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Figure 5 in Phylogenetic biome conservatism as a key concept for an integrative understanding of evolutionary history: Galliformes and Falconiformes as study cases
Figure 5. Ancestral biome reconstruction for Falconiformes. Coloured circles represent the ten different biomes implemented in the model (Walter, 1970; Hernández Fernández, 2001); those at the nodes represent the inferred ancestral biome(s); those at the tips correspond to the recent biome distribution of species. Along the time scale, geological and climatic histories are shown, in addition to intercontinental biotic interchanges. Abbreviations: Af, Africa; Au, Australia; EAs, Eurasia; LB, land bridge; NA, North America; SA, South America.
Figure 6 in Phylogenetic biome conservatism as a key concept for an integrative understanding of evolutionary history: Galliformes and Falconiformes as study cases
Figure 6. Colonization dynamics of Falconiformes. Each graph represents the rate of colonization by new lineages for each biome throughout the Cenozoic.
Figure 4 in Phylogenetic biome conservatism as a key concept for an integrative understanding of evolutionary history: Galliformes and Falconiformes as study cases
Figure 4. Biome transitions in Galliformes. The number of recent species is indicated inside the circles. Arrow thickness is proportional to the number of colonizations. The dashed lines indicate only one colonization event. The number of transitions that did not imply colonization (niche conservatism) is indicated as different areas of the circles, classified in five categories. For more details about absolute scores, see Table 2.
Figure 2 in Phylogenetic biome conservatism as a key concept for an integrative understanding of evolutionary history: Galliformes and Falconiformes as study cases
Figure 2. Ancestral biome reconstruction for Galliformes. Coloured circles represent the ten different biomes implemented in the model (Walter, 1970; Hernández Fernández, 2001); those at the nodes represent the inferred ancestral biome(s) occupancy; those at the tips correspond to the recent biome distribution of species. Along the time scale, geological and climatic histories are shown, in addition to intercontinental biotic interchanges. Abbreviations: Af, Africa; Au, Australia; EAs, Eurasia; LB, land bridge; NA, North America; SA, South America.
Figure 3 in Phylogenetic biome conservatism as a key concept for an integrative understanding of evolutionary history: Galliformes and Falconiformes as study cases
Figure 3. Colonization dynamics of Galliformes. Each graph represents the rate of colonization by new lineages for each biome throughout the Cenozoic.
Figure 1 in Phylogenetic biome conservatism as a key concept for an integrative understanding of evolutionary history: Galliformes and Falconiformes as study cases
Figure 1. Schematic explanatory example for transition categories considered in this study: transition with biome conservatism; transition with colonization; and transition with loss of ancestral biome occupation. Note that ancestral biome occupation (for node A) is the same above and below, whereas biome occupations for derived nodes B (above) and C (below) differ.
Basaloid Squamous Cell Carcinoma: A Case Report
<p><strong>Background:</strong> The upper aerodigestive tract is where BSCC (basaloid squamous cell carcinoma), a rare variation of conventional SCC, is most frequently found. The hypopharynx, tonsil, supraglottic larynx, tongue (base), and head-neck regions are particularly susceptible to BSCC. Clinically, the presentation of BSCC is similar to that of conventional SCC, but it has a poor prognosis than traditional SCC. BSCC is distinguished histopathologically by a dimorphic-pattern, a distinctive basal cell component paired with a squamous component, and a squamous component. Compared to traditional SCC, the prognosis for BSCC is worse. However, clinically it shows similar features like conventional SCC which makes it difficult to diagnose. Therefore, histopathology and immunohistochemistry have a crucial role in diagnosing such tumors. We here present a case of a seventy-year male diagnosed with BSCC involving the tongue.</p> <p><strong>Keywords</strong>: Basaloid squamous cell carcinoma, dimorphic pattern, basaloid cells, comedo necrosis.</p>
Figure 4 in Characterizing Environmental Change and Species' Histories from Stratified Faunal Records in Southeastern Australia: A Regional Review and a Case Study for the Early to Middle Holocene
Figure 4. Selected species representations at WJ99. Species are sorted by those that show decline into the Holocene (blue), those whose values generally do not show particular decline or increase during the Holocene Climatic Optimum (gold), and those whose numbers appear to be affected—decline or increase—during the Holocene Climatic Optimum (red). Grey shading indicates approximate timing of peak Holocene Climatic Optimum conditions.
Figure 1 in Characterizing Environmental Change and Species' Histories from Stratified Faunal Records in Southeastern Australia: A Regional Review and a Case Study for the Early to Middle Holocene
Figure 1. Map of SE Australian Alps and region, indicating locations of sites with faunal material mentioned in text.
Figure 3 in Characterizing Environmental Change and Species' Histories from Stratified Faunal Records in Southeastern Australia: A Regional Review and a Case Study for the Early to Middle Holocene
Figure 3. Summary of known environmental shifts during the early to middle Holocene from SE Australia, chronologically related to notable temporal changes within (and environmental inferences from) the faunal composition of WJ99. * Approximate calibrated date ranges inferred from original uncalibrated dates.
Figure 2 in Characterizing Environmental Change and Species' Histories from Stratified Faunal Records in Southeastern Australia: A Regional Review and a Case Study for the Early to Middle Holocene
Figure 2. Representative (east and south) sections of WJ99 Square 10B, showing locations of AMS radio-
Data from "Higher mortality is not a universal cost of dispersal: A case study in African wild dogs"
<p>Mortality is considered one of the main costs of dispersal. A reliable evaluation of mortality, however, is often hindered by a lack of information about the fate of individuals that disappear under unexplained circumstances (i.e. missing individuals). Here, we addressed this uncertainty by applying a Bayesian mortality analysis that inferred the fate of missing individuals based on information from individuals with known fate. Specifically, we tested the hypothesis that mortality during dispersal is higher than mortality among non-disperser using 32 years of mark-resighting data from a free-ranging population of the endangered African wild dog (<em>Lycaon pictus</em>) in northern Botswana. Contrary to expectations, we found that mortality during dispersal was lower than mortality among non-dispersers, indicating that higher mortality is not a universal cost of dispersal. Our findings suggest group living can incur costs for certain age classes, such as limited access to resources as group density increases, that exceed the mortality costs associated with dispersal. By challenging the accepted expectation of higher mortality during dispersal, we urge for further investigations of this key life-history trait, and propose a robust statistical approach to reduce bias in mortality estimates.</p>
Input data for the case study reported in "DREAM: an R package for druggability evaluation of human complex diseases".
<p>The data included in this record constituted the input for the case study reported in the manuscript "DREAM: an R package for druggability evaluation of human complex diseases", by Antonio Federico, Michele Fratello, Alisa Pavel, Lena Möbus, Giusy del Giudice, Angela Serra, Dario Greco. The data derive from transcriptomics experiments executed on lesional skin from atopic dermatitis patients and unaffected skin counterparts. The data consists of two files in ".txt" format reporting gene expression data in tabular format, where on the rows are reported genes and on the columns are reported samples. The data is an aggregated and batch-corrected collection of datasets originally downloaded by Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/). The file "GE_Mic_AD_Pamr_MAARS.txt" reports gene expression estimates of lesional skin of atopic dermatitis patients, while the file "GE_Mic_AD_Pamr_nl_MAARS.txt" reports gene expression estimates of non-lesional skin of atopic dermatitis patients.</p>
Spatio-temporal Dynamics of Coworking Spaces Development: The Case of Selected Central European Capitals
<p>The dataset provides geolocation coordinates and years of activity of coworking spaces in the selected Central European capitals - Bratislava, Budapest, Prague, and Warsaw.</p>
Rural Landscape Simplification and Provision of Cultural Ecosystem Services. A Case Study in the Argentine Pampas
<p>This supplementary material consists of the <strong>survey questionnaire</strong> and the <strong>data set </strong>that gave rise to the article: <em>Rural Landscape Simplification and Provision of Cultural Ecosystem Services. A Case Study in the Argentine Pampas </em>publicado en el journal EARN Economía Agraria y Recursos Naturales. Agricultural and Resource Economics <a href="https://economiaagroalimentaria.es/en/earn-journal/">https://economiaagroalimentaria.es/en/earn-journal/</a></p> <p><a href="https://doi.org/10.7201/earn.2023.01.01">DOI: https://doi.org/10.7201/earn.2023.01.01</a></p> <p><em>.</em></p> <p> </p>
Supplementary material for article: A database driven excavation of a waterlogged Neolithic settlement. The case of Küssnacht-Immensee Dorfplatz (Switzerland).
<p>These are all necessary data to produce 3D models of the excavated Neolithic waterlogged site of Küsnacht-Immensee Dorfplatz in the Canton Schwyz in Switzerland. Sediment deposits and find amounts are given as tables for GIS use in the txt-files. The codes for the semiquantitative description of the sediment are explained in the codes-pdf. The database model for the data acquisition of the sediment deposits and finds is given as accdb. Piles and horizontal wooden elements are given in the excel-file. </p> <p>Sediment profile photographies and the readymade 3D-model are given separately in 10.5281/zenodo.6536246.</p>
Reproducibility use cases from ORKG
<p>The dataset offers a selection of use cases from ORKG that serve as noteworthy examples for the reproducibility score. We previously showcased the concept of the reproducibility score during the inaugural symposium organized by <a href="https://zenodo.org/communities/grn/?page=1&size=20">The German Reproducibility Network (GRN)</a>. For detailed information, please refer to our presentation, accessible through the following <a href="https://doi.org/10.5281/zenodo.7974324">link</a>.</p> <p> </p> <p><strong>How to use:</strong></p> <ol> <li>The column "Paper ID" corresponds to a resolve paper within ORKG. To reach the specific resource, please navigate to the following URL: <a href="https://orkg.org/paper/XXX/">https://orkg.org/paper/XXX/</a> , where you should replace the "XXX" with the actual Paper ID.</li> <li>The column "Research Field" symbolizes the domain to which the paper is assigned.</li> <li>The column "Template ID" functions likewise to the "Paper ID," but in this case, you will need to visit the URL: <a href="https://orkg.org/template/XXX/">https://orkg.org/template/XXX/</a> and replace the "XXX" accordingly. Please be aware that a single paper may have multiple templates associated with it.</li> </ol>
Figure 1 in A case of phoresis of midges on Zygoptera
Figure 1. Cases of Rheotanytarsus sp. on Calopteryx virgo meridionalis larvae. Photo: Ricard Martin.
Fig. 2 in Why many Indonesian marine species remain undescribed: a case study using polychaete species discovery
Fig. 2. The composition of active local taxonomists. Blue, black, white, and grey bars indicate marine, faunal, floral, and microbial taxa, respectively (the last three taxa are non-marine). A list of the taxonomists is provided in Appendix 1.
Fig. 3 in Why many Indonesian marine species remain undescribed: a case study using polychaete species discovery
Fig. 3. Distributional map of Indonesian marine species exclusively described by local taxonomists. Grey and white land areas indicate Indonesia and the neighbouring countries, respectively.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.