. Publications: 2.

controlledIPD-YESFeb 2026View details →

A Common Elements-based Intervention to Improve Maternal Psychological Well-being and Mother-infant Interaction

ClinicalTrials.gov study NCT04252807. IPD Sharing: YES. Countries: 1. Publications: 5.

Study of the Effect of SNPs in p53 and p53 Response Elements on the Inflammatory Response to DNA Damage

ClinicalTrials.gov study NCT01143519. IPD Sharing: Not stated. Countries: 1. Publications: 3.

Trace Elements and Heavy Metals at PPROM

ClinicalTrials.gov study NCT04077944. IPD Sharing: UNDECIDED. Countries: 1. Publications: 3.

Effect of Combination of Non-sLip Element Balloon (NSE) and druG-coated bAlloon (DCB) for In-steNT Restenosis Lesions

ClinicalTrials.gov study NCT02300454. IPD Sharing: Not stated. Countries: 1. Publications: 1.