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Table S1. List of all new avian species descriptions from 2000 through 2016. Neotropical birds are indicated in yellow, whereas Asian / Australasian species are indicated in green.
<p>Is supplement to Rheindt, Frank E., Prawiradilaga, Dewi M., Ashari, Hidayat, Suparno, Gwee, Chyi Yin, Lee, Geraldine W. X., Wu, Meng Yue, Ng, Nathaniel S. R. (2020): A lost world in Wallacea: Description of a montane archipelagic avifauna. Science 367: 167-170, DOI: 10.1126/science.aax2146</p>
Antimicrobial resistance monitoring results complementing the EU Overview Summary Report on AMR in zoonotic and indicator bacteria from humans, animals and food in 2017/2018 - Ireland
<p>This dataset contains AMR monitoring results in animals and food at the isolate level pursuant to Article 9 of Directive 2003/99/EC and to Annex, part B, of Commission implementing Decision 2013/652/EU. In addition, the dataset includes any other results from isolates than the ones mentioned in the Commission implementing Decision 2013/652/EU. The quantitative minimum inhibitory concentration (MIC) data from dilution methods are included. REPORTING AUTHORITIES CONTRIBUTING TO EACH DATA COLLECTION: AMR_2018_IE_20200204: >> The Food Safety Authority of Ireland</p>
Antimicrobial resistance monitoring results complementing the EU Overview Summary Report on AMR in zoonotic and indicator bacteria from humans, animals and food in 2017/2018 - Sweden
<p>This dataset contains AMR monitoring results in animals and food at the isolate level pursuant to Article 9 of Directive 2003/99/EC and to Annex, part B, of Commission implementing Decision 2013/652/EU. In addition, the dataset includes any other results from isolates than the ones mentioned in the Commission implementing Decision 2013/652/EU. The quantitative minimum inhibitory concentration (MIC) data from dilution methods are included. REPORTING AUTHORITIES CONTRIBUTING TO EACH DATA COLLECTION: AMR_2018_SE_20200204: >> National Veterinary Institute, Swedish Zoonosis Centre</p>
Antimicrobial resistance monitoring results complementing the EU Overview Summary Report on AMR in zoonotic and indicator bacteria from humans, animals and food in 2017/2018 - Latvia
<p>This dataset contains AMR monitoring results in animals and food at the isolate level pursuant to Article 9 of Directive 2003/99/EC and to Annex, part B, of Commission implementing Decision 2013/652/EU. In addition, the dataset includes any other results from isolates than the ones mentioned in the Commission implementing Decision 2013/652/EU. The quantitative minimum inhibitory concentration (MIC) data from dilution methods are included. REPORTING AUTHORITIES CONTRIBUTING TO EACH DATA COLLECTION: AMR_2018_LV_20200204: >> Assessment and Registration Agency of Food and Veterinary Service of Latvia</p>
Antimicrobial resistance monitoring results complementing the EU Overview Summary Report on AMR in zoonotic and indicator bacteria from humans, animals and food in 2017/2018 - Spain
<p>This dataset contains AMR monitoring results in animals and food at the isolate level pursuant to Article 9 of Directive 2003/99/EC and to Annex, part B, of Commission implementing Decision 2013/652/EU. In addition, the dataset includes any other results from isolates than the ones mentioned in the Commission implementing Decision 2013/652/EU. The quantitative minimum inhibitory concentration (MIC) data from dilution methods are included. REPORTING AUTHORITIES CONTRIBUTING TO EACH DATA COLLECTION: AMR_2018_ES_20200204: >> Agencia Espaola de Consumo, Seguridad Alimentaria y Nutricin >> Ministerio de Agricultura, Pesca y Alimentacin</p>
Specific monitoring results of ESBL-/AmpC-/carbapenemase-producing bacteria and specific monitoring of carbapenemase-producing bacteria, in the absence of isolates detected complementing the European Union Overview Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2017/2018
<p>This dataset derives from the specific monitoring of E. coli producers of ESBLs/AmpC/carbapenemases, as well as the specific monitoring of carbapenemase-producers (voluntary reporting), in the absence of any isolates detected. This dataset contains only data when Total units positive equals zero '0'.</p>
Antimicrobial resistance monitoring results complementing the EU Overview Summary Report on AMR in zoonotic and indicator bacteria from humans, animals and food in 2017/2018 - Cyprus
<p>This dataset contains AMR monitoring results in animals and food at the isolate level pursuant to Article 9 of Directive 2003/99/EC and to Annex, part B, of Commission implementing Decision 2013/652/EU. In addition, the dataset includes any other results from isolates than the ones mentioned in the Commission implementing Decision 2013/652/EU. The quantitative minimum inhibitory concentration (MIC) data from dilution methods are included. REPORTING AUTHORITIES CONTRIBUTING TO EACH DATA COLLECTION: AMR_2018_CY_20200204: >> Ministry of Agriculture, Natural Resources and Evironment - Veterinary Services</p>
Antimicrobial resistance monitoring results complementing the EU Overview Summary Report on AMR in zoonotic and indicator bacteria from humans, animals and food in 2017/2018 - Iceland
<p>This dataset contains AMR monitoring results in animals and food at the isolate level pursuant to Article 9 of Directive 2003/99/EC and to Annex, part B, of Commission implementing Decision 2013/652/EU. In addition, the dataset includes any other results from isolates than the ones mentioned in the Commission implementing Decision 2013/652/EU. The quantitative minimum inhibitory concentration (MIC) data from dilution methods are included. REPORTING AUTHORITIES CONTRIBUTING TO EACH DATA COLLECTION: AMR_2018_IS_20200204: >> Icelandic Food and Veterinary Authority</p>
Database of mechanism of action paths for selected drug-disease indications
<p>Mechanistic paths that lead from drug to disease in a heterogeneous network.</p> <p>Version 1.1.0 includes a new tab `metapaths_biolink` where the majority of node and edge types have been mapped to entities and relationship slots in the <a href="https://biolink.github.io/biolink-model/">biolink model.</a> Concepts unable to be mapped at this time are represented in ALL CAPS.</p> <p>JSON version of the paths available <a href="https://github.com/SuLab/indication_moa_db/tree/1.0">on GitHub</a></p>
Chinese transcriptions of Indic terms in the translations of Ān Shìgāo 安世高 and Lokakṣema 支婁迦讖
<p>This dataset includes the Chinese transcriptions of Indic terms in the translations of Ān Shìgāo 安世高 and Lokakṣema 支婁迦讖. The coverage of of Ān Shìgāo complete, except for the two Kongōji manuscripts not included in the Taishō canon. The coverage of Lokakṣema is less systematic, including what is indexed by Karashima (2010) from the <em><em>Aṣṭasāhasrikā Prajñāpāramitā</em></em> and what was included in Coblin's (1983) study.</p> <p>Coblin, W. South (1983). <em>A handbook of Eastern Han sound glosses</em>. Hong Kong: Chinese University Press.</p> <p>Karashima, Seishi (2010). <em>A glossary of Lokakṣema's translation of the Aṣṭasāhasrikā Prajñāpāramit</em>ā. (Bibliotheca philologica et philosophica buddhica 11). Tokyo : International Research Institute for Advanced Buddhology, Soka University, 2010.</p> <p> </p> <p> </p>
Definition of techno- economic sustainability criteria and LCC indicators for bio-based products
<p>The dataset provides a set of sustainability principles to be fulfilled by the process or the product and develops a set of criteria and indicators to show how well these sustainability principles are fulfilled. Case-studies related on alternative feedstocks, bio-based products production routes, and EoL options are implemented in order to evaluate the proposed methodology.</p>
Data from: Effects of fluorescent glutamate indicators on neurotransmitter diffusion and uptake
Genetically encoded fluorescent glutamate indicators (iGluSnFRs) enable neurotransmitter release and diffusion to be visualized in intact tissue. Synaptic iGluSnFR signal time courses vary widely depending on experimental conditions, often lasting 10-100 times longer than the extracellular lifetime of synaptically released glutamate estimated with uptake measurements. iGluSnFR signals typically also decay much more slowly than the unbinding kinetics of the indicator. To resolve these discrepancies, here we have modeled synaptic glutamate diffusion, uptake and iGluSnFR activation to identify factors influencing iGluSnFR signal waveforms. Simulations suggested that iGluSnFR competes with transporters to bind synaptically released glutamate, delaying glutamate uptake. Accordingly, synaptic transporter currents recorded from iGluSnFR-expressing astrocytes in mouse cortex were slower than those in control astrocytes. Simulations also suggested that iGluSnFR reduces free glutamate levels in extrasynaptic spaces, likely limiting extrasynaptic receptor activation. iGluSnFR and lower-affinity variants nonetheless provide linear indications of vesicle release, underscoring their value for optical quantal analysis.
Data from: Leaf nutrients, not specific leaf area, are consistent indicators of elevated nutrient inputs
Leaf traits are frequently measured in ecology to provide a 'common currency' for predicting how anthropogenic pressures impact ecosystem function. Here, we test whether leaf traits consistently respond to experimental treatments across 27 globally distributed grassland sites across 4 continents. We find that specific leaf area (leaf area per unit mass)—a commonly measured morphological trait inferring shifts between plant growth strategies—did not respond to up to four years of soil nutrient additions. Leaf nitrogen, phosphorus and potassium concentrations increased in response to the addition of each respective soil nutrient. We found few significant changes in leaf traits when vertebrate herbivores were excluded in the short-term. Leaf nitrogen and potassium concentrations were positively correlated with species turnover, suggesting that interspecific trait variation was a significant predictor of leaf nitrogen and potassium, but not of leaf phosphorus concentration. Climatic conditions and pretreatment soil nutrient levels also accounted for significant amounts of variation in the leaf traits measured. Overall, we find that leaf morphological traits, such as specific leaf area, are not appropriate indicators of plant response to anthropogenic perturbations in grasslands.
Data from: Novel track morphotypes from new tracksites indicate increased Middle Jurassic dinosaur diversity on the Isle of Skye Scotland
<p>Dinosaur fossils from the Middle Jurassic are rare globally, but the Isle of Skye (Scotland, UK) preserves a varied dinosaur record of abundant trace fossils and rare body fossils from this time. Here we describe two new tracksites from Rubha nam Brathairean (Brothers' Point) near where the first dinosaur footprint in Scotland was found in the 1980s. These sites were formed in subaerially exposed mudstones of the Lealt Shale Formation of the Great Estuarine Group and record a dynamic, subtropical, coastal margin. These tracksites preserve a wide variety of dinosaur track types, including a novel morphotype for Skye: <i>Deltapodus</i> which has a probable stegosaur trackmaker. Additionally, a wide variety of tridactyl tracks shows evidence of multiple theropods of different sizes and possibly hints at the presence of large-bodied ornithopods. Overall, the new tracksites show the dinosaur fauna of Skye is more diverse than previously recognized and give insight into the early evolution of major dinosaur groups whose Middle Jurassic body fossil records are currently sparse.</p>
Monitoring Plasmodium falciparum and Plasmodium vivax using microsatellite markers indicates limited changes in population structure after substantial transmission decline in Papua New Guinea
Monitoring the genetic structure of pathogen populations may be an economical and sensitive approach to quantify the impact of control on transmission dynamics, highlighting the need for a better understanding of changes in population genetic parameters as transmission declines. Here we describe the first population genetic analysis of the major human malaria parasites, <i>Plasmodium falciparum</i> (Pf) and <i>Plasmodium vivax</i> (Pv) populations following nationwide distribution of long-lasting insecticide treated nets (LLIN) in Papua New Guinea (PNG). Parasite isolates from pre- (2005-6) and post-LLIN (2010-2014) were genotyped using microsatellite markers. Despite parasite prevalence declining substantially (East Sepik: Pf=54.9-8.5%, Pv=35.7-5.6%, Madang: Pf=38.0-9.0%, Pv: 31.8-19.7%), genetically diverse and intermixing parasite populations remained. Pf diversity declined modestly post-LLIN relative to pre-LLIN (East Sepik: Rs = 7.1-6.4, He = 0.77-0.71; Madang: Rs= 8.2-6.1, He = 0.79-0.71). Unexpectedly, population structure present in pre-LLIN populations was lost post-LLIN, suggesting that more frequent human movement between provinces may have contributed to higher gene flow. Pv prevalence initially declined but increased again in one province, yet diversity remained high throughout the study period (East Sepik: Rs=11.4-9.3, He=0.83-0.80; Madang: Rs=12.2-14.5, He=0.85-0.88). Although genetic differentiation values increased between provinces over time, no significant population structure was observed at any time point. For both species, a decline in multiple infections and increasing clonal transmission and significant multilocus linkage disequilibrium (mLD) post-LLIN was a positive indicator of impact on the parasite population using microsatellite markers. These parameters may be useful adjuncts to traditional epidemiological tools in the early stages of transmission reduction.
Data from: Evaluating tooth strontium and barium as indicators of weaning age in Pacific walruses
<p>A dataset of calcium-normalized <sup>88</sup>Sr and <sup>137</sup>Ba concentrations from laser ablation transects across the cementum layer of 107 (female: n = 84, male: n = 23) Pacific walrus (Odobenus rosmarus divergens) teeth. Dataset includes spreadsheets containing elapsed time of laser ablation transect in seconds (ElapsedTime_s; laser transect speed = 5μm/s), calcium-normalized strontium concentrations (Sr_ppm_m88; values below limit of detection replaced with 1/2*limit of detection, see methods), and calcium-normalized barium concentrations (Ba_ppm_m137; values below limit of detection replaced with 0.5*limit of detection). Photos (in .tif format) of tooth cementum used to estimate the positions of cementum growth layer groups are included for each animal. For teeth where more than one laser ablation scar is visible in the photo, an arrow is included to indicate the laser ablation scar that corresponds with the included trace element data. Finally, a Word document containing metadata (Catalog Number/ID, Sex, Median Age Est., Coll. Year, Est. Birth Year), weaning age estimates produced by both a visual and mathematical method (Sr Vis. Est., Sr Math. Est., Ba Vis. Est., Ba Math. Est.), and a descriptive grouping of the patterns of accumulation of Sr and Ba (Sr Pat., Ba Pat.) are included. See methods and accompanying paper in Methods in Ecology and Evolution for more details.</p>
Coronavirus testing indicates transmission risk increases along wildlife supply chains for human consumption in Viet Nam, 2013-2014
<p>Outbreaks of emerging coronaviruses in the past two decades and the current pandemic of a novel coronavirus (SARS-CoV-2) that emerged in China highlight the importance of this viral family as a zoonotic public health threat. To gain a better understanding of coronavirus presence and diversity in wildlife at wildlife-human interfaces in three southern provinces in Viet Nam 2013-2014, we used consensus Polymerase Chain Reactions to detect coronavirus sequences. In comparison to previous studies, we observed high proportions of positive samples among field rats (34.0%, 239/702) destined for human consumption and insectivorous bats in guano farms (74.8%, 234/313) adjacent to human dwellings. Most notably among field rats, the odds of coronavirus RNA detection significantly increased along the supply chain from field rats sold by traders (reference group; 20.7% positivity, 39/188) by a factor of 2.2 for field rats sold in large markets (32.0%, 116/363) and 10.0 for field rats sold and served in restaurants (55.6%, 84/151). Coronaviruses were also detected in rodents on the majority of wildlife farms sampled (60.7%, 17/28). These coronaviruses were found in the Malayan porcupines (6.0%, 20/331) and bamboo rats (6.3%, 6/96) that are raised on wildlife farms for human consumption as food. We identified six known coronaviruses in bats and rodents, clustered in three <em>Coronaviridae</em> genera, including the <em>Alpha-</em>, <em>Beta-</em>, and <em>Gammacoronaviruses</em>. Our analysis also suggested either mixing of animal excreta in the environment or interspecies transmission of coronaviruses, as both bat and avian coronaviruses were detected in rodent feces on wildlife farms. The mixing of multiple coronaviruses, and their apparent amplification along the wildlife supply chain into restaurants, suggests maximal risk for end consumers and likely underpins the mechanisms of zoonotic spillover to people.</p>
Performance Indicator Data for Eight Research Universities in Africa 2001 to 2015
<p>Student, staff and research performance indicator data for eight research universities in Africa from 2001 to 2015, collected by the Higher Education Research and Advocacy Network for Africa (HERANA), a project of the Centre for Higher Education Trust (CHET).</p>
Simulated time series and indicators for the Zambezi River Basin case study
<p>The archive includes:</p> <ul> <li>monthly time series over 2020-2059 time horizon of different physical variables, simulated by the Decision Analytic Framework (DAF) Strategic model of the Zambezi River Basin for the 7 interesting pathways identified in the Negotiation Simulation Lab meeting;</li> <li>a set of evaluation indicators, aggregated at different spatial and temporal scales, for the 7 interesting pathways.</li> </ul> <p>More details on physical variables and indicators included are available in the DAFNE Deliverable D7.3.</p> <p>Files are provided in the <em>csv </em>format, one per each physical variable or indicator: the first 13 rows contain metadata, while data starts at row 14 and use as many columns as the pathways considered. Metadata are the following:</p> <ul> <li><em>name</em>, time series or indicaror label</li> <li><em>author, </em>reference person or team for the specific time series</li> <li><em>created,</em> timestamp of the file creation</li> <li><em>description, </em>description of file content</li> <li><em>unit, </em>unit of measurement</li> <li><em>origin, </em>description of the simulation</li> <li><em>time_sampling,</em> whether the variable is sampled at a given point in time (instantaneous) or represents a time interval (interval)</li> <li><em>frequency, </em>time step of the time series</li> <li><em>scenario, </em>label of scenario</li> <li><em>marker_id, </em>label of the related model component</li> <li><em>id_type, </em>type of time series</li> <li><em>timestart,timeend,P1,P2,P3,P4,P5,P6,P7 : </em>header row of the data, with time information (in the matlab datenum format) at the beginning and pathways on each column</li> </ul>
Analysis of performance indicators for German Library Statistics in 2019
<p>Analyse der Berechenbarkeit von Kennzahlen der ISO 11620:2014 auf Basis der Deutschen Bibliotheksstatistik des Berichtsjahres 2019.</p> <p>Analysis of the calculability of performance indicators of ISO 11620:2014 on the basis of the German Library Statistics of the reporting year 2019.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.