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Fig. 1 in Complete plastome phylogeny and an update on cox1 intron evolution of Hyoscyameae (Solanaceae)
Fig. 1 The chloroplast genome of Scopolia carniolica. Large and small single-copy regions (LSC and SSC, respectively) and inverted repeats (IR) are indicated. Genes inside and outside the circle indicate clockwise and counterclockwise transcription directions, respectively. Gene positions are color-coded according to functional categories of genes. The
Fig. 3 in Complete plastome phylogeny and an update on cox1 intron evolution of Hyoscyameae (Solanaceae)
Fig. 3 Maximum likelihood phylogenetic trees of the tribe Hyoscyameae. A Tree based on the complete chloroplast genomes. The last inverted repeat region was removed to avoid sequence overrepresentation. The alignment length is 134,327 nt. B Tree based on nuclear ITS2 sequences. The seven individuals of Atropa
FIGURE 1. Galianthe longifolia. A. Habit. B. Stipular sheath. C–E. Long-styled flower. C. Flower. D in Advancements in Galianthe (Spermacoceae-Rubiaceae) knowledge: complete description of G. longifolia and new records for G. thalictroides in Mato Grosso do Sul, Brazil
FIGURE 1. Galianthe longifolia. A. Habit. B. Stipular sheath. C–E. Long-styled flower. C. Flower. D. Hypanthium, calyx, style, and stigma. E. Opened corolla. F–H. Short-styled flower. F. Flower. G. Hypanthium, calyx, style, and stigma. H. Opened corolla. I–K. Seed. I. Seed, dorsal view. J. Seed, ventral view. K. Seed, cross section. L. Fruit. A–H extracted from Cabral (2009), I–L de Cordeiro C.B. 1969 (C). Ilustrated by L. Simón
FIGURE 3 in Advancements in Galianthe (Spermacoceae-Rubiaceae) knowledge: complete description of G. longifolia and new records for G. thalictroides in Mato Grosso do Sul, Brazil
FIGURE 3. Distribution map of Galianthe species. A. Galianthe longifolia (red circles). B. G. thalictroides (yellow circles), blue dotted lines indicate new records.
FIGURE 2 in Phylogenetic position of Vanda coelestis (Rchb.f.) Motes (Orchidaceae; Aeridinae): evidence from complete plastome and combined traditional sequences
FIGURE 2. Maximum likelihood tree for Vanda based on combined nuclear (nrITS) and plastid DNA regions (matK, psbA-trnH, and trnL-trnF). The previously recognized sections from Gardiner et al. (2013) are highlighted by the color of branches and species. The numbers near the nodes are bootstrap percentages and Bayesian posterior probabilities (BP, BP, PP). A dash (-) indicates that a node ML MP is inconsistent between the topology of the MP/ML trees and the Bayesian tree; *node is 100 bootstrap percentage or 1.00 posterior probability.
Figure 5 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Figure 5. Phylogenetic relations of the ITS1–5.8S rDNA–ITS2–LSU rDNA sequences of Opalinida by the maximum likelihood (ML) method. The numbers at the nodes represent* respectively* the bootstrap support as computed from 1000 replicates for ML and maximum parsimony methods* and the posterior probability values of the Bayesian analysis. The tree is rooted considering the Protoopalina sequences at the basal position according to the results obtained in the phylogenetic analysis of the SSU rDNA sequences. New sequences are noted in bold.
Figure 4 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Figure 4. Opalinata subtree showing the results of the TimeTree analysis inferred by applying the RelTime method to the SSU rDNA phylogenetic tree calculated by the maximum parsimony method. Three sets of calibrations including a total of seven time points were combined to obtain the TimeTree (set A* 'sequence evolution'* included three calibration points with uniform distributions; set B* 'host class constraints'* included two maximum time calibration points; and set C* 'host family constraints'* included two maximum time calibration points; see main text for further details); diamonds indicate calibration points included within the Opalinata subtree. Divergence time estimates and their 95% credibility intervals (magenta bars) are indicated in each node. Images showing the evolution of continents are from Scotese (2016).
Figure 3. A in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Figure 3. A* phylogenetic relationships of the SSU rDNA sequences of Opalinata by maximum likelihood (ML) method. The Salpingoeca infusorium AF100941 sequence was used as an outgroup. The number at the nodes represent* respectively* the bootstrap support as computed from 1000 replicates for ML and maximum parsimony methods* and the posterior probability values of the Bayesian analysis. Dashes (–) indicate a different tree topology. The tree is drawn to scale* with branch lengths measured in the number of substitutions per site. New sequences are noted in bold. B* phylogenetic relationships of the SSU rDNA sequences of Opalinata by Bayesian inference; only the subtree corresponding to Opalinata is presented* showing the differences in the branching pattern with respect to the trees obtained by ML and maximum parsimony methods. The numbers at the nodes represent posterior probability values; the probabilities for the nodes without numbers are given in Figure 3A.
Figure 2. Proposed general secondary structure model for the ITS1–5.8S rDNA–ITS2 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Figure 2. Proposed general secondary structure model for the ITS1–5.8S rDNA–ITS2–LSU rDNA of Opalinida* The expansion segments (ES#L) containing helices (in red) where there are important differences between genera are annotated. Colour code: yellow* ITS1 region; blue* 5.8S rRNA; magenta* ITS2 region; grey* LSU rRNA.
Figure 1 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Figure 1. Proposed general secondary structure model for the SSU rRNA of Opalinata (Proteromonadida and Opalinida). The expansion segments (ES#S) containing helices (in red) where there are important differences between genera are annotated.
FIGURE 24 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 24: Manus and pes of Baurusuchus albertoi. A, manus in dorsal view, with metacarpals; B, manus in lateral view; C, pes in dorsal view; D, pes in lateral view. Abbreviations: f, foramen; icd, M. interossei circular depression; mc, metacarpal; mt, metatarsal; ph, phalanx; ung, ungual phalanx. Scale bar = 1 cm.
FIGURE 23 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 23: Carpal region. A, pisiform of Baurusuchus albertoi in medial view; B, pisiform of Caiman crocodylus (MZSP 2063) in medial view; C, distal carpal of Baurusuchus albertoi in distal view; D, distal carpal of Baurusuchus albertoi in ventral view; E, reconstitution of the carpal area of B. albertoi in anterior view. Abbreviations: alr, anterior longitudinal ridge of radiale; cap, condylar area of pisiform; dc, distal carpal; p, pisiform; r, radiale; u, ulnare; uap, ulnare anterior projection. Arrows point in anterior direction. Scale bar = 1 cm.
FIGURE 22 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 22: Radiale (left) and ulnare (right) of Baurusuchus albertoi. Radiale: A, anterior view; B, lateral view; C, posterior view; D, medial view. Ulnare: E, anterior view; F, lateral view; G, posterior view; H, medial view. Abbreviations: alr, anterior longitudinal ridge; rca, radius contact area; uap, ulnare anterior projection; uca, ulna contact area. Scale bar = 1 cm.
FIGURE 28 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 28: Proximal tarsals of Baurusuchus albertoi, with the astragalus in anterodorsal view and the calcaneum in anteroventral view. Abbreviations: a, astragalus; ald, astragalus laterodorsal process; apl, astragalus peg-like projection; at, astragalus trochlea; c, calcaneum; cs, calcaneum socket; ct, calcaneum tuber; ctp, calcaneum tongue process; f, foramen associated to perforating artery; fdtc, fourth distal tarsal contact; mac, metatarsals-astragalus contact; tac, tibia-astragalus contact. Arrow points in lateral direction. Scale bar = 1 cm.
FIGURE 27 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 27: Right fibula of Baurusuchus albertoi in lateral view. Abbreviations: tif, "tuberositas" to M. iliofibularis insertion. Scale bar = 1 cm.
FIGURE 25 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 25: Right femur of Baurusuchus albertoi, from left to right, in posterior, lateral, anterior and medial views. Abbreviations: 4tr, fourth trocanther; cif, crest for M. ileo-femoralis attachment; cmc, cranium-medial crest; f, foramen; lc, lateral condyle; lt, largest trocanther; mc, medial condyle; sfmti, surface to M. femoro-tibialis internus attachment; spifi, surface to M. pubo-ischio-femoralis internus. Scale bar = 1 cm.
FIGURE 20 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 20: Right ulna of Baurusuchus albertoi in lateral view (left) and anterior view (right). Abbreviations: ale, anterolateral expansion; alr, anterolateral protuberance that contacts the radius; ti, triceps insertion area. Scale bar = 1 cm.
FIGURE 18 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 18: Right scapula of Baurusuchus albertoi in anterior view (left), left scapula in lateral view (middle) and right scapula in lateral view (right). Abbreviations: gs, glenoid surface; pc, posterior concavity; sc, shallow crest. Scale bar = 1 cm.
FIGURE 15 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 15: 11th caudal vertebra and chevron of Baurusuchus albertoi. A, 11th caudal vertebra in dorsal view; B, chevrons from 12th (left) and 15th (right) caudal vertebrae in anterior view. Abbreviations: ns, neural spine; poz, postzygapophysis; prz, prezygapophysis; tp, transverse process; tpt, transverse process thickness; vc, vertebral centrum.
FIGURE 16 in A New Species Of Baurusuchus (Crocodyliformes, Mesoeucrocodylia) From The Upper Cretaceous Of Brazil, With The First Complete Postcranial Skeleton Described For The Family Baurusuchidae
FIGURE 16: Ribs of Baurusuchus albertoi. From left do right above: left ribs from third and fourth vertebrae. From left to right below: left rib from eighth dorsal vertebrae, left rib from fifth dorsal vertebra, left rib from seventh dorsal vertebra, right rib from ninth dorsal vertebra, and left rib from tenth dorsal vertebra. Abbreviations: apcr, anterior process of cervical ribs; c, capitular area; t, tubercular area. Scale bar = 1 cm.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.