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328 results for “Analysis results”
Raw data for the submitted manuscript entitled "Prospective Scenarios for Addressing the Agricultural Plastic Waste Issue: Results of a Territorial Analysis"
<p><span>Agricultural activities have been positively affected by the use of plastic products, but this has resulted in the production of plastic waste and led to an increase in environmental pollution. </span><span>This file concerns plastic waste indices to different crop types and plastic products allowed quantifying and georeferencing actual plastic waste production. Two improved scenarios were considered, the first consisted of extending the lifespan of some plastics, and the second entailed the introduction of some biodegradable alternatives. </span></p>
User Stories made by Users Workshop Analysis Results
<p>In order to enable members of a socio-technical evolutionary-teal organization to design their technical component, we conducted a workshop that structures the collaboration between technical trained participants and non-trained participants. The workshop aims to transform "vague needs" into technical descriptions in the form of user stories.</p> <p>The workshop is the second part of series of workshops all limited to two hours. It uses the methods of <em>Design Thinking</em> and <em>Participatory Design</em>.</p> <p>The workshop has been recorded in video and the resulting data set has been published on Zenodo:</p> <p>Sell, Johann, & John, Elias. (2020). User Stories made by Users Workshop Data Set (1.0.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.3898358</p> <p>A qualitative analyzes has been conducted covering four iterations of coding. This data set shows the results of last iteration and the resulting insights are referenced by a research paper that is currently under review.</p> <p>We hope that the material can be used to (a) comprehend the interpretation used in our qualitative research, and to (b) investigate other interesting research questions.</p>
GWAS Summary Statistics from "Sex and statin-related genetic associations at the PCSK9 gene locus – results of genome-wide association meta-analysis"
<p>GWAMA summary statistics of PCSK9 levels stratified by sex and statin useage in Europeans.</p> <p>When using this data, please cite:</p> <p>Pott, J., Kheirkhah, A., Gadin, J.R. <em>et al.</em> Sex and statin-related genetic associations at the <em>PCSK9</em> gene locus: results of genome-wide association meta-analysis. <em>Biol Sex Differ</em> <strong>15</strong>, 26 (2024). https://doi.org/10.1186/s13293-024-00602-6</p> <p>All txt files contain the following columns:</p> <ul> <li>markername (unique SNP ID)</li> <li>chr</li> <li>bp_hg19 (base position according to hg19)</li> <li>EA (effect allele)</li> <li>OA (other allele)</li> <li>EAF (effect allele frequency)</li> <li>info (minimal info score across all used studies)</li> <li>nSamples (sample size per SNP)</li> <li>nStudies (in case of double-stratified data: number of studies; in case of single-stratified data: 2, as it is a meta-analysis of the two double-stratified data sets)</li> <li>beta (effect estimate)</li> <li>SE (standard error)</li> <li>pval (p-value)</li> <li>I2 (SNP heterogeneity across studies)</li> <li>invalidAssoc (TRUE/FALSE flag if this variant was excluded in our analysis)</li> <li>reason4exclusion (reason why this SNP was excluded)</li> <li>phenotype (phenotyp setting)</li> </ul>
Datasets and results from: "Random Forest Classification and Solar Flares Data: Analysis and Validation"
<p><strong>Instructions for the data and code repository</strong></p> <p>Results, post-processing workflow, and datasets for the research paper titled "Random Forest Classification and Solar Flares Data: Analysis and Validation".</p> <p>The folder contains three .csv files: the complete dataset (dataset.csv), the balanced training dataset (train_dataset.csv), and the testing dataset (test_dataset.csv).</p> <p>The folder also contains the result files from the research (.csv output files with predictions and .html files with evaluation metrics, etc.) exported from the JASP software. The number in each file name corresponds to the number of trees utilized in Random Forest modelling.</p> <p>In addition, the Python script for the post-processing workflow is provided, with comments located in the script.</p> <p>The soft range X-ray irradiance and VLF amplitude data were obtained from:<br> National Centers for Environmental Information (NCEI) Available online: https://www.ncei.noaa.gov/. Accessed on: 24th June 2023. <br> Worldwide archive of low-frequency data and observations (WALDO) Available online: https://waldo.world/. Accessed on: 24th June 2023.</p>
Test results and analysis of whitelisted URLs in Jammu and Kashmir, January 2020
<p><strong>Version 3: </strong>In this version, the tab entitled "New entries Jan 31 order" was added to version 2 of the spreadsheet. This tab contains new entries from the whitelist accompanying the order dated 31 January 2020 [Order number: Home-08 (TSTS) of 2020]. A separate tab was required because the "field" category present in previous versions of the whitelist was removed in the 31 January order. </p> <p><strong>Version 2:</strong> This dataset contains an analysis of a whitelist comprising 301 entries issued by the Home Department, Government of Jammu and Kashmir on 24 January 2020 [<a href="http://jkhome.nic.in/Home-05(tsts)%20of%202020_0001.pdf">Order number: Home-05 (TSTS) of 2020</a>]. The department issued an order with the first version of this whitelist in response to a Supreme Court judgement dated 10 January 2020 (<em><a href="https://indiankanoon.org/doc/82461587/">Anuradha Bhasin vs. Union of Indian and Ors</a>.</em>) that directed the Government of India to review the blanket suspension of Internet services in Jammu and Kashmir since 5 August 2019.</p> <p><strong>Version 1:</strong> The first version of the whitelist (dated <a href="https://www.scribd.com/document/443380803/Temporary-Suspension-of-Telecom-Services#download&amp;from_embed">18 January 2020</a>), and this dataset by extension, comprised 153 entries. The Home Department states in its orders that this whitelist will be continually updated; the next update may be issued on 31 January or earlier.</p> <p>This preliminary analysis was conducted by Rohini Lakshané and Prateek Waghre from 22 and 26 January 2020 IST, to empirically determine whether the whitelisted websites and services would be practically usable for an ordinary resident of Jammu and Kashmir at the time of writing.</p> <p>A Chrome browser extension was used to simulate access to only those URLs that are mentioned in the government order.</p> <p>A detailed description of the method, its limitations, and the full analysis of the findings was published on Medianama at <a href="https://www.medianama.com/2020/01/223-analysis-of-whitelisted-urls-in-jammu-and-kashmir-how-usable-are-they/">Even the 301 whitelisted sites in Jammu and Kashmir are not entirely accessible: An analysis </a>on 28 January 2020.</p> <p>For information on how to read this dataset, refer to the tab entitled "About this sheet". A numerical summary of the findings of this analysis is present in the tab entitled "Summary of findings".</p> <p>Data provided AS-IS, without warranty as to accuracy or completeness.</p> <p>This dataset has been released under the <a href="https://creativecommons.org/licenses/by-sa/4.0/legalcode">Creative Commons-Attribution-Share Alike (CC-BY-SA) 4.0 International License</a>. All uses of the accompanying data and modifications and derivatives thereof must contain the following attribution: "By Rohini Lakshané and Prateek Waghre (2020)".</p> <p>All versions have been uploaded in 3 file formats: PDF, XLSX and ODS.</p>
Figures S1-S7. SMR-HEIDI analysis results for 8q24.21 locus between BP and selected phenotypes.
<p><strong>Supplementary Figures S1-S7. </strong><strong>SMR-HEIDI analysis results for rs6651255 between BP and selected phenotypes.</strong></p> <p>This project contains the following figures:</p> <ul> <li> <p>Figure S1. SMR-HEIDI analysis results for rs6651255 between BP and LDH.</p> </li> <li> <p>Figure S2. SMR-HEIDI analysis results for rs6651255 between BP and <em>GSDMC</em> expression in skeletal muscle (GTEx v6).</p> </li> <li> <p>Figure S3. SMR-HEIDI analysis results for rs6651255 between BP and <em>FAM49B</em> expression in Brain anterior cingulate cortex BA24 (GTEx v6).</p> </li> <li> <p>Figure S4. SMR-HEIDI analysis results for rs6651255 between BP and <em>FAM49B</em> expression in CD8 cell line (CEDAR).</p> </li> <li> <p>Figure S5. SMR-HEIDI analysis results for rs6651255 between BP and heel bone mineral density (UKBB).</p> </li> <li> <p>Figure S6. SMR-HEIDI analysis results for rs6651255 between BP and disc problem phenotype (UKBB)</p> </li> <li> <p>Figure S7. SMR-HEIDI analysis results for rs6651255 between BP and height (UKBB).</p> </li> </ul> <p> </p> <p><strong>Figures legend:</strong></p> <p>Each figure consists of four parts (1 – top left; 2- top right; 3- bottom left; 4 – bottom right):</p> <ol> <li> <p>Regional association plots for GWAS-1 (in our case BP GWAS) and GWAS-2 (expression or complex trait). Blue triangles represent SNPs used to calculate HEIDI test. Crossed triangle is leading SNP for which SMR test was computed.</p> </li> <li> <p>Z-Z plot (GWAS-1 on y-axis and GWAS-2 on x-axis).</p> </li> <li> <p>Visualization of LD matrix for SNPs used in calculation of HEIDI test.</p> </li> <li> <p>Plot of SMR regression coefficient estimates. The plot visualizes the heterogeneity of SMR coefficient. Blue color represents SNPs used to calculate HEIDI test.</p> </li> </ol>
Processed data and analysis results for 104 RBPs
<p>This repository makes available the processed data and the results of our SURF paper. </p> <p>The paper presents the <strong>S</strong>tatistical <strong>U</strong>tility for <strong>R</strong>BP <strong>F</strong>unctions (SURF) for integrative analysis of RNA-seq and CLIP-seq data. The goal of SURF is to identify alternative splicing (AS), alternative transcription initiation (ATI), and alternative polyadenylation (APA) events regulated by individual RBPs and elucidate protein-RNA interactions governing these events. We applied the SURF pipeline to analyze 104 RBP data sets (from <a href="https://www.encodeproject.org">ENCODE</a>) and performed downstream analysis. Check out the browsable results from this <a href="http://www.statlab.wisc.edu/shiny/surf/">shiny</a> app!</p> <p>The current repository includes:</p> <ul> <li>meme.326.input.zip -- input of 326 MEME runs on SURF-inferred location features</li> <li>meme.326.output.zip -- output of 326 MEME runs on SURF-inferred location features</li> <li>surf_inferred_feature.gtf -- SURF-inferred location features for 52 RBPs</li> <li>gencode.v24.annotation.filtered.gtf -- filtered genome annotation used for ENCODE data analysis</li> <li>Homo_sapiens.GRCh37.71.primary_assembly.protein_coding.gtf -- genome annotation used for simulation study</li> <li>simulation_truth.txt -- truth parameters used for RNA-seq simulation</li> <li>[RBP].results.rds -- SURF output (each an R object) for 104 RNA-binding proteins ([RBP] the protein name). </li> </ul> <p>For reproducing the results, the source code is available at DOI: <a href="https://doi.org/10.5281/zenodo.3779853">10.5281/zenodo.3779853</a>.</p>
NAQPMS simulation results for analysis the effects of regional transport on haze in the North China Plain
<p>This directory contains data generated and used for paper "Effects of regional transport on haze in the North China Plain: transport of precursors or secondary inorganic aerosols".</p> <p>This dataset contains the observed and simulated aerosols components of Beijing and surrounding cities; regional sources of secondary inrganic aerosols in Beijing; sources of secondary inorganic aerosols under relative clean and polluted conditions; and average differences of regional contribution to secondary inorganic aerosols between clean and polluted conditions; and data for supporting figures.</p>
Simulation results for Sars-CoV2 3C-like main protease: TRAPP analysis of the binding site flexibility and results of the docking study
<p>Collection of data and scripts related to the paper:</p> <p>Jonas Gossen et al. "A blueprint for high affinity SARS-CoV-2 Mpro inhibitors from activity-based compound library screening guided by analysis of protein dynamics" </p> <p>https://www.biorxiv.org/content/10.1101/2020.12.14.422634v2 doi: https://doi.org/10.1101/2020.12.14.422634</p> <p>ACS Pharmacology and Translational Science 2021 DOI: 10.1021/acsptsci.0c00215</p> <p> </p> <p> </p> <p><strong>1. TRAPP simulation results for Sars-CoV2 3C-like main protease:</strong></p> <p>include simulation of the binding pocket druggability, physical-chemical properties, and the binding site composition</p> <p><a href="https://zenodo.org/api/files/f6c0a0ae-d53a-4e78-aaaf-b3ff674171a5/Protease_clean.ipynb">Protease_clean.ipynb</a> - Jupyter Notebook containing analysis of the generated data</p> <p><a href="https://zenodo.org/api/files/f6c0a0ae-d53a-4e78-aaaf-b3ff674171a5/allTables.zip">allTables.zip</a> - results of TRAPP simulations of the binding site flexibility using LRIP and tConcoord methods</p> <p><a href="https://zenodo.org/api/files/f6c0a0ae-d53a-4e78-aaaf-b3ff674171a5/Every10-ligand_6LU7_R3.5.zip">Every10-ligand_6LU7_R3.5.zip</a> - results of TRAPP pocket analysis on the MD frames</p> <p><a href="https://zenodo.org/api/files/f6c0a0ae-d53a-4e78-aaaf-b3ff674171a5/PDB-Giulia.zip">PDB-Giulia.zip</a> - TRAPP pocket analysis of 40 PDB complexes of main protease</p> <p><a href="https://zenodo.org/api/files/f6c0a0ae-d53a-4e78-aaaf-b3ff674171a5/TRAPP_properties_PDB.xlsx">TRAPP_properties_PDB.xlsx</a> - binding pocket properties for 40 PDB complexes of main protease summarized in a table</p> <p><a href="https://zenodo.org/api/files/f6c0a0ae-d53a-4e78-aaaf-b3ff674171a5/DrugPDB_3structures.xlsx">DrugPDB_3structures.xlsx</a> - binding pocket properties for 3 PDB structures </p> <p><strong>2. Docking & Screening Results</strong></p> <p><a href="https://zenodo.org/api/files/9165535d-aec5-4f1e-8ad1-6ca11a90e595/TRAPP_secondSelection_VS.csv">TRAPP_secondSelection_VS.csv</a> - docking/screening of selected structures from TRAPP analysis</p> <p><a href="https://zenodo.org/api/files/9165535d-aec5-4f1e-8ad1-6ca11a90e595/Fred_VS.csv">Fred_VS.csv</a> - docking of PDB structures using Fred</p> <p><a href="https://zenodo.org/api/files/9165535d-aec5-4f1e-8ad1-6ca11a90e595/Glide_VS.csv">Glide_VS.csv</a> - docking of PDB structures using Glide</p> <p><a href="https://zenodo.org/api/files/77b1679d-ccc9-4e30-add2-5f7420e04ed1/TableS1.xlsx">TableS1.xlsx</a> - Available structures of SARS-CoV-2 Mpro selected for binding site analyses. </p> <p><a href="https://zenodo.org/api/files/77b1679d-ccc9-4e30-add2-5f7420e04ed1/TableS2A.xlsx">TableS2A.xlsx</a> - SiteScore analysis of all the deposited X-ray crystal structures for the Mpro.</p> <p><a href="https://zenodo.org/api/files/77b1679d-ccc9-4e30-add2-5f7420e04ed1/TableS2B.xlsx">TableS2B.xlsx</a> - SiteScore analysis of the MSM ensemble (4-macrostates).</p>
Results from the OnStove Nepal model "Achieving Nepal's clean cooking ambitions: an open source and geospatial cost–benefit analysis"
<p>This repository includes all result datasets and figures from the <a href="https://github.com/Open-Source-Spatial-Clean-Cooking-Tool/OnStove-Nepal">OnStove Nepal</a> model presented in the paper "<strong>Achieving Nepal's clean cooking ambitions: an open source and geospatial cost–benefit analysis</strong>" DOI: <a href="https://doi.org/10.1016/S2542-5196(24)00209-2">https://doi.org/10.1016/S2542-5196(24)00209-2</a>.</p> <p>The code and automated workflow to run the model can be found in the Github repository <a href="https://github.com/Open-Source-Spatial-Clean-Cooking-Tool/OnStove-Nepal">https://github.com/Open-Source-Spatial-Clean-Cooking-Tool/OnStove-Nepal</a>. All model input data can be downloaded from the permanent repository at<em> </em><a href="https://doi.org/10.5281/zenodo.10641858">10.5281/zenodo.10641858</a>.</p> <h2>Folder structure</h2> <p>The folder structure consists of a <strong>Procedded GIS Data </strong>folder containing all GIS processed data. These are the outputs from the <strong>DataProcessor.ipynb </strong>script and the raw GIS input data files found in the input data repository.</p> <p>A folder for <strong>each scenario</strong> results. Within each scenario folder, there are:</p> <ul> <li>A <strong>model.pkl </strong>and a <strong>results.pkl </strong>files. These are a calibrated OnStove model with the scenario inputs and a complete results model file of the scenario respectively. Both of these files can be read and explored using the OnStove tool. </li> <li>A <strong>summary.csv </strong>file with the summary results of the scenario for each technology.</li> <li>A <strong>Subsidies_scenario_name.csv </strong>file showing the required total subsidies per technology of the scenario.</li> <li>Image files in pdf format for: <ul> <li>The baseline technologies used in the country (<strong>current_shares.pdf</strong>),</li> <li>The spatial mix of technologies providing the maximum net-benefits throughout the country (<strong>max_benefit_tech.pdf</strong>), </li> <li>The total costs and benefits of the transition per technology (<strong>costs_benefits.pdf</strong>),</li> <li>The bar plot of max benefit technology shares (<strong>tech_split.pdf</strong>),</li> <li>The max benefit technologies distribution over relative wealth in the country (<strong>tech_histogram.pdf</strong>),</li> </ul> </li> <li>A <strong>Rasters </strong>folder with raster files of different result maps in .tif format.</li> </ul> <p>Inside the <strong>MCA </strong>folder, all results from the prioritization analysis are found, including:</p> <ul> <li>The prioritized spatial technology mix to achieve the goals of the country (<strong>Prioritized_hh.pdf</strong>),</li> <li>The biogas cookstoves relative wealth distribution index (<strong>Biogas_index.pdf</strong>),</li> <li>The biomass ICS T3 cookstoves relative wealth distribution index (<strong>Biomass_ICS_T3_index.pdf</strong>),</li> <li>The electrical cookstoves relative wealth distribution index (<strong>Electricity_index.pdf</strong>),</li> <li>The biogas cookstoves priority map (<strong>Biogas_priority_areas.pdf</strong>),</li> <li>The biomass ICS T3 cookstoves priority map (<strong>Biomass_ICS_T3_priority_areas.pdf</strong>),</li> <li>The electrical cookstoves priority map (<strong>Electricity_priority_areas.pdf</strong>),</li> <li>The total costs and benefits of the transition per technology (<strong>costs_benefits.pdf</strong>),</li> <li>The prioritized technology shares distribution over relative wealth in the country (<strong>tech_histogram_prioritized.pdf</strong>),</li> <li>A <strong>Subsidies_prioritized.csv </strong>file showing the required total subsidies per technology,</li> <li>A <strong>mca.pkl </strong>file with the MCA model that can be manipulated using the OnStove tool,</li> <li>A <strong>access_results.txt </strong>file with the current and after prioritization clean cooking access shares in the country.</li> </ul> <p>A <strong>main_plot.pdf </strong>and a <strong>prioritized_plot.pdf </strong>files showing the compiled results for all scenarios and prioritized scenario respectively.</p> <h2>License</h2> <p>All datasets are released under the <a href="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a> (CC BY 4.0).</p>
Local risks from Arctic permafrost thaw – Results from a transdisciplinary, comparative analysis
<p>This dataset underpins the findings of a transdisciplinary and comparative assessment of permafrost thaw risks across four distinct Arctic regions: Longyearbyen (Svalbard, Norway), the Avannaata Municipality (Greenland), the Beaufort Sea region and Mackenzie River Delta (Canada), and the Bulunskiy District of the Sakha Republic (Yakutiya, Russia). Information on permafrost thaw risks was gathered from multiple disciplines and stakeholders over a five-year period from 2019 to 2023, and classified via thematic network analysis (Attride-Stirling, 2001). The identified risks were subsequently verified and ranked by scientists and local experts through an iterative process and a series of workshops (see Ingeman-Nielsen et al., 2024 in Related Works).</p> <p>The dataset contains the results of the thematic network analysis and ranking of permafrost thaw risks specific to each Arctic region. Provided as an .xlsx file, it consists of six main sheets comprising the following information:</p> <ul> <li>Global theme - Physical Processes</li> <li>Ranking - Physical Processes</li> <li>Global theme - Key Hazards</li> <li>Global theme - Societal Consequences</li> <li>Ranking - Consequences</li> <li>List of Actions Needed</li> </ul> <p>Additional details about the methodological approach and dataset can be found in the accompanying README document.</p> <p> </p>
Quantitative results of the analysis of human bioengineered tissues corresponding to the work "Development of novel squid gladius biomaterials for cornea tissue engineering"
<p>This dataset corresponds to the quantitative data generated in the work entitled "Development of novel squid gladius biomaterials for cornea tissue engineering".</p> <p>Cornea tissue engineering is strictly dependent on the development of biomaterials fulfilling the strict biocompatibility, biomechanical and optical requirements of this organ. In this work, we have generated novel biomaterials from the squid gladius (SG) and their application in cornea tissue engineering was evaluated. Results revealed that the native SG (N-SG) was biocompatible in laboratory animals, although a local inflammatory reaction was driven by the material. Cellularized biomaterials (C-SG) demonstrated that the SG provides an adequate substrate for cell attachment and growth, and corneal epithelial cells cultured on this biomaterial were able to express crystallin alpha, a marker for this type of cells. Biomechanical analyses showed that N-SG biomaterials have higher Young modulus and lower traction deformation than control native corneas (CTR), and C-SG showed similar Young modulus than CTR. Analysis of the optical properties of these samples revealed that the diffuse transmittance of N-SG and C-SG were higher than CTR, with the diffuse reflectance showing the opposite behavior. These results confirm the putative usefulness of this abundant marine-derived biomaterial that can be obtained as a byproduct of the fishing industry.</p>
The 2020 Comparison of Tools for the Analysis of Quantitative Formal Models: Results and Reproduction
<p>This archive contains detailed results from QComp 2020 as well as the necessary scripts and data to reproduce them.</p> <p>Visit http://qcomp.org for more information for QComp.</p> <p>Overview of Contents</p> <p>- `qcomp.org/` contains the state of our website from the timepoint of the competition. This includes:<br> - All benchmark files, browsable at `qcomp.org/benchmarks/index.html`<br> - Detailed competition results in a human-readable format, browsable at `https://qcomp.org/competition/2020/`<br> - `logs/` contains the raw logfiles and data gathered by our scripts<br> - `scripts/` contains scripts to replicate the whole competition<br> - `toolpackages/` contains a package for each participating tool which includes<br> - Instructions for obtaining and installing the tool<br> - a file `invocations.json` listing the commandlines used in QComp 2020<br> - a file `tool.py` providing functionalities to obtain the result from the tool output.</p>
Datasets and results of the paper titled "Are citation networks relevant to explain academic promotions? An empirical analysis of the Italian national scientific qualification"
<p>These are the <strong>input datasets</strong> and the <strong>results of the analyses</strong> reported on the paper titled <strong>"Are citation networks relevant to explain academic promotions? An empirical analysis of the Italian national scientific qualification"</strong>.</p> <p><strong>Abstract:</strong> </p> <p>The aim of this paper is to study the role of citation network measures in the assessment of scientific maturity. Referring to the case of the Italian national scientific qualification (ASN), we investigate if there is a relationship between citation network indices and the results of the researchers’ evaluation procedures. In particular, we want to understand if network measures can enhance the prediction accuracy of the results of the evaluation procedures beyond basic performance indices. Moreover, we want to highlight which citation network indices prove to be more relevant in explaining the ASN results, and if quantitative indices used in the citation-based disciplines assessment can replace the citation network measures in non-citation-based disciplines. Data concerning Statistics and Computer Science disciplines are collected from different sources (ASN, Italian Ministry of University and Research, and Scopus) and processed in order to calculate the citation-based measures used in this study. Following, we apply classification models to estimate the effects of network variables. We find that network measures are strongly related to the results of the ASN and significantly improve the explanatory power of the models, especially for the research fields of Statistics. Additionally, citation networks in the specific sub-disciplines are far more relevant than those in the general disciplines. Finally, results show that the citation network measures are not a substitute of the citation-based bibliometric indices.</p> <p><strong>Code</strong></p> <p>The code to collect and process the data used in this paper is available on GitHub at <a href="https://github.com/DigitalDataLab/ASN16-18_CitationNetwork">https://github.com/DigitalDataLab/ASN16-18_CitationNetwork</a><strong>.</strong> </p> <p><strong>Dataset description</strong></p> <p>The files <strong>AdjacencyMatrix_01B1.csv</strong>, <strong>AdjacencyMatrix_09H1.csv</strong>, <strong>AdjacencyMatrix_13D1.csv</strong>, <strong>AdjacencyMatrix_13D2.csv</strong> and <strong>AdjacencyMatrix_13D3.csv</strong> are the citation matrices for Italian academics (i.e. ASN candidates and permanent positions in the Italian academic system) in the Recruitment Fields (RFs) 01/B1, 09/H1, 13/D1, 13/D2 and 13/D3, respectively.</p> <p>The files <strong>AdjacencyMatrix_CS.csv</strong> and <strong>AdjacencyMatrix_ST.csv</strong> are the citation matrices for the Italian academics in the Computer Science disciplines (i.e. RFs 01/B1 and 09/H1) and the Statistical disciplines (i.e. RFs 13/D1, 13/D2 and 13/D3), respectively.</p> <p>The files <strong>CS_01B1_1.csv, CS_09H1_1.csv, ST_13D1_1.csv, ST_13D2_1.csv</strong> and <strong>ST_13D3_1.csv</strong> contain the data used to build the logistic regression models presented in the paper for the Italian academics at the Full Professor (FP) level.</p> <p>The files <strong>CS_01B1_2.csv, CS_09H1_2.csv, ST_13D1_2.csv, ST_13D2_2.csv</strong> and <strong>ST_13D3_2.csv</strong> contain the data used to build the logistic regression models presented in the paper for the Italian academics at the Associate Professor (AP) level.</p> <p>The file <strong>Codebook.pdf</strong> is the codebook of the previous ten files.</p> <p>The file <strong>Appendix.pdf</strong> contains the final results of the stepwise logistic regressions computed for each level (i.e. Full Professor and Associate Professor) and Recruitment Field in the Computer Science and Statistics disciplines.</p> <p>The file <strong>NormalityAssessment.pdf</strong> contains the normality assessment of citation network indices. </p>
SciKGTeX Scientific Contribution Metadata LaTeX Package User Evaluation Results & Analysis
<p>The responses and measured variables from 26 participants of the first user test of the SciKGTeX package.</p> <p><a href="https://github.com/Christof93/SciKGTeX">https://github.com/Christof93/SciKGTeX</a></p> <p>Also the raw text source for the evaluation tasks and the result analysis notebook with the results saved as tsv file.</p>
Crystallization process of organic-inorganic methylammonium lead bromide perovskite (MAPbBr3), GIXD analysis results: diffraction features and crystal structure
<p>Analysis result of an <em>in-situ</em> measurement of the crystallization process of organic-inorganic methylammonium lead bromide perovskite (MAPbBr3) on a glass substrate.</p> <p>This dataset contains the positions, sizes, and integrated intensities of extracted diffraction peaks with 0.1s time resolution.</p> <p>For crystal structure matching, the provided CIF file (CCDC 1446529) was used.</p>
Meta-analysis results of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight
<p>Birthweight is associated with health outcomes across the life course, DNA methylation may be an underlying mechanism. In this meta-analysis of epigenome-wide association studies of 8,825 neonates from 24 birth cohorts in the Pregnancy And Childhood Epigenetics Consortium, DNA methylation in neonatal blood is associated with birthweight at 914 sites, with a difference in birthweight ranging from -183 to 178 grams per 10% increase in methylation (P<sub>Bonferroni</sub><1.06x10<sup>-7</sup>).</p>
Deliverable 1.1.1.1 BEL-Float project | Dataset containing the results of numerical simulations (motions, forces) of the operational performance analysis - Input files
<p>This dataset contains the parent input used to generate the simulation files of the DeepCwind OC4 semi-submersible combined with the 5MW NREL turbine for various wind and wave conditions. The basis of the OpenFAST input files are taken from <a href="https://github.com/OpenFAST/r-test/tree/main/glue-codes/openfast/5MW_OC4Semi_WSt_WavesWN">OpenFAST r-test GitHub repository (5MW_OC4Semi_WSt_WavesWN)</a> and adapted to simulate various wind and wave conditions. The turbulent wind field as the input to the InflowWind module is generated using <a href="https://www.nrel.gov/wind/nwtc/turbsim.html">TurbSim</a>. The simulations are performed on a modified version of OpenFAST v3.5.3 to which adaptation to the code is made to extract additional Morison drag output up to 16 cylindrical members. This adapted code is <a href="https://github.com/abkpribadi/openfast/tree/Morison_additional_output">uploaded on GitHub as a branch from a forked OpenFAST repository</a>. In total there are 1152 simulation results consists of 768 irregular waves and 384 regular waves cases. The complete dataset is divided into 9 sub-datasets, see "Related work" section. A report describing this dataset will be made available on BEL-Float project website by November 2024: https://www.owi-lab.be/bel-float.</p>
Datasets containing the results from the analysis on SDGS and eHealth inside the Citizen Science Community on Twitter
<p>This datasets contain the results from our analyses of the Citizen Science Community on Twitter. These analyses have been done to better understand the discussion about SDGs, eLearning and eHealth.</p> <p><strong>T</strong>he purpose of sharing these datasets is to provide the basis to reproduce the results reported in the associated deliverable. These files are not raw data, since due to privacy concerns we can not share personal information from Twitter.</p> <p><strong>dominant_topics_anonym.xlsx</strong>: Excel datasheet. This dataset contians the distribution of the most discussed topics inside the SDGs discussion.</p> <p><strong>Edges_Hashtag_connected.csv</strong>: CSV file. This dataset contains the edges to build the network of connected hashtags. This edges can be used to build a network and explore the connections or to statiscally analyse the results.</p> <p><strong>hashtags.csv</strong>: CSV file. This dataset contains the results of the most used hashtags in the analysis about eLearning. <br> </p> <p><strong>hashtags_treemap_health.xlsx</strong>: Excel datasheet. This dataset contains the results of the most frequent hashtags in the eHealth analysis.</p> <p><strong>ldavis_prepared_ieee17.html</strong>: HTML file. This file contains the Intertopic distance map and most salient terms from the topic modelling analysis done in the SDGs conversation study.</p> <p><strong>Most_retweeted_accounts.xlsx</strong>: Excel datasheet. This dataset contains the top 20 users that receive more retweets in the conversation around eHealth. The column called Indegree refers to the topological value calculated from the network of retweets. This indegree is equivalent to the number of retweets received. On the other hand, Outdegree is the opposite, so number of retweets given to others.</p> <p><strong>Most_retweeting_account.xlsx</strong>: Excel datasheet. This dataset presents the opposite part of the previous one, the accounts that retweet the most from the eHealth analysis. The columns contain the same indicators: Indegree and Outdegree.</p> <p><strong>sdgs_count_publish.csv</strong>: CSV file. This dataset contains the number of tweets assigned to the different SDGs from the analysis done on the conversation about these Goals.</p> <p><strong>sdgs_tweets_sdgsaccess.xlsx</strong>: Excel datasheet. Same file as the previous one in other format to ease the handling in Excel.</p> <p><strong>top_hash_health.xlsx</strong>: Excel datasheet. The most used hashtags inside the conversation about eHealth.</p> <p><strong>topics_tweets_sdgsaccess.xlsx</strong>: Excel datasheet. Tweets by topic extracted using Machine Learning in the SDGs analysis.</p> <p> </p> <p>This repository will receive updates in the future in order to present all the data available and publishable from the different analysis that were described.</p>
Result dataset for our experimental analysis on multi-cepstral projection representation strategies for dysphonia detection
<p>Database containing the results of the analyzed versions of the framework proposed in our paper submitted to the journal Sensors (Basel) under the title "An experimental analysis on multi-cepstral projection representation strategies for dysphonia detection".</p> <p>In this database, we have the following information:</p> <p>"gender": Gender of individuals referring to the selected voice database. For this field, we have the following possible values: “male” for a selection of male individuals, “female” for a selection of female individuals, and “both” for a selection considering both genders.</p> <p>“Techniques”: Concerns about the techniques for extracting cepstral coefficients that we are analyzing. The identifier “nonceps” refers to the use of non-cepstral features.</p> <p>“vowel”: Vowel considered in the database selection. The following values are possible: “a”, “i” and “u”.</p> <p>“intonation”: Tone used by individuals when pronouncing the analyzed vowel. Possible values are: “h” for high; “l” for low; “n” is normal; and “lhl” for low-high-low.</p> <p>“coordinates”: Number of coordinates that make up the feature vector that represents the voice signal after the dimensionality reduction routines.</p> <p>“scale”: Normalization function used on the feature vector. The possible values of this field are the following: “MinMax” for the min-max scale; “Robust” for the robust scale; “Standard” for the standard scale; and “Unscaled” for the unscaled vector.</p> <p>“ACC”: Accuracy obtained by the analyzed version on the considered voice database clipping.</p> <p>“AUC”: Area under the ROC curve obtained by the analyzed version on the considered voice database clipping.</p> <p>“EER”: Equal Error Rate obtained by the analyzed version on the considered voice database clipping.</p> <p>“F1”: F1-score obtained by the analyzed version on the considered voice database clipping.</p> <p>“EH”: Rate of healthy voice signals classified as pathological on the considered voice database clipping.</p> <p>“EP”: Rate of pathological voice signals classified as healthy on the considered voice database clipping.</p> <p>“KFCV”: Average accuracy score of a 5-fold Cross Validation over the training dataset on the considered voice database clipping.</p> <p>“Balancing”: Indication of the use of balancing technique (SMOTE) by the considered framework version.</p> <p>“Classifier”: Classifier used, being possible the use of Random Forest (RF), Logistic Regression (LR), and Support Vector Machine (SVM).</p> <p>“Multi-Projection”: Multi-projection strategies employed by the evaluated technique.</p> <p>“Features”: Type of feature that defines the feature vector. In this case, the following values are possible in this field: “NonCeps” for non-cepstral features; “Ceps” for cepstral features only; and “Ceps and NonCeps” for features of cepstral and non-cepstral types.<br> .</p> <p>It is worth noting that the symbol “-”, present in some fields, represents the “non-use” of any technique of the type indicated by the field. For example, in the case of the “Balancing” field, the value “-” means that no data balancing technique was used in the evaluated version of the framework.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.