Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
139
datasets available to search
ShareScore release 0.9.0
Dataset results
139 results for “reconcilation”
FIG. 2 in Phylogeny Reconciles Classification in Antarctic Plunderfishes
FIG. 2. Phylogenetic relationships of Artedidraconinae based on maximum likelihood analyses of concatenated ddRAD datasets using IQ-TREE. Bootstrap support values for nodes less than 100% are shown. (A) Phylogeny resulting from analysis of the dataset that includes 64,980 ddRAD loci. The DNA sequence alignments include data for at least 84 of the 168 sampled specimens (min84). The sectors of the Southern Ocean where specimens were collected are indicated with colored circles at the tips of the phylogeny. (B) Phylogeny resulting from analysis of the dataset that includes 19,042 ddRAD loci. The DNA sequence alignments include data for at least 126 of the 168 sampled specimens (min126). (C) Phylogeny resulting from analysis of the dataset that includes 1,331 ddRAD loci. The DNA sequence alignments include data for at least 144 of the 168 sampled specimens (min144). See Data Accessibility for tree file.
FIG. 1 in Phylogeny Reconciles Classification in Antarctic Plunderfishes
FIG. 1. Neodraco skottsbergi from the South Orkney Islands (–61.213304, –45.935358), 7.1 cm standard length. YPM ICH 022463.
FIG. 3 in Phylogeny Reconciles Classification in Antarctic Plunderfishes
FIG. 3. Phylogenetic relationships of Artedidraconinae based on multispecies coalescent analyses of SNPs extracted from ddRAD datasets using tetrad. Bootstrap support values for nodes less than 100% are shown. (A) Phylogeny resulting from analysis of the dataset that includes 64,980 ddRAD loci. The DNA sequence alignments include data for at least 84 of the 168 sampled specimens (min84). The sectors of the Southern Ocean where specimens were collected are indicated with colored circles at the tips of the phylogeny. (B) Phylogeny resulting from analysis of the dataset that includes 19,042 ddRAD loci. The DNA sequence alignments include data for at least 126 of the 168 sampled specimens (min126). (C) Phylogeny resulting from analysis of the dataset that includes 1,331 ddRAD loci. The DNA sequence alignments include data for at least 144 of the 168 sampled specimens (min144). See Data Accessibility for tree file.
Fig. 3 in Research Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
Fig. 3 Ages of extant genera and fossil placements. (a) Phylogenetic relationships for extant (genera are collapsed) and extinct cycads with support values (Posterior Probability indicated when> 0.3). Node support for extant genera is only indicated when <1. (b) Posterior distributions for the crown ages of the extant genera. Eo, Eocene; M, Miocene; N, Neogene; O, Oligocene; Pg, Paleogene. Ma, million years ago.
Fig. 2 in Research Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
Fig. 2 Bayesian total-evidence dated phylogeny of Cycadales. This chronogram is the resulting consensus tree from the MrBayes analyses performed with the fossilized-birth-death model and an uncorrelated relaxed molecular clock. The tree includes 321 extant species and 60 extinct species with median divergence times along with 95% Highest Posterior Density (blue bars) for each node. C, Carboniferous; J, Jurassic; K, Cretaceous; N, Neogene; P, Permian; Pg, Paleogene; T, Triassic.
Fig. 4 in Research Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
Fig. 4 Historical biogeography of cycads. Estimates of ancestral areas were performed with a time-stratified model in Dispersal–Extinction–Cladogenesis (DEC) with fossils included (a) and with fossils excluded (b). The extant genera have been collapsed to focus on deep-time biogeography (for details within each genus, see Supporting Information Fig. S6 when fossils are included and Fig. S7 when fossils are excluded). The bottom-right corner legend indicates colored areas used in this study corresponding to colored squares for each node, representing inferred ancestral area(s) with the DEC model, and colored circles for fossil species representing known distributions (except for extant genera with one or two species only). The red-highlighted shades show the cycad expansion into Gondwana during the Jurassic and Cretaceous. The bottom-left corner map represents the global paleogeography in the Jurassic (180 million years ago (Ma)). Paleomap used with permission © 2020 Colorado Plateau Geosystems Inc. Arrows indicate fossil species illustrated. Pictures from Mario Coiro. C, Carboniferous; N, Neogene; Perm, Permian; Pg, Paleogene.
Fig. 1 in Research Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
Fig. 1 Global distribution of Cycadales. (a) Species richness of the 10 extant cycad genera across continents. (b) IUCN threat categories for 337 extant cycad species (redrawn from IUCN, 2022). (c) Map showing the extant distribution of cycad diversity (red areas) and sampled fossil localities (purple dots), indicating broader geographic distribution in the past.
Fig. 6 in Research Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
Fig. 6 Reconstruction of the latitudinal span of cycads during geological times. This estimate has been obtained using the method of Silvestro et al. (2018b) as implemented in Zhang et al. (2022). Gray polygon represents the reconstructed span, black dots represent the paleolatitude and age of fossil tips, while black triangles show the latitude of extant species. C, Carboniferous; J, Jurassic; K, Cretaceous; N, Neogene; P, Permian; Pg, Paleogene; Tr, Triassic.
Fig. 5 in Research Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
Fig. 5 Biogeographic processes explaining the global distribution pattern of cycads. The number of dispersal events into a region and out of a region as well as the number of local extinctions (extirpations) are compared between analyses including fossils (a, b) and analyses excluding fossils (c, d). Area names: WP, West Palearctic; EP, East Palearctic; WN, West Nearctic; EN, East Nearctic; CA, Central America; WI, Caribbean Islands; SA, South America; AF, Africa; IN, India; WA, Southeast Asia; AU, Australasia; GR, Greenland; AN, Antarctica.
Correlated and geographically predictable Neanderthal and Denisovan legacies are difficult to reconcile with a simple model based on inter-breeding
Open the record for dataset details and reuse information.
Data from: Reconciling molecular phylogeny, morphological divergence and classification of Madagascan narrow-mouthed frogs (Amphibia: Microhylidae)
Open the record for dataset details and reuse information.
Data from: Phylogeny reconciles classification in Antarctic plunderfishes
Open the record for dataset details and reuse information.
Data from: Reconciling timber extraction with biodiversity conservation in tropical forests using reduced-impact logging
Open the record for dataset details and reuse information.
Root anatomy helps to reconcile observed root trait syndromes in tropical tree species
Open the record for dataset details and reuse information.
Data from: The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
Open the record for dataset details and reuse information.
Data from: Reconciling nutritional geometry with classical dietary restriction: effects of nutrient intake, not calories, on survival and reproduction
Open the record for dataset details and reuse information.
Reconciling seascape genetics and fisheries science in three co-distributed flatfishes
Open the record for dataset details and reuse information.
Data from: Reconciling extremely strong barriers with high levels of gene exchange in annual sunflowers
Open the record for dataset details and reuse information.
Data from: Major radiations in the evolution of caviid rodents: reconciling fossils, ghost lineages, and relaxed molecular clocks
Open the record for dataset details and reuse information.
GEOS-Chem output for "Lightning NOx Emissions: Reconciling measured and modeled emissions estimates with updated NOx chemistry"
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.