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4 results for “Foldseek”
Foldseek Multimer
<h1>Rapid and Sensitive Protein Complex Alignment with Foldseek-Multimer</h1> <p>Advances in computational structure prediction will vastly augment the hundreds of thousands of currently-available protein complex structures. Translating these into discoveries requires aligning them, which is computationally prohibitive. Foldseek-Multimer computes complex alignments from compatible chain-to-chain alignments, identified by efficiently clustering their superposition vectors. Foldseek-Multimer is 3-4 orders of magnitudes faster than the gold standard, while producing comparable alignments; allowing it to compare dozens of billions of complex-pairs in a day. Foldseek-Multimer is open-source software: <a href="http://github.com/steineggerlab/foldseek">github.com/steineggerlab/foldseek</a> and webserver: <a href="http://search.foldseek.com/">search.foldseek.com</a>.</p> <p><strong>Notice</strong><br>This Zenodo release accompanies the <a href="https://github.com/steineggerlab/foldseek-multimer-analysis/tree/main">GitHub repository</a>, which contains both the analysis scripts as well as clarifications about the data in this release.<br><br></p>
FoldSeek database of Pfam Seeds
<p>The FoldSeek database of Pfam seeds has been created by chopping the full-length structure of proteins used as Pfam Seeds.</p>
The raw data needed for benchmarking the use of Foldseek for structure-based domain annotation
<p>For more information refer to:<br>https://github.com/Pooryamb/BenchmarkingFS </p>
Foldseek Multimer Test
<h1>Foldseek Multimer Test</h1> <p>Foldseek Multimer test</p>
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The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.