Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
4,144
datasets available to search
ShareScore release 0.9.0
Dataset results
4,144 results for “ITS barcode”
Figure 5. Consensus tree obtained from a 640 in Taxonomy and molecular phylogeny of the Neotropical genus Atlantoscia (Oniscidea, Philosciidae): DNA barcoding and description of two new species
Figure 5. Consensus tree obtained from a 640-bp alignment of cytochrome c oxidase subunit I gene sequences of the Atlantoscia species by using Bayesian inference. Numbers at nodes represent posterior probabilities values (1 000 000 generations). Clades highlighted by grey shading in the tree correspond to nominal species of Atlantoscia. Letters (a–k) represent the different individuals of terrestrial isopods analysed.
Figure 2 in Taxonomy and molecular phylogeny of the Neotropical genus Atlantoscia (Oniscidea, Philosciidae): DNA barcoding and description of two new species
Figure 2. Atlantoscia inflata sp. nov., male paratype MZUSP 32623. A, pereopod 1; B, pereopod 7; C, uropod; D, genital papilla; E, pleopod 1; F, pleopod 2; G, pleopod 3 exopod; H, pleopod 4 exopod; I, pleopod 5 exopod.
Fig. 2 in Use of Morphology and CO1 Barcoding to Test the Validity ofTetraopes huetheriSkillman (Coleoptera: Cerambycidae)
Fig. 2. Neighbor-Joining tree of 22 Tetraopes specimens and data from Farrell (2001). Scale indicates 1% difference.
NextClone and CloneDetective: An Integrated Nextflow Pipeline and R Package for Clonal Barcode Extraction and Quantification
<p>BAM file (chunk 26-50 of 50) for the scRNAseq data required to replicate the analyses presented at: https://phipsonlab.github.io/NextClone-analysis/.</p><p>Chunk 1-25 can be downloaded from https://zenodo.org/records/10129134.</p><p>The original BAM file was too big to fit in an entry. Thus it was split into 50 using picard:</p><blockquote><p>SplitSamByNumberOfReads -I possorted_genome_bam.bam -O split_sam/ -N_FILES 50 <i>--CREATE_MD5_FILE</i></p></blockquote><p>Before re-running all the analyses in https://phipsonlab.github.io/NextClone-analysis/, make sure you merge all 50 chunks first using picard (change xxx to point to the directory storing all the 50 chunks you have downloaded):</p><blockquote><p>outdir="xxx"</p><p>args=""</p><p><i># Loop through each BAM file</i></p><p>for file in ${outdir}/*.bam; do</p><p> args+="-I $file "</p><p>done</p><p># Do the actual merging</p><p>MergeSamFiles $args -O $outdir/merged_v2/merged_bam_v2.bam --USE_THREADING --CREATE_MD5_FILE</p></blockquote><p>Picard can be downloaded from: https://github.com/broadinstitute/picard</p>
FIGURE 6 in Eucosma subvittana (Staudinger 1892) stat. rev., a Mediterranean species resurrected by DNA barcodes and morphology (Lepidoptera, Tortricidae)
FIGURE 6. Forewing of Eucosma subvittana ♂. A. Elements of the wing pattern. B. Venation. The subcostal vein is located in the area of the costal fold and is not visible in the photograph. Legend: (3–9) pairs of costal strigulae; (cf) costal fold; (ifs) interfascial spot; (mf) median fascia; (mif) median interfascia; (oc) ocellus; (pmf) postmedian fascia; (pmif) postmedian interfascia; (pt) pre-terminal fascia; (ptif) pre-terminal interfascia; (sbf) sub-basal fascia; (sbif) sub-basal interfascia.
NextClone and CloneDetective: An Integrated Nextflow Pipeline and R Package for Clonal Barcode Extraction and Quantification
<p>BAM file (chunk 1-25 of 50) for the scRNAseq data required to replicate the analyses presented at: https://phipsonlab.github.io/NextClone-analysis/.</p><p>Chunk 26-50 can be downloaded from https://zenodo.org/uploads/10129625</p><p>The original BAM file was too big to fit in an entry. Thus it was split into 50 using picard:</p><blockquote><p>SplitSamByNumberOfReads -I possorted_genome_bam.bam -O split_sam/ -N_FILES 50 <i>--CREATE_MD5_FILE</i></p></blockquote><p>Before re-running all the analyses in https://phipsonlab.github.io/NextClone-analysis/, make sure you merge all 50 chunks first using picard (change xxx to point to the directory storing all the 50 chunks you have downloaded):</p><blockquote><p>outdir="xxx"</p><p>args=""</p><p><i># Loop through each BAM file</i></p><p>for file in ${outdir}/*.bam; do</p><p> args+="-I $file "</p><p>done</p><p># Do the actual merging</p><p>MergeSamFiles $args -O $outdir/merged_v2/merged_bam_v2.bam --USE_THREADING --CREATE_MD5_FILE</p></blockquote><p>Picard can be downloaded from: https://github.com/broadinstitute/picard</p>
FIGURE 4. Sternite 7 in Eucosma subvittana (Staudinger 1892) stat. rev., a Mediterranean species resurrected by DNA barcodes and morphology (Lepidoptera, Tortricidae)
FIGURE 4. Sternite 7 and sterigma, diagnostic characters of E. subvittana and E. cana. A. E. subvittana, Crete, Agia Galini, 25.iv.2022. B. E. cana, Bulgaria, Sredna Gora Mts, 720 m, 28.vii.2012. Note the different ratio length/width of sternite 7 and lateral incisions of sterigma (arrows). Scale bar 500 μm, both to scale.
FIGURE 3 in Eucosma subvittana (Staudinger 1892) stat. rev., a Mediterranean species resurrected by DNA barcodes and morphology (Lepidoptera, Tortricidae)
FIGURE 3. Eucosma subvittana (A–C) and E. cana (D–H), female genitalia. A. subvittana, Crete, Agia Galini, 25.iv.2022. B. E. subvittana, Crete, Georgioupoli, 4.v.2022. C. E. subvittana, Crete, Agia Galini, 25.iv.2022. D. E. cana, Bulgaria, Sredna Gora Mts, 720 m, 28.vii.2012. E. E. cana, Bulgaria, Shumen distr., 20.vi.2007. F. E. cana, Bulgaria, Petrich distr., 14.vi.2010. G. E. cana, Bulgaria, Emen Gorge, 16.vii.2011. H. E. cana, Bulgaria, Belasitsa Mts, 600 m, 28.viii.2010. Scale bar 500 μm, all to scale.
FIGURE 2 in Eucosma subvittana (Staudinger 1892) stat. rev., a Mediterranean species resurrected by DNA barcodes and morphology (Lepidoptera, Tortricidae)
FIGURE 2. Eucosma subvittana (A–G) and E. cana (H–R), male genitalia. A. E. subvittana, Crete, Agia Galini, 25.iv.2022. B. E. subvittana, ibid. C. subvittana, ibid. D. E. subvittana, Crete, Georgioupoli, 4.v.2022. E. E. subvittana ibid. F. subvittana, ibid. G. E. subvittana, ibid. H. E. cana, Bulgaria, Balchik, 27.vi.2013. I. E. cana, Bulgaria, Petrich distr., 5.v.2013. J. E. cana, Bulgaria, Slavyanka Mts, 1550 m, 23.vii.2010. K. E. cana, Bulgaria, Yambol reg., 29.vi.2012. L. E. cana, Bulgaria, Belasitsa Mts, 1500 m, 6.vii.2010. M. E. cana, Turkey, Iğneada, 6.vii.2009. N. E. cana, Bulgaria, Black Sea coast, Karadere, 4.vii.2013. O. E. cana, Bulgaria, Pirin Mts, 1850 m, 8.viii.2013. P. E. cana, Bulgaria, Black Sea coast, Veleka, 6.vii.2013. Q. E. cana, Bulgaria, Pirin Mts, 1950 m, 21.vii.2010. R. E. cana, Bulgaria, Black Sea coast, Kranevo, 23.vii.2011. Scale bar 500 μm, all to scale.
FIGURE 1. Eucosma subvittana and E. cana. A in Eucosma subvittana (Staudinger 1892) stat. rev., a Mediterranean species resurrected by DNA barcodes and morphology (Lepidoptera, Tortricidae)
FIGURE 1. Eucosma subvittana and E. cana. A. Lectotype ♂of E. subvittana, Tunisia. B–I Wing pattern. B. E. subvittana lectotype. C. E. subvittana paralectotype ♂, Spain, Barcelona (left wings mirrored digitally). D. E. subvittana paralectotype ♀, Italy, Sardinia. E. E. subvittana ♀, Crete, Agia Galini, 25.iv.2022. F. E. subvittana ♀, ibid. G. E. subvittana ♂, ibid. H. E. subvittana ♂, Crete, Georgioupoli, 4.v.2022. I. E. cana ♂, Bulgaria, Pirin Mts, 1730 m, 17.vii.2010. J. E. cana ♀, Bulgaria, Sredna Gora Mts, 720 m, 28.vii.2012. K. E. cana ♂, Bulgaria, Black Sea coast, 6.vi.2013. L. E. cana ♂, Bulgaria, Yambol reg., 29.vi.2012. Scale bars 5 mm, B–L to scale; A–D (c) Museum für Naturkunde Berlin, with permission.
Fig. 9 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 9. Light micrographs of cuticles from paratypes and hologenophores mounted after DNA extraction and COI sequencing. (A–B) Echinoderes horni, NHMD- 1176472, GenBank Acc. No. OP617666. (C–D) Echinoderes wilberti sp. nov., NHMD- 1176460, GenBank Acc. No. OP617672. (A) Dorsal overview. (B) Segments 1 to 6, dorsal view. (C) Dorsal overview. (D) Segments 1 to 6, dorsal view. Arrows indicate subdorsal tubes on segment 2.
Fig. 3 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 3. Diagram of mouth cone (grey area), introvert and placids in Echinoderes abeli sp. nov., outer oral styles (diamonds), primary scalids (triangles), spinoscalids (open circles), and trichoscalids (stars), with positions of trichoscalid plates and placids indicated. Table shows the scalid arrangement by sector; single-lined boxes mark quincunxes, double-lined boxes mark "double diamonds", question mark indicates unknown information.
Fig. 1 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 1. Maps showing (A) the position of areas of study in Mexico (B) sampling stations at Islas Marias with asterisks marking St. 8 y St.12, and (C) sampling stations in Quintana Roo with inset showing zoom of stations in Xcalak.
Fig. 6 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 6. Line art illustrations of Echinoderes wilberti sp. nov. (A) Female, dorsal view. (B) Female, ventral view. (C) Segments 10 to 11 in male, dorsal view. (D) Segments 10 to 11 in male, ventral view. Abbreviations: lat, lateral accessory tube; ldss, laterodorsal sensory spot; ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvgco1, lateroventral glandular cell outlet type 1; lvs, lateroventral spine; lvt, lateroventral tube; mdgco1, middorsal glandular cell outlet type 1; mlss, midlateral sensory spot; pdgco1, paradorsal glandular cell outlet type 1; pe, penile spines; pvb, paraventral bristles; sdss, subdorsal sensory spot; sdt, subdorsal tube; vlss, ventrolateral sensory spot; vmgco1, ventromedial glandular cell outlet type 1; vmss, ventromedial sensory spot.
Fig. 5 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 5. Scanning electron micrographs showing overviews and details of Echinoderes abeli sp. nov. (A) Dorsal overview. (B) Ventral overview. (C) Mouth cone, dorsal view. (D) Introvert sector 2 (paraventral). (E) Segments 1 to 2, dorsal view. (F) Segment 1 to 2, ventral view. (G) Segments 7 to 8, lateral view. (H) Segments 2 to 4, lateral view; inset shows close-up of glandular cell outlet type 2. (I) Segments 10 to 11, dorsal view, showing female sexual dimorphism. (J) Segments 10 to 11, ventral view, showing female sexual dimorphism. (K) Segments 10 to 11, laterodorsal view, showing female sexual dimorphism; inset shows close-up of laterodorsal tube. Abbreviations: ldss, laterodorsal sensory spot; ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvt, lateroventral tube; mdss, middorsal sensory spot; mlt, midlateral tube; oos, outer oral styles; pdss, paradorsal sensory spot; pr, protuberance; psp, primary spinoscalid; sdgco2, subdorsal glandular cell outlet type 2; sdss, subdorsal ss; slt, sublateral tube; sp, spinoscalid followed by introvert ring number; tr, trichoscalid; vlss, ventrolateral sensory spot; vmss, ventromedial sensory spot. Digit after abbreviation in lvt refer to segment number.
Fig. 10 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 10. Line art illustrations of Echinoderes horni Higgins, 1983. (A) Female, dorsal view. (B) Female, ventral view. (C) Segments 10 to 11 in male, dorsal view. (D) Segments 10 to 11 in male, ventral view. Abbreviations: lat, lateral accessory tube; ldss, laterodorsal sensory spot; ldt, laterodorsal tube; ltas, lateral terminal accessory spine; lts, lateral terminal spine; lvgco1, lateroventral glandular cell outlet type 1; lvs, lateroventral spine; lvt, lateroventral tube; mdgco1, middorsal glandular cell outlet type 1; mlss, midlateral sensory spot; pdgco1, paradorsal glandular cell outlet type 1; pe, penile spines; pvb, paraventral bristles; sdss, subdorsal sensory spot; vlss, ventrolateral sensory spot; vmgco1, ventromedial glandular cell outlet type 1; vmss, ventromedial sensory spot.
Fig. 12 in New Echinoderes (Kinorhyncha: Cyclorhagida) from Mexico: Molecular barcoding demonstrate species delimitation between highly similar morphospecies
Fig. 12. Confocal laser micrographs of Echinoderes horni (NHMD-1176472) showing focal overview sections, from most dorsal in (A) and a deeper focus through (B) to (C). Sensory spots are indicated by full circles, and glandular cell outlets type 1 by dashed circles.
FIGURE 188. A in A turbo-taxonomic study of Thai Aleiodes (Aleiodes) and Aleiodes (Arcaleiodes) (Hymenoptera: Braconidae: Rogadinae) based largely on COI barcoded specimens, with rapid descriptions of 179 new species
FIGURE 188. A. vietuput sp. nov. A, habitus; B, face; C, mesosoma, lateral view; D, head and mesosoma, dorsal view; E, wings; F, metasoma.
FIGURE 182. A in A turbo-taxonomic study of Thai Aleiodes (Aleiodes) and Aleiodes (Arcaleiodes) (Hymenoptera: Braconidae: Rogadinae) based largely on COI barcoded specimens, with rapid descriptions of 179 new species
FIGURE 182. A. tulipus sp. nov. A, habitus; B, head, dorsal view; C, head and pronotum, lateral view; D, mesosoma, dorsal view; E, mesosoma, lateral view; F, metasoma.
FIGURE 192 in A turbo-taxonomic study of Thai Aleiodes (Aleiodes) and Aleiodes (Arcaleiodes) (Hymenoptera: Braconidae: Rogadinae) based largely on COI barcoded specimens, with rapid descriptions of 179 new species
FIGURE 192. Aleiodes (Arcaleiodes) siamensis sp. nov. A, habitus; B, face; C, head and pronotum, lateral view; D, head and anterior mesosoma, dorsal view; E, propodeum and 1st metasomal tergite, dorsal view; F, metasoma.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.