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1,773 results for “Supplementary data,”
Supplementary Data Chapter 4
<p>Supplementary Data for Chapter 4 of Julian Andres Paganini PhD Thesis</p>
Supplementary data and code for "Higher order theory of quasi-isodynamicity near the magnetic axis of stellarators"
<p>VMEC equilibria and plotting code for Figure 3 in "Higher order theory of quasi-isodynamicity near the magnetic axis of stellarators".</p>
Supplementary data for paper "RNA in situ conformation sequencing reveals novel long-range RNA interactions that impact splicing"
<p>Supplementary data for paper "RNA in situ conformation sequencing reveals novel long-range RNA structures with impact on splicing".</p> <p>Data showing support for PCCR (<a href="https://www.nature.com/articles/s41467-021-22549-7">paper</a>) in RIC-seq data (<a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE190214">archive</a>).</p> <p> </p> <p>S1: for each supported PCCR lists numbers of experiments with inner and outer support and number of supporting reads in each experiment</p> <p>S2: for select PCCR lists supporting and non-supporting cell lines, total number of supporting reads and mean PSI in each group, and difference in mean PSI between the groups</p>
Supplementary data as part of the article "Comparing the reaction profiles of single-iron catalytic sites in enzymes and in reticular frameworks for methane-to-methanol oxidation" (https://doi.org/10.1016/j.xcrp.2023.101422)
<p>Cartesian coordinates in the *.XYZ format for all the structures optimized at the M06-L/def2-TZVP in the reactivity study as part of the article "Comparing the reaction profiles of single-iron catalytic sites in enzymes and in reticular frameworks for methane-to-methanol oxidation" (<a href="https://doi.org/10.1016/j.xcrp.2023.101422">https://doi.org/10.1016/j.xcrp.2023.101422</a>)</p>
Supplementary data for "Seismogenic potential and tsunami threat of the strike-slip Carboneras fault in the western Mediterranean from physics-based earthquake simulations"
<p>Supplementary data for the article "Seismogenic potential and tsunami threat of the strike-slip Carboneras fault in the western Mediterranean from physics-based earthquake simulations" published in Natural Hazards and Earth System Science.</p>
Supplementary data to: Important Plant Areas of Cameroon.
<p>Supplementary data to Important Plant Areas of Cameroon.</p> <p>Includes:</p> <p>Species-site grid.</p> <p>Criterion B(ii) species list (national endemic and range-resticted species)</p> <p>Criterion B(ii) site totals</p> <p>Species-site area data</p> <p>Example specimen records for cited species at each site</p>
Supplementary Information and Raw Data for 'Low-dose 4D-STEM Tomography for Beam-Sensitive Nanocomposites'
<p>Supplementary information containing TEM data and analysis for the article </p> <p>"<strong>Low-dose 4D-STEM Tomography for Beam-Sensitive Nanocomposites</strong>"</p> <p>Link to paper: <a title="DOI URL" href="https://doi.org/10.1021/acsmaterialslett.3c01042">https://doi.org/10.1021/acsmaterialslett.3c01042</a></p> <p>The archive provides a documentation of the evaluation routine as a .pdf file and two scripts that are needed for evaluations. In addition, 4 folders are present after unzipping the archive, which contain</p> <ul> <li>the raw 4D-STEM datasets,</li> <li>vSTEM images,</li> <li>an example of the denoised vSTEM images,</li> <li>the denoised and aligned image stack, and the reconstructed volumes.</li> </ul> <p>If there are any questions/bugs, feel free to contact Milena Hugenschmidt (https://orcid.org/0000-0001-5020-9302).</p>
Supplementary table S1 - raw data - Schifani et al. J. Appl. Entomol.
<p>Raw data to "Schifani, E., Giannetti, D., Costi, E., Franconi, G., Campostrini, A., Maistrello, L., Grasso, D.A. Interactions between egg parasitoids and predatory ants for the biocontrol of the invasive brown marmorated stink bug Halyomorpha halys"; experiments described in the paper.</p>
The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19 - supplementary data
<p>Dataset in relation to </p> <p>Evans, Daniel, Cowen, Simon, Kammel, Martin, O'Sullivan, Denise M, Stewart, Graham, Grunert, Hans-Peter, Moran-Gilad, Jacob, Verwilt, Jasper, In, Jiwon, Vandesompele, Jo, Harris, Kathryn, Hong, Ki Ho, Storey, Nathaniel, Hingley-Wilson, Suzie, Dühring, Ulf, Bae, Young-Kyung, Foy, Carole A, Braybrook, Julian, Zeichhardt, Heinz, & Huggett, Jim F. (2021). The Dangers of Using Cq to Quantify Nucleic Acid in Biological Samples: A Lesson From COVID-19. Clinical Chemistry, 68(1), 153–162. https://doi.org/10.1093/clinchem/hvab219 </p>
Supplementary Materials and Raw Data for "Automated Test Suite Generation for Software Product Lines based on Quality-Diversity Optimisation"
<p>Supplementary Materials and Raw Data for "Automated Test Suite Generation for Software Product Lines based on Quality-Diversity Optimisation"</p> <p>1. OnlineSupplement.pdf------Online supplementary data for the paper</p> <p>2. RQ1-4.rar----Raw data for the paper</p> <p>3. Runtime to generate, optimise and execution test suites.xlsx -----Data used in Section 7 PRACTICAL IMPLICATIONS</p> <p>Source code of the algorithms used to produce these data can be found at GitHub https://github.com/gzhuxiangyi/SPLTestingMAP</p>
Supplementary material 2 from: Hubancheva A, Bozicevic V, Morinière J, Goerlitz HR (2023) DNA metabarcoding data from faecal samples of the lesser (Myotis blythii) and the greater (Myotis myotis) mouse-eared bats from Bulgaria. Metabarcoding and Metagenomics 7: e106844. https://doi.org/10.3897/mbmg.7.106844
Taxonomic relationships and relative abundance of prey and parasite species in faecal samples from M. myotis and M. blythii from Bulgaria
Supplementary data for "Engineering PD-1-targeted small protein variants for in vitro diagnostics and in vivo PET imaging"
<p>Supplementary data for "Engineering PD-1-targeted small protein variants for in vitro diagnostics and in vivo PET imaging". The docking.zip file contains ClusPro protein/protein docking results for all binding protein variants using either murine PD-1 structure (3bikB) or human PD-1 AF2 model as receptors. The pymol session contains data and scenes used to generate the Figures in the paper.</p>
Supplementary data for: A Silurian (Homerian) pelmatozoan echinoderm fauna from west-central Ohio
<p>A diverse echinoderm fauna lived in reef and non-reef Silurian facies of the upper Midwestern United States. However, these faunas are dominantly preserved in dolostones with fossils preserved only as molds and casts, and fossils from dolostone facies have not been documented to the extent of Silurian crinoids in non-dolostone strata. Herein, an echinoderm fauna is described from the dolostones of the Cedarville Member of the Laurel Limestone (Wenlock, Homerian) from the Pepcon Quarry in west-central Ohio. The described fauna contains blastoids, hemicosmitoids, and crinoids, including <em>Troosticrinus</em> <em>subcylindricus</em> (Hall and Whitfield, 1875); <em>Caryocrinites</em> sp.; an unidentifiable diplobathrid camerate, <em>Periechocrinus</em> <em>tennesseensis</em> (Hall and Whitfield, 1875); <em>Periechocrinus</em> <em>egani</em>? Miller, 1881; <em>Stiptocrinus</em> <em>farringtoni</em> (Slocom, 1908); <em>Calliocrinus</em> <em>primibrachialis</em> Busch, 1943; <em>Calliocrinus</em> <em>popplemani</em> n. sp.; <em>Calliocrinus</em> <em>hadros</em> n. sp.; and <em>Lecanocrinus</em> sp. Generic concepts for the Eucalyptocrinitidae are clarified; and, surprisingly, Eucalyptocrinites is absent from this fauna.</p>
Supplementary data
<p>This supporting information provides: (1) Analytical Methods for whole-rock major and trace element compositions, titanite BSE imaging and major element analysis, titanite trace element analysis; (2) Figures S1-S5 to show whole-rock geochemistry and titanite U-Pb dating, trace elements and Sm-Nd isotopes of the syn-exhumation granites; (3) Tables S1-S6 of whole-rock major and trace element compositions, titanite major-trace element compositions, U-Pb isotope compositions and Nd isotope compositions.</p>
Supplementary Data for Wueller et al. (2024): Geologic History of Deuteronilus Cavus in the Ismenius Lacus Region, Mars.
<p>Supplementary Data for Wueller et al. (2024): Geologic History of Deuteronilus Cavus in the Ismenius Lacus Region, Mars</p> <p>Data contains the georeferenced map plate of our geologic map that can be used in any geoinformation system (GIS).</p> <p><strong>If you use these data, please cite BOTH the Journal of Geophysical Research: Planets publication and the Zenodo dataset.</strong></p> <p>Wueller, L., Iqbal, W., Hiesinger, H., & Head III, J. W. (2024). Geologic History of Deuteronilus Cavus in the Ismenius Lacus Region, Mars. <em>Journal of Geophysical Research: Planets</em>, <em>129</em>(2), e2023JE008039. <a href="https://doi.org/10.1029/2023JE008039">https://doi.org/10.1029/2023JE008039</a></p> <p>Wueller, L., Iqbal, W., Hiesinger, H., & Head, J. (2023). Geologic History of Deuteronilus Cavus in the Ismenius Lacus Region, Mars. <em>Zenodo Dataset</em>. <a href="https://doi.org/10.5281/zenodo.8205276" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.8205276</a></p> <p>-----------------------------------------------------------------------------------------------------------------------------------------</p> <p>Mapping Scale is 1:200,000</p> <p>-----------------------------------------------------------------------------------------------------------------------------------------</p> <p>For further questions contact lwueller@uni-muenster.de</p> <p>Lukas Wueller, Institut für Planetologie, Universität Münster, Germany, January 2024</p>
Supplementary data: Integrated use of consortia-based microbial inoculants and nutrient complex stimulates the rhizosphere microbiome and soybean productivity
<p>The data represent the impact of microbial consortia consisting of different combinations of <em>Bradyrhizobium japonicum</em>, <em>Bacillus megaterium</em>, <em>Bacillus subtilis</em>, and <em>Azotobacter chroococcum</em> with or without nutrient complex (S, Mg, Mn, Fe, Zn, Cu, B, and Mo) on the abundance and activity of microorganisms in the rhizosphere, soybean growth and development, as well as the quantity and quality of seed yield under field conditions.</p> <p>A field experiment was performed to evaluate the responses of the rhizomicrobiome and soybean to seed treatments with multiple bacterial strains (<em>Bradyrhizobium japonicum</em>, <em>Bacillus subtilis</em>, <em>Bacillus megaterium</em>, and <em>Azotobacter chroococcum</em>), applied individually or in consortia, with and without nutrient complex (S, Mg, Mn, Fe, Zn, Cu, B, and Mo). Seed treatments with microbial consortia of <em>Br. japonicum</em>, <em>B. subtilis</em>/<em>B. megaterium</em>, <em>A. chroococcum</em> strains and nutrients had the highest effect on the abundance of total bacteria, azotobacters, nitrogen-fixing bacteria, actinomycetes, and activity of dehidrogenase in soybean rhizosphere. The highest effect on plant height, plant weight, pod number, pod weight, seed number, and seed weight was obtained from treatment with <em>Br. japonicum</em> strains with nutrients, followed by co-inoculation with <em>B. megaterium</em> and <em>A. chroococcum</em>. In comparison with the control and <em>Bradyrhizobium</em> single inoculation, a statistically significant increase in the seed yield was recorded in treatment with <em>Br. japonicum</em>, <em>B. megaterium</em>, <em>A. chroococcum,</em> and nutrients, reflecting the highest increase in protein and oil yield. The interactive effects of microbial consortia and nutrients could be used as promising seed technology for sustainable soybean cropping.</p>
Supplementary data Guo et al. Brachiopod-bivalve switch
<p>Supplementary Data and Code of Guo et al. (2023, Nature Communications)</p> <p>The file 'Datasets and results' includes:</p> <p>1. URLs used to download the PBDB data. 2. Fossil occurrence data downloaded from PBDB. 3. Added Permian-Jurassic occurrences and the reference list. 3. Revised fossil occurrence data. 4. Estimated diversification dynamics, diversities and MBD results.</p> <p>The file 'R and Bash scripts' includes:</p> <p>1. Functions and R scripts used to process the dataset and plot the results. 2. Bash scripts used to analyse the PyRate files. PyRate files are not provided because of their large size. They can be generated by the R scripts and datasets provided.</p>
Champion-Level Drone Racing using Deep Reinforcement Learning: Supplementary Data
<p>Supplementary data for the publication "Champion-Level Drone Racing using Deep Reinforcement Learning".</p> <p>racing_data.zip: The data includes the recorded position of human and autonomous drones during head-to-head races and time-trial runs. The included code provides plotting and statistical analysis of the data.</p> <p>pseudocode.zip: Pseudocode that illustrates gate detection, VIO drift estimation, policy training, and residual model identification.</p>
Supplementary data - Biochar and its potential to deliver negative emissions and better soil quality in Europe
<p>Additional data from </p> <p>- Matlab script of the logistic transport model for the transportation of forest and crop residues to biochar production plants</p> <p>- Gridded data from the maps in the publication and its supplementary information as geotiff, projection system "ETRS89-extended / LAEA Europe"</p>
Supplementary Data for: "Molecular basis for bacterial N-glycosylation by a soluble HMW1C-like N-glycosyltransferase"
<p>This data set contains files related to the article "<strong>Molecular basis for bacterial <em>N</em>-glycosylation by a soluble HMW1C-like <em>N</em>-glycosyltransferase</strong>" by Beatriz Piniello, Javier Macías-León, Shun Miyazaki, Ana García-García, Ismael Compañón, Mattia Ghirardello, Víctor Taleb, Billy Veloz, Francisco Corzana, Atsushi Miyagawa, Carme Rovira and Ramón Hurtado-Guerrero.</p> <p>Description of the files:</p> <p><strong>Simulation data:</strong></p> <p>- <strong>classical_md_simulations.zip: </strong>includes the inputs and initial and final structures of the classical MD simulation of AaNGT in complex with UDP-Glc and peptide, for both Asn3 in amide and imidic acid form.</p> <p>- <strong>qmmm_simulations.zip</strong>: includes the inputs for equilibration and metadynamics, and the initial structure extracted from the classical MD. Other relevant structures included in the directories of the pertinent figures (see below). Also includes plots of the CVs for each of the metadynamics.</p> <p><strong>Data related to the figures in the manuscript (data from the plots is in the Source Data file included with the manuscript):</strong></p> <p><strong>- Figure_4.zip: </strong>PDB file of the structure shown.</p> <p>- <strong>Figure_5.zip</strong>: PDB files of the structures shown (MC, TS and P, (already uploaded in v1) and FES file.</p> <p>- <strong>Figure_S6.zip: </strong>PDB files of the structures shown (MC, TS and P).</p> <p>- <strong>Figure_S7.zip: </strong>PDB files of the structures shown (MC, TS and P) for both simulations, and their respective FES files.</p> <p>- <strong>Figure_S9.zip</strong>: PDB file of the structure shown (computational only). It is the same as the structure shown in <strong>Figure 8</strong>.</p> <p>- <strong>Figure_S11.zip</strong>: PDB file of the structure shown.</p> <p>- <strong>Table_S3.zip: </strong>Excel file with the data to obtain the table. TS is given as a single structure in the table and thus not included in the file.</p> <p> </p> <p>More data can be made available upon reasonable request.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.