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4,144 results for “ITS barcode”
FIGURE 2 in Description and DNA barcoding of Lycenchelys lenzeni, a new species of eelpout (Perciformes: Zoarcidae) from the deep sea off the Kuril Archipelago
FIGURE 2. Photograph of preserved specimen (A) and line drawing (B) of holotype of Lycenchelys lenzeni sp. nov., ZMH 26255, Bussol Strait, southwest of Simushir Island, Kuril Archipelago, Russia, adult female, 296 mm SL.
Supplementary material 1 from: Zúñiga JD, Gostel MR, Mulcahy DG, Barker K, Hill A, Sedaghatpour M, Vo SQ, Funk VA, Coddington JA (2017) Data Release: DNA barcodes of plant species collected for the Global Genome Initiative for Gardens Program, National Museum of Natural History, Smithsonian Institution. PhytoKeys 88: 119-122. https://doi.org/10.3897/phytokeys.88.14607
List of samples collected for the Global Genome Initiative for Gardens project selected for DNA barcoding, with GenBank accession numbers and genetic sample identification numbers. All the sequences are included in the GGI-Gardens BioProject. : Explanation note: List of samples collected for the Global Genome Initiative for Gardens project selected for DNA barcoding, with GenBank accession numbers and genetic sample identification numbers.
Raw ONT pod5 data: Barcoded C12/C13 Aminobacter P9b DNA
<p>Aminobacter P9b samples were incubated on a C12 and a C13 medium, respectively. Cells were harvested by centrifugation. Pellets were resuspended and DNA extracted. The DNA was barcoded using the ONTs native barcoding kit, prepared with the SQK-LSK109 protocol, and sequenced on a MinION with an r9.4.1 flowcell.</p> <p>For barcoding, we used the EXP-NBD114 Barcodes 20 and 21:</p> <p>BC 20: C12<br>BC 21: C13</p>
BOLD release 5 April 2024, barcodes ranked, taxa BAGS graded
Open the record for dataset details and reuse information.
Raw ONT pod5 data: Barcoded D2O Aminobacter P9b DNA
<p>Aminobacter P9b samples were incubated on a 100% D2O, 30% D2O and 0% D2O medium, respectively. Cells were harvested by centrifugation. Pellets were resuspended and DNA extracted. The DNA was barcoded using the ONTs native barcoding kit, prepared with the SQK-LSK109 protocol, and sequenced on a MinION with an r9.4.1 flowcell.</p> <p>For barcoding, we used the EXP-NBD114 Barcodes 14, 15, and 16:</p> <p>BC 14: 0% D2O<br>BC 15: 30% D2O<br>BC 16: 100% D2O</p>
FIGURES 52–57 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 52–57. Localities of Nymphomyia alba Tokunaga (52–53), N. kaluginae Makarchenko (54), N. levanidovae Rohdendorf et Kalugina (55), and N. kannasatoi Makarchenko et Gunderina (56–57). 52, Monobe River, Honshu, Japan (photo by S. Sato); 53, Prozrachnyi Stream, Kunashir Island, Russia (photo by M. Astakhov); 54, Bolshoi Garmakan River, Zeya River basin (photo by E. Makarchenko); 55, Kedrovaya River, South Primorye (photo by E. Makarchenko); 56, Kanna River, Honshu, Japan (photo by S. Sato); 57, Belaya River, South Sakhalin (photo by E. Makarchenko).
FIGURE 58 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURE 58. Ultrametric Bayesian inference (BI) tree inferred from the cytochrome c oxidase I (COI) gene fragment and the results of species delineation of the genus Nymphomya Tokunaga, 1932. Bayesian posterior probabilities (higher than 0.7) are given above the tree nodes. Vertical bars correspond to molecular operational taxonomic units by ASAP, mPTP, GMYC. The sequences obtained in this study are in bold.
FIGURES 43–45 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 43–45. Adult male (43) and female (44–45) terminalia of Nymphomyia levanidovae Rohdendorf et Kalugina, in ventral view. For abbreviations see Figs. 11–16, 30–42. Scale bars—50 μm.
FIGURES 46–51 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 46–51. Localities of Nymphomyia orientalis orientalis subsp. nov. (46), N. orientalis makcha subsp. nov. (47), N. rohdendorfi Makarchenko (48–51). 46, Polovinka River, Amur River basin (photo by N. Yavorskaya); 47, Makcha River, Zeya River basin (photo by E. Makarchenko); 48, Intrigan River, Kolyma River basin (photo by E. Khamenkova); 49, Kalanegir River, Katun River basin), of Altai Mountains (photo by A. Kotovshchikov); 50–51, Khurendya River, Kolyma River basin, adults wait out bad weather on coastal rocks (photo by A. Krasheninnikov).
FIGURES 35–37 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 35–37. Adult male (35) and female (36–37) terminalia of Nymphomyia kaluginae Makarchenko. 35–36, in ventral view; 37, in lateral view. ae, aedeagus; ap, anal point; ce, cerci; gs, gonostylus; gx, gonocoxite; pp, paratergal projection. Scale bar—50 μm.
FIGURES 21–29 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 21–29. Adult male terminalia of Nymphomyia kannasatoi Makarchenko et Gunderina from Japan (21–28) and Sakhalin Island (29). 21, paratergal projection; 22, 29, in ventral view; 23, in dorsal view; 24–28, gonostylus in varies positions. Scale bars—50 μm.
FIGURES 38–42 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 38–42. Adult male (38–39) and female (40–42) terminalia of Nymphomyia alba Tokunaga. 38, in dorsal view; 39, 41, in lateral view; 40, sternite IX process; 42, in ventral view. ae, aedeagus; ce, cerci; gs, gonostylus; gx, gonocoxite; pp, paratergal projections; sp, sternite IX median process. Scale bars—50 μm.
FIGURES 30–34 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 30–34. Adult female terminalia of Nymphomyia kannasatoi Makarchenko et Gunderina from Japan (30–33) and Sakhalin Island (34). 30, 32–33, in ventral view; 31, in dorsal view; 34, ventral margin and fingerlike projections of sternite VIII. pp—paratergal projections, vp—ventral projection, fp—fingerlike projection, vm—ventral margin, ce—cerci. Scale bars—50 μm.
FIGURES 11–14 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 11–14. Terminalia of adult females of Nymphomyia orientalis orientalis subsp. nov. (11, 13) and N. orientalis makcha subsp. nov. (12, 14) in ventral view. ce, cerci; ivl, inner ventral lobe; pp, paratergal projection. Scale bars—50 μm.
FIGURES 17–20 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 17–20. Female terminalia of Nymphomyia rohdendorfi Makarchenko in ventral view from Anyuradat Stream (Kolyma River basin) (paratype) (17), Intrigan River (Kolyma River basin) (18), Khurendya River (Kolyma River basin) (19) and Altai Mountains (20).
FIGURES 15–16 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 15–16. Adult male (15) and female (16) terminalia of Nymphomyia rohdendorfi Makarchenko in ventral view. fp, fingerlike projection; ivl, inner ventral lobe. Scale bar—50 μm.
FIGURES 8–10 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 8–10. Adult male terminalia of Nymphomyia orientalis orientalis subsp. nov. in ventral view (8) and in dorsal view (9), eggs on anal segments of male and female in copula (10). Scale bars—50 μm.
FIGURES 3–7 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURES 3–7. Adult male of Nymphomyia orientalis orientalis subsp. nov. 3, head in dorsal view; 4, head in ventral view; 5, head in lateral view; 6, terminal antennal sensilla; 7, antenna. R, rostrum; L, labium; ts, terminal antennal sensilla. Scale bar for Figs. 3–5, 7–50 μm; for Fig. 6–20 μm.
FIGURE 1 in Review of archaic nymphomyiids (Diptera, Nymphomyiidae) of the Russian Far East and bordering territories, with describing of new taxa and DNA barcoding of known species
FIGURE 1. Swarming of adults Nymphomyia kannasatoi Makarchenko et Gunderina in Kanna River, Japan (photo by S. Sato).
Figure 2 in The current state of DNA barcoding of macroalgae in the Mediterranean Sea: presently lacking but urgently required
Figure 2: Rhodophyta data by country from Taxonomy page on the Barcode of Life Data System (BOLD). Source: http://www.boldsystems.org/index.php/TaxBrowser_Home
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.