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Fig. 1 in Oceanisphaera avium sp. nov., isolated from the gut of the cinereous vulture, Aegypius monachus
Fig. 1. Phylogenetic tree based on 16S rRNA gene sequences of strain AMac2203T and type strains of two closely related taxa. The neighbour-joining (NJ) algorithm was employed for reconstruction, and the maximum-parsimony (MP) and maximum-likelihood (ML) algorithms were used for additional analyses. Bootstrap values (>70 %) based on 1000 replicates are shown at the nodes (NJ/MP/ML, respectively). Filled diamonds indicate branches that are found in all trees, including those based on MP and ML. Enterobacter cloacae subsp. cloacae ATCC 13047T was established as an outgroup. Bar, 0.01 substitutions per nucleotide position.
Fig. 2 in Wickerhamomyces menglaensis f.a., sp. nov., a yeast species isolated from rotten wood
Fig. 2. Photomicrographs of Wickerhamomyces menglaensis f.a., sp. nov. NYNU 1673. (a) Budding cells grown on YM broth for 3 days at 25 ǪC. (b) Pseudohyphae grown on YCBS agar for 13 days at 25 ǪC. Bar, 10 µm.
Fig. 2 in Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs
Fig. 2. Phylogenomic relationship based on concatenated alignment of amino acid sequences between strains A1T, B1T and H1T and other related taxa of the family Comamonadaceae. The tree was reconstructed using the maximum-likelihood method based on concatenated alignment of amino acid sequences of 30 conserved marker genes coded in the genomes. Bootstrap values are shown at branch points.
Fig. 1 in Pannonibacter carbonis sp. nov., isolated from coal mine water
Fig. 1. Phylogenetic tree showing the relationship of strains Q4.6T and Q2.11 with strains of closely related species within the genus Pannonibacter as inferred from 16S rRNA gene sequences. Data with gaps and ambiguous nucleotides were removed during alignment for reconstruction of the tree. The tree was generated using the NJ method in MEGA 7.0 based on a comparison of 1497 nt. Bootstrap values are expressed as percentages of 1000 replications. The GenBank/EMBL/DDBJ accession number of each sequence is shown in parentheses.
Fig. 3 in Gordonia mangrovi sp. nov., a novel actinobacterium isolated from mangrove soil in Hainan
Fig. 3. Phylogenomic tree reconstructed on the TYGS (https://tygs.dsmz.de/). Tree inferred with FastME 2.1.6.1 [36] from genome BLAST distance phylogeny (GBDP) distances calculated from genome sequences. The branch lengths are scaled in terms of GBDP distance formula d5. The numbers above branches are GBDP pseudo-bootstrap support values>60% from 100 replications, with an average branch support of 84.6%. The tree was rooted at the midpoint [37]. Leaf labels with different colours indicate species and subspecies clusters.
Fig. 1. Neighbour-joining phylogenetic tree derived using 16S rRNA gene sequences, showing the relationships between strain HNM0687T in Gordonia mangrovi sp. nov., a novel actinobacterium isolated from mangrove soil in Hainan
Fig. 1. Neighbour-joining phylogenetic tree derived using 16S rRNA gene sequences, showing the relationships between strain HNM0687T and other type strains of the genus Gordonia. Only values above 50% are shown. Asterisks represent clades that were also recovered by the maximum-likelihood and maximum-parsimony methods. Bar, one nucleotide substitution per 100 nucleotides.
Fig. 1 in Hymenobacter ginkgonis sp. nov., isolated from bark of Ginkgo biloba
Fig. 1. Neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showing the phylogenetic position of strain HMF4947T in the genus Hymenobacter. Bootstrap percentages (>70 %) from neighbour-joining (above nodes) analyses are shown. Filled and open circles indicate nodes recovered by all three treeing methods or by two treeing methods, respectively. Rhodocytophaga aerolata 5416 T-29T (EU004198) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 2 in Pseudonocardia lutea sp. nov., a novel actinobacterium isolated from soil in Chad
Fig. 2. Neighbour-joining tree showing the phylogenetic position of strain NEAU-G57T and related species based on 16S rRNA gene sequences. Asterisks denote branches that were also recovered using the maximum-likelihood method. Bootstrap values>50 % (based on 1000 replications) are shown at branch points. Bar, 0.01 substitutions per nucleotide position.
Fig. 1 in DraCOnibaCTerium mangrOVi sp. nov., isolated from mangrove sediment
Fig. 1. Phylogenetic relationship of strain GM2-18T and close relatives based on 16S rRNA gene sequences. The tree was reconstructed using the maximum-likelihood method. Bootstrapping was carried out with 1000 replicates. Branch node values below 50% are not shown. Lishizhenia tianjinensis CGMCC 1.7005T was selected as the outgroup. Bar, 0.02 nucleotide substitutions per position.
Fig. 1 in MaNgROVIVIRga CUNICULI gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family MaNgROVIVIRgaCeae fam. nov.
Fig. 1. (a) Sediments in the mangrove forest at KAUST bioturbated by Uca species crabs; crab barrows are indicated by yellow arrows. Leaves forming mangrove litter are also visible. Bar, 10 cm. (b) Aquarium filled with mangrove bioturbated sediments and FSW for the incubation of DCs; bar, 6 cm. (c) Aerial view of DCs placed on the surface of mangrove sediments and cover with FSW inside the aquarium; bar, 6 cm.
Fig. 2. A in Dyella dinghuensis sp. nov. and Dyella choica sp. nov., isolated from forest soil
Fig. 2. A maximum-likelihood tree based on the concatenated sequences of the housekeeping genes atpD, gyrB and lepA, showing the relationship of strains DHOA06T and 4 M-K27T to other species in the genus Dyella. Filled circles at nodes indicate generic branches that were also recovered using neighbour-joining and maximum-parsimony algorithms. Bootstrap values are shown in percentages of 1000 replicates; only bootstrap values Ȅ50 % are indicated. Xanthomonas campestris ATCC 33913T was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Fig. 1 in Corticicoccus populi gen. nov., sp. nov., a member of the family Staphylococcaceae, isolated from symptomatic bark of Populus × euramericana canker
Fig. 1. Maximum-likelihood tree showing phylogenetic relationships among members of the family Staphylococcaceae and two novel strains based on 16S rRNA gene sequences. Bacillus beringensis BR035T was used as an outgroup. Numbers at nodes are bootstrap values (%) based on 1000 replicates; only bootstrap values>50 % are shown. Bar, 0.01 substitutions per nucleotide site.
Fig. 1 in Planococcus versutus sp. nov., isolated from soil
Fig. 1. Scanning (a) and scanning transmission (b) electron micrographs of cells of strain L10.15T grown at 26 ǪC. Most of the cells were observed as diplococci, and cell division septa at different stages were also observed. Scale bars, (a) 5 µm and (b) 0.5 µm.
Fig. 1. Phylogenetic relationship between strain Gsoil 809T in Arachidicoccus ginsenosidivorans sp. nov., with ginsenosideconverting activity isolated from ginseng cultivating soil
Fig. 1. Phylogenetic relationship between strain Gsoil 809T and other related species of the family Chitinophagaceae. The tree was reconstructed using the maximum-likelihood method based on 16S rRNA gene sequences. Bootstrap values (expressed as percentages of 1000 replications)>60 % are shown at branch points. Filled circles indicate that the corresponding nodes were also recovered in the tree generated with maximum-parsimony and neighbour-joining algorithms. Thermoflavifilum aggregans P373T (GenBank accession number AM749771) was used as an outgroup. Bar, 0.05 substitutions per nucleotide position.
FIGURE. Phylogenetic analysis of Chrysosporium spp. based on ITS sequences. Statistical support values (≥50 %) are shown at nodes, and presented as ML bootstrap support/Bayesian posterior probabilities. Names in black bold are the strains isolated in this study, the coloured names are the new species. in Morphological and phylogenetic characterisations reveal nine new species of Chrysosporium (Onygenaceae, Onygenales) in China
FIGURE. Phylogenetic analysis of Chrysosporium spp. based on ITS sequences. Statistical support values (≥50 %) are shown at nodes, and presented as ML bootstrap support/Bayesian posterior probabilities. Names in black bold are the strains isolated in this study, the coloured names are the new species.
Virus isolation data improve host predictions for New World rodent orthohantaviruses
<p>Data and code for "Virus isolation data improve host predictions for New World rodent orthohantaviruses" in Journal of Animal Ecology</p>
Draft Genome Sequence of Pseudomonas sp. Strain MWU13-2922, Isolated from a Wild Cranberry Bog in Truro, Massachusetts
<p>Annotated genome of Pseudomonas sp. MWU13-2922</p>
Draft Genome Sequences of Pseudomonas sp. Strain MWU12-2233, Isolated from a Wild Cranberry Bog in Provincetown, Massachusetts
<p>Annotated genome of Pseudomonas sp. MWU12-2233.</p>
Draft Genome Sequence of Pseudomonas sp. strain MWU13.2105, isolated from Wild Cranberry Bog in Truro, Massachusetts
<p>Annotated genome of Pseudomonas sp. strain MWU13.2105.</p>
Subspecies and Distribution. M. n. nattereriKuhl, 1817 — broadly extended in N, C & E Europe until 60° N and W Turkey. M.n.hoveliD.L.Harrison,1964—SCTurkey,WSyria,Lebanon,Israel,andWJordan. M. n. tschuliensis Kuzyakin, 1935 — Crimea S to Caucasus region. Isolated populations from W Russia, Crete, Cyprus, and Iraq, Iran, and Turkmenistan are not currently assigned to a subspecies. in Vespertilionidae
Subspecies and Distribution. M. n. nattereriKuhl, 1817 — broadly extended in N, C & E Europe until 60° N and W Turkey. M.n.hoveliD.L.Harrison,1964—SCTurkey,WSyria,Lebanon,Israel,andWJordan. M. n. tschuliensis Kuzyakin, 1935 — Crimea S to Caucasus region. Isolated populations from W Russia, Crete, Cyprus, and Iraq, Iran, and Turkmenistan are not currently assigned to a subspecies.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.