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1,268 results for “Melastomataceae”
Datasets for the Phylogenomic Study of the Fleshy-Fruited Sonerileae (Melastomataceae)
<p>This repository contains datasets used in the phylogenomic analysis of the fleshy-fruited Sonerileae (Melastomataceae). The data include various gene alignments, gene trees, and species trees.</p>
Figure 13 in Description, molecular phylogeny, and natural history of a new kleptoparasitic species of gelechiid moth (Lepidoptera) associated with Melastomataceae galls in Brazil
Figure 13. Seasonal abundance of cecidogenous (Palaeomystella fernandesi, dashed line) and kleptoparasite (Locharcha opportuna, solid line) larvae in galls (total = 164 and 169 individuals, respectively) induced on Tibouchina sellowiana plants at CPCN Pró-Mata, from April 2012 through June 2013. Arabic numbers from 1 to 14 represent 30-day sampling intervals. Upper horizontal bars indicate host plant phenological phases: red, flowering; green, fruiting; blue, dormancy; black, forming new shoots.
Figure 7 in Description, molecular phylogeny, and natural history of a new kleptoparasitic species of gelechiid moth (Lepidoptera) associated with Melastomataceae galls in Brazil
Figure 7. Locharcha opportuna pupa, in dorsal (A), ventral (B) and lateral (C) views, respectively. Scale bar = 1 mm.
A two-tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae
<p><b><i>Premise of the study</i></b><b>: </b>Putatively single-copy nuclear (SCN) loci, identified using genomic resources of closely related species, are ideal for phylogenomic inference. However, suitable genomic resources are not available for many clades, including Melastomataceae. We introduce a versatile approach to identify SCN loci for clades with few genomic resources and use it to develop probes for target enrichment<i> </i>in the distantly related <i>Memecylon</i> and <i>Tibouchina</i> (Melastomataceae).</p> <p><b><i>Methods</i></b>: We present a two-tiered pipeline. First, we identified putatively SCN loci using MarkerMiner and transcriptomes from distantly related species in Melastomataceae. Published loci and genes of functional significance were added (384 total loci). Second, using HybPiper, we retrieved 689 homologous template sequences for these loci using genome-skimming data from within the focal clades.</p> <p><b><i>Results</i></b>: We sequenced 193 loci from both <i>Memecylon</i> and <i>Tibouchina</i>, with probes designed from 56 template sequences successfully targeting sequences in both clades. Probes designed from genome-skimming data within a focal clade were more successful than probes designed from other sources.</p> <p><b><i>Discussion: </i></b>Our pipeline successfully identified and targeted SCN loci in <i>Memecylon </i>and <i>Tibouchina</i>, enabling phylogenomic studies in both clades and potentially across Melastomataceae. This pipeline could be easily applied to other clades with few genomic resources. </p>
Fig. 2 in Two new species of Sonerila Roxb. (Melastomataceae) from Laos
Fig. 2. Sonerila erectifolia Phonep., Soulad. & Tagane sp. nov. A. Habitat (on open moss-covered bedrock). B. Close-up of plant (left: pink flowers, common; right: white flowers, rare). C. Habit. D. Inflorescence (left: pink flowers; right: white flowers). E. Young fruits. F. Top view of young fruit. G. Cross sections of young fruit. H. Rhizome. I. Upper surface of lamina. J. Lower surface of lamina. Photos by P. Phonepaseuth on 17 September 2020.
Fig. 1 in Two new species of Sonerila Roxb. (Melastomataceae) from Laos
Fig. 1. Sonerila erectifolia Phonep., Soulad. & Tagane sp. nov. A. Habit. B. Front view of flower. C. Flower bud. D. Hypanthium and style. E. Stamens. Line drawings from holotype (Souladeth et al. L3950) by K. Souvannakhoummane.
Fig. 4 in Two new species of Sonerila Roxb. (Melastomataceae) from Laos
Fig. 4. Sonerila souvannii Phonep. & Soulad. sp. nov. A. Habitat (on sandstone rock). B. Habit. C. Petiole densely covered with villous hairs. D. Rhizome and stem with rudimentary leaves. E. Flowers. F. Inflorescence (scorpioid cyme). G. Lateral view of flower. H. Back view of flower. I. Longitudinal section of fruit. J. Top view of fruit. K. Cross section of fruit. L. Infructescence of the last season. Photos by P. Phonepaseuth on 12 September 2020.
Fig. 3 in Two new species of Sonerila Roxb. (Melastomataceae) from Laos
Fig. 3. Sonerila souvannii Phonep. & Soulad. sp. nov. A. Habit. B. Front view of flower. C. Petals. D. Hypanthium and style, with portion of pedicel. E. Cross section of ovary. F. Stamens. G. Style and stigma. H. Capsule. I. Rachis and minute bracts. Line drawings from holotype (Phonepaseuth P012) by K. Souvannakhoummane.
FIGURE 20. Miconia formicaria. A in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 20. Miconia formicaria. A. Habit, showing detail of formicarium at adaxial foliar base. B. Flower. C. Petal, abaxial view. D. Stamen, abaxial view (left), lateral view (right). E. Berry. F. Seed. Based on Almeda et al. 10274, CAS. Drawn by Sean V. Edgerton.
FIGURE 18. Miconia alatissima. A in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 18. Miconia alatissima. A. Habit, showing details of abaxial foliar surface. B. Flower. C. Stamen, abaxial view (left), lateral view (right) with detail of anther connective appendage. D. Style. Based on Rubio et al. 2176, MO. Drawn by Sean V. Edgerton.
FIGURE 26. Miconia veraguensis. A in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 26. Miconia veraguensis. A. Habit, showing detail of cauline internodes (top), abaxial foliar indumentum (bottom left), and abaxial foliar venation (bottom right). B. Berry, lateral view. C. Berry, top view. D. Seed. Based on Almedaet al. 6480, CAS. Drawn by Sean V. Edgerton.
FIGURE 15 in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 15. Distributions of Miconia laxivenula, M. magnifolia, M. neocoronata, M. neomicrantha and M. aff. neomicrantha.
FIGURE 14 in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 14. Distributions of Miconia erikasplundii and M. incerta, M. evanescens, M. formicaria and M. rufibarbis, and M. latidecurrens.
FIGURE 13 in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 13. Distributions of Miconia bensparrei and M. palenquensis, M. biolleyana, M. boekei, and M. bractiflora.
FIGURE 11 in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 11. Distributions of Miconia aguilarii, M. alatissima, M. albertobrenesii, and M. alboglandulosa.
FIGURE 19. Miconia anchicayensis. A in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 19. Miconia anchicayensis. A. Habit, showing detail of abaxial foliar base. B. Flower. C. Stamen, lateral view (left), abaxial view (right). D. Berry, top view (top), lateral view (bottom). E. Seed, from immature fruit. Based on Almeda et al. 10266, CAS. Drawn by Sean V. Edgerton.
FIGURE 12 in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 12. Distributions of Miconia anchicayensis and M. chocoensis, M. approximata, M. atropurpurea, M. aurantiaca and M. aff. aurantiaca.
FIGURE 16 in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
FIGURE 16. Distributions of Miconia quadridomius and M. veraguensis, M. quinquenervia, M. radicans, and M. reitziana.
PLATE 2 in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
PLATE 2. SEM images of representative seeds found in the Approximata subclade. A–D. Seeds in lateral symmetrical plane. a–d. Detail of testa cells and cell wall microrelief. A, a. M. approximata (Hammel 12238, CAS). B, b. M. chocoensis (Killip & García 33520, US). C, c. M. evanescens (Croat 68018, CAS). D, d. M. veraguensis (Almeda et al. 6480, CAS). Scale bars: A, C=100µm; B, D=200 µm; a–c=20µm, d=15µm. SEM images taken by Diana Gamba.
PLATE 4 in Systematics of the Octopleura Clade of Miconia (Melastomataceae: Miconieae) in Tropical America
PLATE 4. SEM images of representative seeds found in the Variabilis subclade (and M. incerta). A–H. Seeds in lateral symmetrical plane. a–h. Detail of testa cells and cell wall microrelief. A, a. M. albertobrenesii (Chacón & Herrera 1680, CAS). B, b. M. boekei (Clark et al. 1960, US). C, c. M. bractiflora (Devia & Prado 2702, CAS). D, d. M. formicaria (Almeda et al. 10274, CAS). E, e. M. incerta (Acosta Solís 12274, F). F, f. M. latidecurrens (McPherson 20808, MO). G, g. M. magnifolia (Rueda et al. 8682, CAS). H, h. M. variabilis (Wallnöfer 12-25388, CAS). Scale bars: A–C, F, H=200µm, E, D, G=100µm; a–c, e, g, h=20µm, d, f=15µm. SEM images taken by Diana Gamba.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.