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hAMRonization Table Data
<p>hAMRonization</p> <p>This repo contains the hAMRonization module and CLI parser tools that combine the outputs of 18 (as of 2022-09-25) disparate antimicrobial resistance gene detection tools into a single unified format.</p> <p>This is an implementation of the <a href="https://github.com/pha4ge/hAMRonization/blob/master/docs/hAMRonization_specification_details.csv">hAMRonization AMR detection specification scheme</a> which supports gene presence/absence resistance and mutational resistance (if supported by the underlying tool).</p> <p>This supports a variety of summary options including an <a href="https://finlaymagui.re/assets/interactive_report_demo.html">interactive summary</a>.</p>
Supplementary tables for Geophysical Research Letters_2022GL101947
<p>Data associated with the publication " Evolutionary stasis during the Mesoproterozoic Columbia-Rodinia supercontinent transition"</p>
Supplyment Table
<p>This data set is upload for the submitted article entitled by 'Distribution of Rare Earth Elements in the Clay-Sized Fraction of REE-Rich Sediment, Western Pacific Ocean' in <em>Journal of Geophysical Research: Solid Earth</em>.</p>
Table S1. Full factorial combination of laser process parameters and experimental results.
<p>This dataset is experimental results from a research topic of A robust artificial intelligence-based method for predicting and optimizing cut quality in curved laser cutting of electrical steel sheet.</p>
Table S6.44,270 pairs of co-expression relationships Between 612 lncRNAs and 2,742 mRNAs
<p>The file includes information about 44270 lncRNA-mRNA pairs related to lncRNA.ensembl,lncRNA.symbol,gene.ensembl,gene.symbol,r,FDR, as well as information about 612 lncRNAs and 2742 mRNAs associated with 44274 co-expressed gene pairs. Where, r denotes differential gene significance coefficient; p-value was corrected by Benjamini-Hochberg algorithm to obtain FDR value.</p>
Table S7.Data on 392 potential triplex-forming lncRNAs and target genes, and the number of R/Y/M-type PTS.
<p>The file includes information about 392 triplex lncRNA related to lncRNA.ensembl,lncRNA.symbol,Number of potential triplex target mRNA,percentage of positively correlated mRNA, as well as information about 7,839 purine motif (R),12,678 pyrimidine motif (Y), and 9,214 purine-pyrimidine motif (or mixed/M) PTS Information.</p>
Table S5. The differential expression of 5946 genes in cancer and normal tissues
<p>The file contains GeneID, GeneType, symbol, logFC, FDR, RCI, OverallSurv, DiseaseFreeSurv information for 5946 genomes. Among them, FDR indicates false discovery rate;RCI indicates the logarithm of the ratio of concentration to nucleus (Log<sub>2</sub>), positive value indicates distribution in cytoplasm, negative value indicates distribution in nucleus; 0 in OverallSurv and DiseaseFreeSurv indicates insignificant, 1 indicates significant.</p>
Supplementary Tables 1 2 3 for AJP-GLP
<p><strong>Supplementary Table 1. Differentially expressed genes in the livers of male CC mice fed a HF/HS diet as compared to control diet fed CC mice.</strong></p> <p><strong>Supplementary Table 2. Correlation of gene expression and osmium tetroxide staining in the liver of CC mice fed a HF/HS diet and control diet (Pearson coefficient r ≥ |0.5|).</strong></p> <p><strong>Supplementary Table 3. Differentially methylated CpG sites in the livers of male CC mice fed a HF/HS diet as compared to control (p < 0.05).</strong></p>
Species of Acantholichen occurring only in the Neotropics show a high degree of endemism (Dal Forno et al. 2016). Of the seven species now recognized in this genus (Table 2), 71.4% (5) are known only from South America. As with Dictyonema, Acantholichen seem to be specific to substrate type and appears in the Andean small forest occurring on mosses in tree bark inhabiting mostly exposed habitats. Cyphellostereum is also represented by a high number of species restricted to the Neotropics [6 (66.6%)], while one is known only from North America, one from Southeastern United States and Puerto Rico, and another species is known only from Borneo and Fiji (Table 2). It is probably due to their unusual appearance that these lichens are getting confused with free-living cyanobacteria colonies, and that there are still undescribed species in the Neotropics. in Eight new species of lichenized Basidiomycota in the genera Acantholichen, Cyphellostereum and Dictyonema s.str. (Agaricales, Hygrophoraceae) from northern South America
Species of Acantholichen occurring only in the Neotropics show a high degree of endemism (Dal Forno et al. 2016). Of the seven species now recognized in this genus (Table 2), 71.4% (5) are known only from South America. As with Dictyonema, Acantholichen seem to be specific to substrate type and appears in the Andean small forest occurring on mosses in tree bark inhabiting mostly exposed habitats. Cyphellostereum is also represented by a high number of species restricted to the Neotropics [6 (66.6%)], while one is known only from North America, one from Southeastern United States and Puerto Rico, and another species is known only from Borneo and Fiji (Table 2). It is probably due to their unusual appearance that these lichens are getting confused with free-living cyanobacteria colonies, and that there are still undescribed species in the Neotropics.
data on life table and biology of Brevicoryne brassicae and Lipaphis pseudobrassicae
<p>A file on the biology and another on the life table and fertility of Brevicoryne brassicae and Lipaphis pseudobrassicae. The Life Table and Fertility Archive is a program for obtaining results called "Tabvida". The handbook for understanding the program can be obtained at the link: https://www.embrapa.br/busca-de-publicacoes/-/publicacao/870882/tabvida-sistema-computacional-para-calculo-de-parametros-biologicos- aphid-population-growth-and</p>
FIGURE. Results of discriminant function analysis (DFA) for C. repens and their putative parental species. Characters abbreviated as in Table 2. A. Carex brizoides (br), C. repens (re) and C. disticha (di). Loadings for the first axis (only absolute values>0.50 are given): IL = -0.50. Loadings for the second axis (only absolute values>0.50 are given): CLW = 0.61, IL = -0.71, SN = 0.74. B. Carex arenaria (ar), C. repens (re) and C. disticha (di). Loadings for the first axis (only absolute values>0.50 are given): CL = 0.89, IL = -0.63, SN = 0.51. Loadings for the second axis: CLW = 0.83, IL = -0.70, SN = 0.59. C. Carex arenaria (ar), C. repens (re) and C. brizoides (br). Loadings for the first axis (only absolute values> 0.50 are given): CL = -0.83. Loadings for the second axis: CL = -0.61. in Carex section Ammoglochin (Cyperaceae) in Poland
FIGURE. Results of discriminant function analysis (DFA) for C. repens and their putative parental species. Characters abbreviated as in Table 2. A. Carex brizoides (br), C. repens (re) and C. disticha (di). Loadings for the first axis (only absolute values>0.50 are given): IL = -0.50. Loadings for the second axis (only absolute values>0.50 are given): CLW = 0.61, IL = -0.71, SN = 0.74. B. Carex arenaria (ar), C. repens (re) and C. disticha (di). Loadings for the first axis (only absolute values>0.50 are given): CL = 0.89, IL = -0.63, SN = 0.51. Loadings for the second axis: CLW = 0.83, IL = -0.70, SN = 0.59. C. Carex arenaria (ar), C. repens (re) and C. brizoides (br). Loadings for the first axis (only absolute values> 0.50 are given): CL = -0.83. Loadings for the second axis: CL = -0.61.
FIGURE. Results of discriminant function an alysis (DFA) for C. brizoides (br), C. curvata (cu) and C. praecox (pr). Characters abbreviated as in Table 2. A. Reproductive characters. Loadings for the first axis (only absolute values>0.50 are given): LB = 0.63, LN = -0.93, WN = 0.94, LN/WN = 1.13, FGL = -0.62. Loadings for the second axis: WW = -0.76, LB = 1.51, LN = 2.21, WN = -1.79, LN/WN = -1.48, FGL = 0.55, FGW = -0.51. B. Vegetative characters. Loadings for the first axis (only absolute values>0.50 are given): CLL = -0.58. Loadings for the second axis: CW = -0.72, IL = -0.78. in Carex section Ammoglochin (Cyperaceae) in Poland
FIGURE. Results of discriminant function an alysis (DFA) for C. brizoides (br), C. curvata (cu) and C. praecox (pr). Characters abbreviated as in Table 2. A. Reproductive characters. Loadings for the first axis (only absolute values>0.50 are given): LB = 0.63, LN = -0.93, WN = 0.94, LN/WN = 1.13, FGL = -0.62. Loadings for the second axis: WW = -0.76, LB = 1.51, LN = 2.21, WN = -1.79, LN/WN = -1.48, FGL = 0.55, FGW = -0.51. B. Vegetative characters. Loadings for the first axis (only absolute values>0.50 are given): CLL = -0.58. Loadings for the second axis: CW = -0.72, IL = -0.78.
FIGURE. Results of discriminant function analysis (DFA) for C. arenaria (ar), C. colchica (co) and C. praecox (pr). Characters abbreviated as in Table 2. A. Reproductive characters. Loadings for the first axis (only absolute values>0.50 are given): LW = -0.53, LN = -1.53, WN = 2.40, LN/WN = 2.13. Loadings for the second axis: LN = -0.56. B. Vegetative characters. Loadings for the first axis (only absolute values>0.50 are given): IL = 0.62. Loadings for the second axis: CW = 0.86, CLL = 0.78, CLW = -0.65. in Carex section Ammoglochin (Cyperaceae) in Poland
FIGURE. Results of discriminant function analysis (DFA) for C. arenaria (ar), C. colchica (co) and C. praecox (pr). Characters abbreviated as in Table 2. A. Reproductive characters. Loadings for the first axis (only absolute values>0.50 are given): LW = -0.53, LN = -1.53, WN = 2.40, LN/WN = 2.13. Loadings for the second axis: LN = -0.56. B. Vegetative characters. Loadings for the first axis (only absolute values>0.50 are given): IL = 0.62. Loadings for the second axis: CW = 0.86, CLL = 0.78, CLW = -0.65.
FIGURE. Results of discriminant function analysis (DFA) for the reproductive characters of the Ammoglochin taxa. A—along axes DF1 and DF2; B—along axes DF1 and DF3. Characters abbreviated as in Table 2). Loadings for the first axis (only absolute values>0.50 are given: LN = 1.09, WN = -1.57, LN/WN = -1.59, FGL = 0.74. Loadings for the second axis: UL/UW = 0.57, LW = 0.71, WW = 0.52. Loadings for the third axis: UL = -0.73, UW = 1.56, UL/UW = 0.92, LN = -2.76, WN = 2.53, LN/WN = 2.14. ar—C. arenaria, br—C. brizoides, co—C. colchica, cu—C. curvata, pr—C. praecox, ps—C. pseudobrizoides. in Carex section Ammoglochin (Cyperaceae) in Poland
FIGURE. Results of discriminant function analysis (DFA) for the reproductive characters of the Ammoglochin taxa. A—along axes DF1 and DF2; B—along axes DF1 and DF3. Characters abbreviated as in Table 2). Loadings for the first axis (only absolute values>0.50 are given: LN = 1.09, WN = -1.57, LN/WN = -1.59, FGL = 0.74. Loadings for the second axis: UL/UW = 0.57, LW = 0.71, WW = 0.52. Loadings for the third axis: UL = -0.73, UW = 1.56, UL/UW = 0.92, LN = -2.76, WN = 2.53, LN/WN = 2.14. ar—C. arenaria, br—C. brizoides, co—C. colchica, cu—C. curvata, pr—C. praecox, ps—C. pseudobrizoides.
FIGURE. Results of discriminant function analysis (DFA) for the vegetative characters of the Ammoglochin taxa. A—along axes DF1 and DF2; B—along axes DF1 and DF3. Characters abbreviated as in Table 2. Loadings for the first axis (only absolute values>0.50 are given): SN = 0.57. Loadings for the second axis: CL = -0.91, IL = 0.54. Loadings for the third axis: CW = 0.62, CLL = -0.52, CLW = -0.89, IL = 0.51. ar—C. arenaria, br—C. brizoides, co—C. colchica, cu—C. curvata, pr—C. praecox, ps—C. pseudobrizoides, re—C. repens. in Carex section Ammoglochin (Cyperaceae) in Poland
FIGURE. Results of discriminant function analysis (DFA) for the vegetative characters of the Ammoglochin taxa. A—along axes DF1 and DF2; B—along axes DF1 and DF3. Characters abbreviated as in Table 2. Loadings for the first axis (only absolute values>0.50 are given): SN = 0.57. Loadings for the second axis: CL = -0.91, IL = 0.54. Loadings for the third axis: CW = 0.62, CLL = -0.52, CLW = -0.89, IL = 0.51. ar—C. arenaria, br—C. brizoides, co—C. colchica, cu—C. curvata, pr—C. praecox, ps—C. pseudobrizoides, re—C. repens.
FIGURE. Results of discriminant function analysis (DFA) for C. arenaria (ar), C. pseudobrizoides (ps) and C. brizoides (br). Characters abbreviated as in Table 2. A. Reproductive characters. Loadings for the first axis (only absolute values>0.50 are given): UL/UW = 0.79, LN = -0.72, WN = 1.33, LN/WN = 1.45, FGL = -0.72. Loadings for the second axis: UW = -1.37, UL/UW = -0.55, LN = 2.13, WN = -2.07, LN/WN = -1.45. B. Vegetative characters. Loadings for the first axis (only absolute values>0.50 are given): CL = -0.76, IL = 0.82. Loadings for the second axis: CL = 0.57, SN = 0.68, LSL = 0.79. in Carex section Ammoglochin (Cyperaceae) in Poland
FIGURE. Results of discriminant function analysis (DFA) for C. arenaria (ar), C. pseudobrizoides (ps) and C. brizoides (br). Characters abbreviated as in Table 2. A. Reproductive characters. Loadings for the first axis (only absolute values>0.50 are given): UL/UW = 0.79, LN = -0.72, WN = 1.33, LN/WN = 1.45, FGL = -0.72. Loadings for the second axis: UW = -1.37, UL/UW = -0.55, LN = 2.13, WN = -2.07, LN/WN = -1.45. B. Vegetative characters. Loadings for the first axis (only absolute values>0.50 are given): CL = -0.76, IL = 0.82. Loadings for the second axis: CL = 0.57, SN = 0.68, LSL = 0.79.
FIGURE. Results of discriminant function analysis (DFA) for C. arenaria (ar), C. brizoides (br) and C. praecox (pr). Characters abbreviated as in Table 2): A. Reproductive characters. Loadings for the first axis (only absolute values>0.50 are given): UL = 0.53, UL/UW = -0.56, LN = 1.37, WN = -2.23, LN/WN = -2,03, FGL = 0.56. Loadings for the second axis: UL/UW = 0.79, LW = 0.61, LN = -0.87, WN = 0.90, LN/WN = 0.87. B. Vegetative characters. Loadings for the first axis (only absolute values>0.50 are given): CL = -0.54, IL = 0.72. Loadings for the second axis: CLL = -0.73. in Carex section Ammoglochin (Cyperaceae) in Poland
FIGURE. Results of discriminant function analysis (DFA) for C. arenaria (ar), C. brizoides (br) and C. praecox (pr). Characters abbreviated as in Table 2): A. Reproductive characters. Loadings for the first axis (only absolute values>0.50 are given): UL = 0.53, UL/UW = -0.56, LN = 1.37, WN = -2.23, LN/WN = -2,03, FGL = 0.56. Loadings for the second axis: UL/UW = 0.79, LW = 0.61, LN = -0.87, WN = 0.90, LN/WN = 0.87. B. Vegetative characters. Loadings for the first axis (only absolute values>0.50 are given): CL = -0.54, IL = 0.72. Loadings for the second axis: CLL = -0.73.
Supplementary Table 1
<p><em>Supplementary Table of accepted manuscript titled "</em><strong>TiO<sub>2</sub> nanoparticles alleviates the effects of drought stress in tomato seedlings"</strong></p>
Results and assumptions for: Modeling the Circular Economy in Environmentally Extended Input-Output Tables: methods, software and case study
<p>This dataset presents supplementary information for <em>"Modeling the Circular Economy in Environmentally Extended Input-Output Tables: methods, software and case study" </em><a href="https://doi.org/10.1016/j.resconrec.2019.104508">https://doi.org/10.1016/j.resconrec.2019.104508</a></p> <p>The data was processed and results were obtained through https://cmlplatform.github.io/pycirk/</p> <p> </p> <p><br> Annex I: Scenario assumptions and modeling choices and complete results (file Annex_I.xlsx) <br> Annex II: Contains analysis of other software, database modifications, and list of affected categories (file Annex_II.docx) <br> Results: settings, assumptions, results and their analysis from the case study presented in the paper (file Donati_CE_EEIO_Mo_SI.tar.gz)</p>
Table S4
<p>manuscript supplementary table</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.