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82 results for “Microplitis”
Supplementary Files for "Geodetic constraints on cratonic microplates and broad strain during rifting of thick Southern African lithosphere"
<p>This repository contains the supplementary files and tables for the manuscript:</p> <p><strong>Geodetic constraints on cratonic microplates and broad strain during rifting of thick Southern African lithosphere</strong></p> <p><strong>L. N. J. Wedmore<sup>1</sup>, Biggs, J.<sup>1</sup>, Floyd, M.<sup>2</sup>, Fagereng, Å.<sup>3</sup>, Mdala, H.<sup>4</sup>, Chindandali, P.<sup>5</sup>, Williams, J.<sup>3</sup>, Mphepo, F.<sup>4</sup></strong></p> <p><sup>1</sup>School of Earth Sciences, University of Bristol, Bristol, UK</p> <p><sup>2</sup>Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA</p> <p><sup>3</sup>School of Earth and Environmental Sciences, Cardiff University, Cardiff, UK</p> <p><sup>4</sup>Geological Survey Department, Mzuzu Regional Office, Mzuzu, Malawi</p> <p><sup>5</sup>Geological Survey Department, Zomba, Malawi</p> <p>This manuscriptis published in Geophysical Research Letters: <a href="https://doi.org/10.1029/2021GL093785">https://doi.org/10.1029/2021GL093785</a></p> <p>Please contact the author (luke.wedmore@bristol.ac.uk) for more information.</p> <p> </p> <p>File Information</p> <p>File S1 – Table of GNSS station velocities for the combined southern Malawi/GeoPRISMS/Saria et al. (2014) solution in the ITRF14 reference frame.</p> <p>File S2 – Table of GNSS station and the references for the data used in this paper.</p> <p>File S3 – Details of the sites used for the two-plate test and the results of this inversion.</p> <p>File S4 – Details of the sites used for the three-plate test and the results of this inversion.</p> <p>File S5 – A sig_neu command file with details of the random noise added to outlier sites within GLOBK.</p>
Supplementary data: Geometry-preserving Expansion Microscopy microplates enable high fidelity nanoscale distortion mapping
<p>--- Data supplement---</p> <p>--- Title: Geometry-preserving Expansion Microscopy microplates enable high fidelity nanoscale distortion mapping</p> <p>The zip file contains the following directories and subdirectories. The files, recommended software, calling code and relevance to the main manuscript (preprint found at https://doi.org/10.1101/2023.02.20.529230) are included in the notes below:</p> <p>(i) “STL files” – Includes .stl file formats of the Expansion Microscopy microplate components. These files can be opened with any CAD software (e.g. Fusion 360) or any opensource 3D printer slicer programme (e.g. Chitubox v1.9.5)</p> <p>(ii) “Image alignment & distortion analysis code” – Directory containing the ImageJ macros and custom-written Python scripts for the analysis pipeline described in the main manuscript, from image scaling and alignment to for distortion plotting and RMS Error analysis and plotting. Subdirectories include:</p> <ul> <li>a.“Distortion analysis and RMSE plotting code” – Directory contains custom-written Python scripts for updated distortion analysis, plotting, RMS error calculation, and code for combining the plots. Each .py file can be run with any Python distribution. Dependency libraries and modules (all opensource) include numpy, os, cv2, skimage, and tifffile</li> <li>b.“Basic Align Macro.ijm” – ImageJ macro for basic image alignment of pre- and post-Expansion Microscopy images. Refer to <a href="https://imagej.nih.gov/ij/developer/macro/macros.html#tools">https://imagej.nih.gov/ij/developer/macro/macros.html#tools</a> on how to install and run ImageJ macros.</li> </ul> <p> </p> <p>(iii)“Example data and analysis scripts” – Directory containing example datasets and worked examples of analysis. Subdirectories include:</p> <ul> <li>a.“Single-channel_HeLa_cells”. Worked example of single-colour dataset of a cluster of HeLa cells stained with NHS-AZ488. Folder includes pre-Expansion and post-Expansion images (.tif format), overlays of the pre- and post-Expansion images along with distortion vector maps, and plots of normalised RMS error (in % values) against measurement length scale (in micrometers) saved as numpy arrays (.npy format). This can be called in using a Python code similar to: numpy.load("file name")</li> <li>b.“Multiplexed_Drosophila_wing”. Worked example of two-colour dataset of Drosophila fly wing tissue images stained with NHS-Alexa647 and anti-E-cad-GFP/Alexa488. Folder includes pre-Expansion and post-Expansion images (.tif format), overlays of the pre- and post-Expansion images along with distortion vector maps, and plots of normalised RMS error (in % values) against measurement length scale (in micrometers) saved as numpy arrays (.npy format).</li> <li>c.“Multiplexed_HeLa_cells”. Worked example of two-colour dataset of cultured HeLa cell images stained with NHS-AZ488 and antibodies. Each folder includes pre-Expansion and post-Expansion images (.tif format), overlays of the pre- and post-Expansion images along with distortion vector maps, and plots of normalised RMS error (in % values) against measurement length scale (in micrometers) saved as numpy arrays (.npy format): <ul> <li>I.“KDELAlexa594_NHSAZ488” – antibody staining against KDEL</li> <li>II.“NUP98Alexa594_NHSAZ488” – antibody staining against Nups98</li> </ul> </li> </ul> <p> </p> <ul> <li>d.“Distortion Correction”. Folder contains two subfolders of output images from distortion corrections using the Linear Stack Alignment with SIFT plugin in ImageJ v1.54f. Each example consists of a pre- and post-Expansion image file, and the ‘corrected’ image file generated with 5, 10, and 50 voxel B-spline sampling.</li> </ul> <p> </p> <p>These files are placed in public domain under Creative Commons license CC BY-ND 4.0</p>
Inner filter effect correction for fluorescence measurements in microplates (ZINFE and NINFE) - experimental data
<p>Experimental data for the paper entitled <em>Inner Filter Effect Correction for Fluorescence Measurements in Microplates Using Variable Vertical Axis Focus</em> (https://doi.org/10.1021/acs.analchem.2c01031).</p> <p>Separate datasets are provided for data with background correction, without background correction, and absorbance-corrected data.</p> <p>All results were obtained using the online calculator service written in Javascript: https://ninfe.science (version 15.9.2021.).</p> <p>For additional details please visit: https://glymech.pharma.hr//GlyMech.html.</p> <p> </p>
Fig 1 in Development of Microplitis similis (Hymenoptera: Braconidae) on two candidate host species, Spodoptera litura and Spodoptera exigua (Lepidoptera: Noctuidae)
Fig 1. Age–stage specific survival rates (Sx) of Micropletis similis that developed in Spodoptera exigua (A) and in S. litura (B).
Fig 2 in Development of Microplitis similis (Hymenoptera: Braconidae) on two candidate host species, Spodoptera litura and Spodoptera exigua (Lepidoptera: Noctuidae)
Fig 2. Daily body weight of parasitized and non-parasitized Spodoptera exigua (A) and S. litura (B). Each datum is shown as a mean ± SE.
Inner filter effect correction for fluorescence measurements in microplates (AddAbs) - experimental data
<p>Experimental data for the paper entitled <em>Reducing the Inner Filter Effect in Microplates by Increasing Absorbance? Linear Fluorescence in Highly Concentrated Fluorophore Solutions in the Presence of an Added Absorber</em> (<a href="https://doi.org/10.1021/acs.analchem.3c01295">https://doi.org/10.1021/acs.analchem.3c01295</a>).</p> <p>Separate worksheets are provided for the following:</p> <p>1. Fluorescence measurements - raw values in triplicate; 2 worksheets for transparent (T) and nontransparent (NT) microplates, each with 15 titrations: L<sub>1</sub>-L<sub>12</sub> and H<sub>1</sub>-H<sub>3</sub>,</p> <p>2. Absorbance measurements - raw values in triplicate (<em>λ</em><sub>ex</sub> = 345 nm, <em>λ</em><sub>em</sub> = 390 nm); 1 worksheet for T microplates only, with 4 titrations: L<sub>1</sub>-L<sub>4</sub>,</p> <p>3. Fluorescence measurements - averaged, baseline-corrected averaged and normalized baseline-corrected averaged triplicates; 2 worksheets for T and NT microplates, each with 15 titrations: L<sub>1</sub>-L<sub>12</sub> and H<sub>1</sub>-H<sub>3</sub>,</p> <p>4. ZINFE/NINFE-corrected fluorescence in T microplates; 12 worksheets for 12 titrations: L<sub>1</sub>-L<sub>9</sub> and H<sub>1</sub>-H<sub>3</sub>,</p> <p>5. ZINFE/NINFE-corrected fluorescence in NT microplates; 12 worksheets for 12 titrations: L<sub>1</sub>-L<sub>9</sub> and H<sub>1</sub>-H<sub>3</sub>.</p> <p>The results of the ZINFE and NINFE correction methods obtained using the online calculator service written in Javascript: https://ninfe.science (version 09.5.2022.)</p> <p>For additional details please visit: https://glymech.pharma.hr//GlyMech.html.</p>
Chromophore-driven optical path reduction as an indirect inner filter effect correction strategy in fluorescence microplate assays - experimental data
<p>Experimental data for the paper entitled <em>Chromophore-driven optical path reduction as an indirect inner filter effect mitigation strategy in fluorescence microplate assays</em> (<a title="Persistent link using digital object identifier" href="https://doi.org/10.1016/j.saa.2025.127049" target="_blank" rel="noreferrer noopener"><span><span>https://doi.org/10.1016/j.saa.2025.127049</span></span></a>). </p> <p>An Excel file with multiple worksheets is provided for the following:</p> <p>1. Fluorescence data:</p> <p>The worksheets contain fluorescence values measured in tetraplicates using two microplate readers (Tecan Spark M10, Tecan, Austria and SpectraMax iD3, Molecular Devices, USA), with baseline values recorded in octuplicates. The results were averaged and baseline-corrected. Detailed notes on the titration experiments are included in the manuscript. Data include both IFE-uncorrected fluorescence and fluorescence corrected (fully or partially) by the addition of an absorbing chromophore.</p> <p>2. Absorbance data:</p> <p>All measured absorbance values obtained using the Tecan Spark M10 microplate reader with UV-Vis transparent microplates are included. The absorbance values at specific wavelengths suitable for the Lakowicz IFE correction method or for determining the concentration of the compound are given separately.</p> <p>3. Fluorescein spectra:</p> <p>UV-Vis and fluorescence excitation/emission spectra for highly dilute fluorescein concentrations where the inner filter effect (IFE) is negligible are reported. These measurements were performed to obtain “true” excitation and emission spectra without the influence of IFE quenching effects.</p> <p>4. ZINFE/NINFE IFE corrections:</p> <p>The dataset contains the results of ZINFE/NINFE IFE corrections (<a href="https://doi.org/10.1021/acs.analchem.2c01031">https://doi.org/10.1021/acs.analchem.2c01031</a>) applied to the fluorescence data and processed using the web service available at <a href="https://ninfe.science">https://ninfe.science</a>.</p> <p>The notation of the fluorophores and microplates is the same as in the manuscript. For reasons of visual clarity, the numerical titration indices are not in subscript.</p> <p> </p>
FIGURE 16. Microplitis subsulcatus Granger. a in Microgastrinae (Hymenoptera: Braconidae) of Reunion Island: a catalogue of the local species, including 18 new taxa and a key to species
FIGURE 16. Microplitis subsulcatus Granger. a: female, habitus; b: fore wing; c: mesosoma; d: metasoma.
FIGURE 1. A in Review of palaeozygopleurid gastropods (Palaeozygopleuridae, Gastropoda) from Devonian strata of the Perunica microplate (Bohemia), with a re-evaluation of their stratigraphic distribution, notes on their ontogeny, and descriptions of new taxa
FIGURE 1. A. Generalized geological map of the Barrandian showing position of all known localities of palaeozygopleurid gastropods. Modified from Manda (2007). B. Generalized maps showing paleogeographic position of Perunica microplate during the Early Devonian. Modified from Torsvik (2009).
FIGURE 2 in Review of palaeozygopleurid gastropods (Palaeozygopleuridae, Gastropoda) from Devonian strata of the Perunica microplate (Bohemia), with a re-evaluation of their stratigraphic distribution, notes on their ontogeny, and descriptions of new taxa
FIGURE 2. Cimrmaniela sveraki sp. et gen. nov. (A–F) and Cimrmaniela smoljaki sp. et gen. nov. (G–M) from middle Early Devonian (Pragian) age strata of the Konĕprusy Limestone (Praha Formation) in Barrandian, Czech Republic. A–D. Holotype (UUG JF 914), E–F. Paratype A (UUG JF 915). G–I and M. Holotype (UUG JF 907), J–L. Paratype (UUG JF 908). Shell height: A–D—3.2 mm, E, F—2.1 mm, H, I—4.2 mm, J–L—2.1 mm, figure height of shell detail: G—1.9 mm, M—1.8 mm.
FIGURE 4 in Review of palaeozygopleurid gastropods (Palaeozygopleuridae, Gastropoda) from Devonian strata of the Perunica microplate (Bohemia), with a re-evaluation of their stratigraphic distribution, notes on their ontogeny, and descriptions of new taxa
FIGURE 4. Stratigraphic distribution of all hitherto described palaeozygopleurid gastropods from Barrandian, Perunica microplate. Two species of Palaeozygopleura as well as one species of Devonozyga marked by * probably represent synonyms of Palaeozygopleura bohemica and Devonozyga perneri.
FIGURE 3 in Review of palaeozygopleurid gastropods (Palaeozygopleuridae, Gastropoda) from Devonian strata of the Perunica microplate (Bohemia), with a re-evaluation of their stratigraphic distribution, notes on their ontogeny, and descriptions of new taxa
FIGURE 3. Palaeozygopleura lukesi sp. nov. from middle Early Devonian (Pragian) age strata of the Konĕprusy Limestone (Praha Formation) in Barrandian, Czech Republic. A–C, H, and I. Holotype (UUG JF 922), D. Paratype A (UUG JF 923), E, F. Paratype B (UUG JF 924), G. Paratype C (UUG JF 925), J,M. Paratype D (UUG JF 926), K. Paratype E (UUG JF 927), L, N. Paratype F (UUG JF 928). All samples are from the type locality. A— shell width 1.5 mm, shell height: B, C—4.6 mm, D—3.9 mm, E, F—3.8 mm, K—3.6 mm, L—5 mm, figure height of shell detail: G—1.1 mm, H—1.5 mm, I—1.6 mm, J—5.6 mm, M—2.8 mm, N—2.1 mm.
FIGURE 17. Microplitis similis Lyle, A in Taxonomic studies on Oriental Microplitis Foerster (Hymenoptera: Braconidae, Microgastrinae) with description of two new species from South India
FIGURE 17. Microplitis similis Lyle, A) Habitus, dorsal view, male, cotype; B) Metasoma, dorsal view, specimen from Indonesia; C) Head & mesosoma (in part), dorsal view, specimen from Indonesia; D) Propodeum & tergite 1, dorsal view, specimen from Indonesia; E) Mesosoma (in part), medio & latero tergite 1, specimen from Indonesia; F) Fore wing, specimen from Indonesia.
FIGURE 3 in Taxonomic studies on Oriental Microplitis Foerster (Hymenoptera: Braconidae, Microgastrinae) with description of two new species from South India
FIGURE 3. Microplitis narendrani Ranjith & Nasser sp. nov., female, holotype A) Habitus, lateral view; B) Head, anterior view; C) Mesosoma, dorsal view; D) Propodeum, dorsal view; E) Metasoma, dorsal view; F) Fore wing.
FIGURE 9 in Taxonomic studies on Oriental Microplitis Foerster (Hymenoptera: Braconidae, Microgastrinae) with description of two new species from South India
FIGURE 9. Microplitis chui Xu & He, female, holotype A) Habitus, dorsal view; B) Head, anterior view; C) Mesosoma, dorsal view; D) Propodeum & tergite 1, dorsal view; E) Metasoma, dorsal view; F) Fore wing.
FIGURE 5 in Taxonomic studies on Oriental Microplitis Foerster (Hymenoptera: Braconidae, Microgastrinae) with description of two new species from South India
FIGURE 5. Microplitis ajmerensis Rao & Kurian, female, holotype A) Habitus, lateral view with cocoon; B) Mesosoma & metasoma, lateral view; C) Habitus, dorsal view; D) Fore wing.
FIGURE 22 in Taxonomic studies on Oriental Microplitis Foerster (Hymenoptera: Braconidae, Microgastrinae) with description of two new species from South India
FIGURE 22. Microplitis zhaoi Xu & He, female, holotype A) Habitus, lateral view; B) Head, anterior view; C) Mesosoma, dorsal view; D) Propodeum (in part) & tergite 1, dorsal view; E) Metasoma, dorsal view; F) Fore wings.
FIGURE 6 in Taxonomic studies on Oriental Microplitis Foerster (Hymenoptera: Braconidae, Microgastrinae) with description of two new species from South India
FIGURE 6. Microplitis areyongensis Austin & Dangerfield, female, holotype A) Habitus, lateral view; B) Head, anterior view; C) Head & mesosoma, lateral view; D) Head & mesosoma, dorsal view; E) Metasoma, lateral view; F) Fore wing.
FIGURE 2. A in Taxonomic studies on Oriental Microplitis Foerster (Hymenoptera: Braconidae, Microgastrinae) with description of two new species from South India
FIGURE 2. A) Parasitoid cocoon of Microplitis narendrani Ranjith & Nasser sp. nov. B) Parasitoid cocoon of M. pennatulae Ranjith & Rajesh sp. nov. C) Final instar larva of M. pennatulae sp. nov. D) Final instar larva of Psalis pennatula Fabricius.
FIGURE 13 in Taxonomic studies on Oriental Microplitis Foerster (Hymenoptera: Braconidae, Microgastrinae) with description of two new species from South India
FIGURE 13. Microplitis maculipennis (Szépligeti), female A) Habitus, lateral view with cocoon; B) Head, anterior view; C) Head & mesosoma (in part), dorsal view; D) Head (in part) & mesosoma, dorsal view; E) Propodeum & tergite 1, dorsal view; F) Metasoma, dorsal view.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.