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A Novel Approach to Impact Crater Mapping and Analysis on Enceladus, using Machine Learning: Supplemental data

This dataset includes the crater map and equatorial crater depths and diameters presented in the paper: A Novel Approach to Impact Crater Mapping and Analysis on Enceladus, using Machine Learning.

Supplemental material for / Ergänzende Materialien zu: de Capitani, A. (2023) Die Feuchtbodenfundstelle Cham-Bachgraben (Kanton Zug). Antiqua 57. Basel. ISBN 978-3-906182-33-9.

Supplemental material for / Ergänzende Materialien zu: de Capitani, A. (2023) Die Seeufersiedlungen von Cham-Bachgraben (Kanton Zug). Antiqua 57. Basel. ISBN 978-3-906182-33-9.Bleicher, Niels; Burri, Thomas; Diamantopoulou, Despoina; Eggenberger, Urs; Gut, Urs; Hofmann, Beda; Huber, Renata; Ismail-Meyer, Kristin; Pümpin, Christine; Walder, Felix; Widmer, Anna Barbara(English Version below)Ergänzende Datentabellen und weitere Angaben zu Band 1, Kapitel III. Mikromorphologische Untersuchung (Ismail-Meyer, K., Pümpin, Ch.), Band 1, Kapitel  IV. Dendrochronologie und Dendroarchäologie (Bleicher, N., Walder, F. und Gut, U.), Band 1, Kapitel  VI. Mittelalterliche Fischfache – ein Beitrag zur Fischerei am Zugersee (Huber, R.), sowie Band 2, Kapitel IV. Petrographie der Feldgesteinsartefakte unter Verwendung portabler Röntgenfluoreszenz (Burri, Th., Eggenberger, U., Hofmann, B., Diamantopoulou, D., Widmer, A. B.) Vorhandenen Dateien:<ul><li>Online-Anhang_1 (zu Band 1, Kapitel III). Ismail-Meyer/Pümpin: Cham-Bachgraben. Basisdatenbank Mikromorphologie, im Format .pdf und .xlsx.</li><li>Online-Anhang_2 (zu Band 1, Kapitel IV). Bleicher et al.: Cham-Bachgraben. Liste der Dendrogruppen, im Format .pdf und .xlsx.</li><li>Online-Anhang_3 (zu Band 1, Kapitel IV). Bleicher et al.: Cham-Bachgraben. Grafische Darstellung der Dendrogruppen, im Format .pdf.</li><li>Online-Anhang_4 (zu Band 1, Kapitel VI). Huber: Cham-Bachgraben. Holzliste aller Staken, im Format .pdf und .xlsx.</li><li>Online-Anhang_5 (zu Band 1, Kapitel VI). Huber: Hünenberg Dersbachstrasse 61. Holzliste aller Staken, im Format .pdf und .xlsx.</li><li>Online-Anhang_6 (zu Band 2, Kapitel IV). Burri et al.: Cham-Bachgraben. Chemismus der Mineralien, im Format .pdf und .xlsx.</li><li>Online-Anhang_7 (zu Band 2, Kapitel IV). Burri et al.: Cham-Bachgraben. Chemismus der Gesteine, im Format .pdf und .xlsx.</li><li>Online-Anhang_8 (zu Band 2, Kapitel IV). Burri et al.: pXRF Methodik Zusatzinformationen, im Format .pdf und .docx.</li></ul> Supplementary data and further details on volume 1, chapter III. Mikromorphological Investigation (Ismail-Meyer, K., Pümpin, Ch.), volume 1, chapter IV. Dendrochronology and Dendroarchaeology (Bleicher, N., Walder, F. und Gut, U.), volume 1, chapter VI. Medieval Fish Traps - A Contribution to Fishing on Lake Zug (Huber, R.), as well as volume 2, chapter IV. Petrography of Field Rock Artifacts Using Portable X-Ray Fluorescence (Burri, Th., Eggenberger, U., Hofmann, B., Diamantopoulou, D., Widmer, A. B.) Contents: <ul><li>Online-Anhang_1 (supplement to volume 1, chapter III). Ismail-Meyer/Pümpin: Cham-Bachgraben. Mikromorphology Database, in .pdf and .xlsx format.</li></ul> <ul><li>Online-Anhang_2 (supplement to volume 1, chapter IV). Bleicher et al.: Cham-Bachgraben. List of Dendro Groups, in .pdf and .xlsx format.</li></ul> <ul><li>Online-Anhang_3 (supplement to volume 1, chapter IV). Bleicher et al.: Cham-Bachgraben. Graphical representation of the Dendro Groups, in .pdf format.</li></ul> <ul><li>Online-Anhang_4 (supplement to volume 1, chapter VI). Huber: Cham-Bachgraben. List of all wooden stakes, in .pdf and .xlsx format.</li></ul> <ul><li>Online-Anhang_5 (supplement to volume 1, chapter VI). Huber: Hünenberg Dersbachstrasse 61. List of all wooden stakes, in .pdf and .xlsx format.</li></ul> <ul><li>Online-Anhang_6 (supplement to volume 2, chapter IV). Burri et al.: Cham-Bachgraben. Chemism of Minerals, in .pdf and .xlsx format.</li></ul> <ul><li>Online-Anhang_7 (supplement to volume 2, chapter IV). Burri et al.: Cham-Bachgraben. Chemism of the Rocks, in .pdf and .xlsx format.</li></ul> <ul><li>Online-Anhang_8 (supplement to volume 2, chapter IV). Burri et al.: pXRF Methodology Additional Information, in .pdf and .docx format.</li></ul>

opencc-by-4.0May 2011View details →

Figs 1-7 in A revision of the genus Neosclerus C . Supplement I (Coleoptera: Staphylinidae: Paederinae)

Figs 1-7: Neosclerus immutatus sp. n.: habitus (1); forebody (2); head (3); male sternite VII (4); male sternite VIII (5); aedeagus in lateral and in ventral view (6-7). Scale bars: 1: 1.0 mm; 2: 0.5 mm; 4-5: 0.2 mm; 3, 6-7: 0.1 mm.

Supplement A. Wolf et al: 'Western Caucasus regional hydroclimate controlled by cold-season temperature variability since the Last Glacial Maximum'

This repository contains all proxy data presented in A. Wolf et al, "Western Caucasus regional hydroclimate controlled by cold-season temperature variability since the Last Glacial Maximum". The data can be used to replicate figures and analyses presented in the main text. Additionally, data can be accessed in the supplement material and in the data availability statement.

The supplemental data for the paper: "Methodology of generation of CFD meshes and 4D shape reconstruction of coronary arteries from patient-specific dynamic CT"

The supplemental data for the paper: "Methodology of generation of CFD meshes and  4D shape reconstruction of coronary arteries from patient-specific dynamic CT"A video file (minimum play resolution is HD to see the mesh) showing the movement of the LCA throughout the heart cycle and .STL files for 10--100% (increment of 10\%) of the heart cycle phase.

opencc-by-4.0Oct 2022View details →

Supplemental files for "Lateral and Temporal Constraints on The Depositional History of The Bonneville Salt Flats, Utah, USA"

Radiocarbon, strontium isotope, optically stimulated luminescence, X-ray diffraction, X-ray fluorescence, tephra microprobe, grain-size, ostracode, and diatom occurrence data, from the Bonneville Salt Flats as well as regional strontium isotope data.

Video Supplement for "Understanding the dependence of mean precipitation on convective treatment and horizontal resolution in tropical aquachannel experiments"

A time series of snapshots of precipitable water (shading) and rainfall rate (contour) in the tropical aquachannel simulations.

Late Quaternary activity of the NW Cardrona Fault, Otago, New Zealand - Supplements S1 and S2

Supplementary material to accompany: van den Berg, E. J., Williams, J. N.*, Stirling, M. W., Barrell, D. J. A., Griffin, J. D., Litchfield, N. J., & Wang, N. (2024). Late Quaternary activity of the NW Cardrona Fault, Otago, New Zealand. New Zealand Journal of Geology and Geophysics, 1–21. https://doi.org/10.1080/00288306.2023.2297962 This dataset includes: <ul> <li>Supplement S1: Supplementary figures S1-S3</li> <li>Supplement S2: Code used to generate the OxCal models for the Macdonalds Creek and Gibbston trenches</li> </ul> *Corresponding author: jack.williams@otago.ac.nz

Supplemental Movie 1: Stochastic Ca2+ transients in ICC-DMP.

Supplemental Movie 1: Stochastic Ca2+ transients in ICC-DMP.  Movie of intracellular Ca2+ transients in ICC-DMP labelled with the genetically encoded Ca2+ indicator GCaMP3.  The top left FOV shows elongated ICC-DMP at 60x and the top right FOV shows ICC-DMP at 100x magnification.  Note the lack of coincidence of Ca2+ transients between the blue bit-masked cell and the non-bit-masked cell in the 100x FOV.  The blue bit-masked ICC-DMP in the 100x FOV was used to construct a spatio-temporal map of Ca2+-induced fluorescence intensity along the length of the cell (lower panel).  Note the stochastic firing of spontaneous Ca2+ transients in ICC-DMP.  Copied with permission from reference (127).    <a href="https://doi.org/10.1152/physrev.00036.2022">https://doi.org/10.1152/physrev.00036.2022</a>

Supplemental Movie 3: Simultaneous dual-color imaging of ICC-SM in the colon and adjacent SMCs.

Supplemental Movie 3: Simultaneous dual-color imaging of ICC-SM in the colon and adjacent SMCs.   Video shows spontaneous, propagating Ca2+ waves through an ICC-SM network along the submucosal surface of the CM in the proximal colon.  FOVs are from a muscle of a mouse expressing GCaMP6f in ICC (left FOV; colored green) and RCaMP1.07 in SMCs (right FOV; colored red) imaged simultaneously with a 20x objective. The characteristics of the fluorophores are such that there is minimal spectral overlap. Signals in ICC-SM and SMCs are coordinated, showing initiation of each cycle of Ca2+ transients in the ICC-SM network followed by activation of SMCs adjacent to ICC-SM. Bottom panel shows traces from fluorescence images:  ICC-SM transients (green trace) preceded Ca2+ signals in SMCs (red trace). Copied with permission from Reference (133).

Supplemental Movie 2: Clustered Ca2+ transients (CTCs) in gastric ICC-MY occur from multiple firing sites.

Supplemental Movie 2: Clustered Ca2+ transients (CTCs) in gastric ICC-MY occur from multiple firing sites.  ICC-MY in the gastric antrum firing of CTCs and imaged at high resolution with a spinning disk confocal microscope using a 60x objective. Ca2+ signals were monitored in a gastric muscle from a mouse with the genetically encoded Ca2+ indicator, GCaMP6f, expressed exclusively in ICC. The left panel shows typical stellate-shaped ICC-MY with multiple interconnecting processes. The middle panel shows the Ca2+ particle (PTCL) activity, color coded in blue for raw PTCLs, and the centroids of particles are indicated in purple and green indicates Ca2+ firing sites. There are multiple sites firing Ca2+ transients during the CTCs.  The right panel shows an occurrence map of color-coded initiation/firing sites. The pattern of firing sites Ca2+ activity was temporally clustered as activation of Ca2+ transients swept through the network of ICC-MY.  The onset of the CTCs was explosive, and then asynchronous firing of occurred at multiple sites and was sustained for more than 2 sec.  Note also the complete quiescence of firing immediately upon conclusion of a CTC (absolute refractory period) and then sporadic initiation of firing with time.  It is the re-initiation of firing that sets off the next CTC by activating ANO1 channels, depolarization and activation of voltage-dependent Ca2+ current (see text for details).  Reformatted with permission from reference (106).

Supplemental Movie 4: Subtypes of ICC-IM with different Ca2+ firing patterns in the IAS.

Supplemental Movie 4:  Subtypes of ICC-IM with different Ca2+ firing patterns in the IAS Video from the distal edge of the internal anal sphincter (IAS) from a mouse expressing GCaMP6f exclusively in ICC using a 20x objective. Active ICC-IM show 2 patterns of Ca2+ transients.  Type I cells (* and green text) displayed stochastic Ca2+ transients with short distances of spatial spread.  Type II cells (* and yellow text) showed whole-cell flashes of activity. The still image and spatio-temporal (ST) maps (derived from the highlighted cells) and Ca2+ traces shown in Fig. 20A-E were generated from this recording.  Data correspond to figure in reference (136).

Supplemental Movie 5: Pattern of slow wave activation in intact stomach as viewed by imaging of Ca2+ transients in ICC-MY.

Supplemental Movie 5:  Pattern of slow wave activation in intact stomach as viewed by imaging of Ca2+ transients in ICC-MY  Ca2+ transients were monitored in canulated whole stomachs taken from mice expressing GCaMP3 exclusively in ICC (upper left panel). The whole stomach from fundus through the pylorus is visualized in the FOV.  Right panel shows differentiated image in which background (unchanged pixels) remains black and active pixels (ICC) are intensity-coded to white.  Activation of Ca2+ waves (which activate currents in ICC-MY and generate slow waves in gastric muscles) develop into a spiral pattern of activation from a dominant pacemaker region near the greater curvature of the corpus.  Ca2+ transients in the whole stomach are plotted as a spatio-temporal map, displaying proximal to distal propagation of Ca2+ waves along the length of the stomach (lower panel). (Provided by Dr. Grant Henning)

opencc-by-4.0Jan 2024View details →

Public metagenome datasets annotated using SingleM, using a supplemented reference package.

The SingleM package used for supplementing is available at 10.5281/zenodo.10360136

dryad40/100

Effects of food supplementation and helminth removal on space use and spatial overlap in wild bank vole populations

Animal space use and spatial overlap can have important consequences for population-level processes such as social interactions and pathogen transmission. Identifying how environmental variability and inter-individual variation affect spatial patterns and in turn influence interactions in animal populations is a priority for the study of animal behavior and disease ecology. Environmental food availability and macroparasite infection are common drivers of variation, but there are few experimental studies investigating how they affect spatial patterns of wildlife. Bank voles (Clethrionomys glareolus) are a tractable study system to investigate spatial patterns of wildlife and are amenable to experimental manipulations. We conducted a replicated, factorial field experiment in which we provided supplementary food and removed helminths in vole populations in natural forest habitats and monitored vole space use and spatial overlap using capture-mark-recapture methods. Using network analysis, we quantified vole space use and spatial overlap. We compared the effects of food supplementation and helminth removal and investigated the impact of season, sex, and reproductive status on space use and spatial overlap. We found that food supplementation decreased vole space use while helminth removal increased space use. Space use also varied by sex, reproductive status, and season. Spatial overlap was similar between treatments despite up to three-fold differences in population size. By quantifying the spatial effects of food availability and macroparasite infection on wildlife populations, we demonstrate the potential for space use and population density to trade off and maintain consistent spatial overlap in wildlife populations. This has important implications for spatial processes in wildlife including pathogen transmission.

opencc-zeroFeb 2024View details →

opencc-by-4.0Feb 2024View details →

Supplemental Files for 2024GL109663R

The ATCF a-deck files containing all model forecasts in the Atlantic from 2020-2022 used in 2024GL109663R. The variables and formatting of the a-deck files can be found at  <pre>https://www.nrlmry.navy.mil/atcf_web/docs/database/new/abdeck.txt</pre>

opencc-by-4.0Mar 2024View details →

Supplemental material to "Solving Quantified Modal Logic Problems by Translation to Classical Logics"

These files are associated with the manuscript entitled "Solving Quantified Modal Logic Problems by Translation to Classical Logics" by Alexander Steen, Geoff Sutcliffe, Christoph Benzmüller. Contact: Alexander Steen <alexander.steen@uni-greifswald.de> Contents -----------   - QMLTP-monomodal-NX0.tar.gz     This archive contains the TPTP NX0 representations of the 580 mono-modal     problems translated from the QMLTP library [1,2].        - QMLTP-monomodal-TF0-embedded-rigid-local.tar.gz     This archive contains the embedded TF0 files created      from the monomodal NX0 files using the Logic Embedding Tool [3].        - QMLTP-monomodal-TH0-embedded-rigid-local.tar.gz     This archive contains the embedded TH0 files created      from the monomodal NX0 files using the Logic Embedding Tool [3,4].      - QMLTP-multimodal-NX0-and-embedded.tar.gz     This archive contains the TPTP NX0 representations of the 20 multi-modal     problems translated from the QMLTP library [1,2]. Additionally, it     contains the 20 embedded TF0 and the 20 embedded THF files created      from the NX0 files using the Logic Embedding Tool [3,4].        - QMLTP-primary-evaluation-results-QMLTP.zip     This archive contains the primary evaluation data creating from     running E 3.0.03, Leo-III 1.7.8, Nitpick 2016, Vampire 4.8,      MleanCoP 1.3, nanoCoP-M 2.0 on the problem files.     All reasoning systems except Nitpick were run on the StarExec Miami cluster with a 60s     wall clock and 480 CPU time limit. The StarExec Miami computers have an     octa-core Intel Xeon E5-2667 3.20 GHz CPU, 128 GiB memory, and run the     CentOS Linux release 7.4.1708 operating system. Nitpick was run on a server     with a 60s wall clock time limit. The server has an octa-core Intel Xeon E5-     2609 2.50 GHz CPU, 64 GiB memory, and the CentOS Linux release 7.9.2009     operating system.      - README     This file.                [1] T. Raths and J. Otten. The QMLTP Problem Library for First-Order Modal Logics.     In B. Gramlich, D. Miller, and U. Sattler, editors, Proceedings of the 6th International Joint Conference on Automated Reasoning,     number 7364 in Lecture Notes in Artificial Intelligence, pages 454–461. Springer, 2012. [2] http://www.iltp.de/qmltp/ [3] A. Steen. An extensible logic embedding tool for lightweight non-classical reasoning (short paper).     In B. Konev, C. Schon, and A. Steen, editors, Proceedings of the 8th Workshop on Practical Aspects of Automated     Reasoning, number 3201 in CEUR Workshop Proceedings, 2022. [4] https://github.com/leoprover/logic-embedding

opencc-by-4.0Mar 2024View details →

The structure of simple satellite variation in the human genome and its correlation with centromere ancestry (Supplemental Data)

Accompanying <a href="https://github.com/is-the-biologist/1KGP_SATS" target="_blank" rel="noopener">Github</a> Supplemental File 1. BLAST results of k-mer concatemers against T2T-CHM13-v2.0. Supplemental File 2. Annotations of centromeres, and telomeres of T2T-CHM13-v2.20. Table of abundance of k-mers in annotated regions as numpy file from BLAST hits. Abundance of k-mers across genome in 100kb bins from BLAST hits as .npz files accessible by example:     import numpy as np     dense = np.load("filename.npz")     dense["chr1"]    Supplemental File 3. Table of pairwise R2 between simple satellites and table of pairwise interspersion OR between simple satellites. Folder containing QQ plots of negative binomial fit of satellite copy number distribution used to qualitatively asses model fit. Supplemental File 4. Materials and results of cenGRM analysis. Boundaries used for centromeric regions of each cenGRM, cenGRMs in GCTA format, and tables with the results of cenGRM GCTA runs. Also provide pdfs of the dendrograms/heatmaps produced from UPGMA clustering of each cenGRM.  Supplemental File 5 Non-human significant BLAST hits from BLAST-ing k-mer concatamers to non-human sequences. Supplemental Table 1. Copy number normalized to 1x depth given GC bias of 126 most abundant satellites analyzed in paper in each individual. Additional columns represent metadata of the individual: <ul> <li>instrument: sequencer instrument name used to sequence library.</li> <li>run: sequencer run of the library.</li> <li>flow: flowcell ID of the ibrary.</li> <li>pop: 1,000 Genomes Project population ID.</li> <li>superpop: 1,000 Genomes Project superpopulation ID.</li> <li>reads: average autosomal read depth of the library.</li> </ul> Supplemental Table 2. Copy number normalized to 1x depth given GC bias of the top 126 most abundant satellites analyzed in paper in each individual of the 1KGP, plus estimates of the same satellites in CHM13 short-read libraries subsampled from 18x-0.5x, 18x depth simulated library of the T2T-CHM13v2.0 assembly analyzed using k-Seek, and Tandem Repeat Finder results of the T2T-CHM13v2.0 asembly <a href="https://doi.org/10.1126/science.abk3112" target="_blank" rel="noopener">Hoyt 2022</a>. Supplemental Table 3. Copy number normalized to 1x depth given GC bias of all tandem repeats with k-mer <= 20 (6,309) found collectively in the CHM13 short-read libraries subsampled from 18x-0.5x, 18x depth simulated library of the T2T-CHM13v2.0 assembly analyzed using k-Seek, and Tandem Repeat Finder results of the T2T-CHM13v2.0 asembly <a href="https://doi.org/10.1126/science.abk3112" target="_blank" rel="noopener">Hoyt 2022</a>.

opencc-by-4.0Oct 2023View details →

F I G U R E 2 in Effects of dietary hydrolysate supplementation on growth, body composition, hematological responses, and liver histology of juvenile giant trevally (Caranx ignobilis Forsskal, 1775)

F I G U R E 2 Somatic indexes and condition factor of giant trevally fed experimental diets for 8 weeks. ns, nonsignificant. Different subscript letters indicate differences among treatments.