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ShareScore release 0.9.0
Dataset results
21 results for “PTM”
PROSPECT PTMs: Test-PTM
<div> <p>High-quality labeled datasets for applying machine and deep learning to several tasks in MS based proteomics.</p> </div>
PROSPECT PTMs: Multi-PTM
<div> <p>High-quality labeled datasets for applying machine and deep learning to several tasks in MS based proteomics.</p> <p> </p> </div>
PROSPECT PTMs: TMT-PTM
<div> <p>High-quality labeled datasets for applying machine and deep learning to several tasks in MS based proteomics.</p> </div>
The burden of post-translational modification (PTM) – disrupting mutations in the tumor matrisome
<p>A Pan-cancer analysis of the post-translational modification (PTM) – disrupting mutations in the tumor matrisome</p>
Processed results supporting MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics
<p>Search results supporting the manuscript "MSFragger-Labile: A Flexible Method to Improve Labile PTM Analysis in Proteomics". Processed PSM, ion, peptide, and protein tables for each search are provided, sorted by figure within the zip file. FragPipe workflows with parameters are also provided for all searches. </p>
Samples for CNIC-Proteomics Nextflow pipelines: nf-PTM-compass
<p>We present several input sample files for the execution of various Nextflow pipelines developed by the <em>Cardiovascular Proteomics Lab/Proteomics Unit at the National Centre for Cardiovascular Research</em> (CNIC, <a href="https://www.cnic.es/" target="_blank" rel="noopener">https://www.cnic.es</a>).</p> <p>The <strong>nf-PTM-compass</strong> enhances the identification and quantification of Post-Translational Modifications (PTMs) (<a href="https://github.com/CNIC-Proteomics/nf-PTM-compass" target="_blank" rel="noopener">https://github.com/CNIC-Proteomics/nf-PTM-compass</a>).</p> <p>The available sample files are as follows:</p> <ul> <li><strong>heteroplasmic_heart.zip</strong>: Heart tissue. Input files for nf-PTM-compass, derived from the study by Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. (*), with results from an open search conducted using nf-SearchEngine results.</li> <li><strong>heteroplasmic_liver.zip</strong>: Liver tissue. Input files for nf-PTM-compass, derived from the same study (*), with results from an open search conducted using nf-SearchEngine results.</li> <li><strong>heteroplasmic_muscle.zip</strong>: Mucle tissue. Input files for nf-PTM-compass, derived from the same study (*), with results from an open search conducted using nf-SearchEngine results.</li> </ul> <p> </p> <p>(*) Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. Comprehensive Quantification of the Modified Proteome Reveals Oxidative Heart Damage in Mitochondrial Heteroplasmy. <em>Cell Reports</em>. 2018;23(12):3685-3697.e4. doi:10.1016/j.celrep.2018.05.080</p> <p> </p>
001 - PTM - Olejový kahan
Source: Objaverse 1.0 / Sketchfab
Proactive Telemedicine to Improve Healthcare Access and Prevention in Rural Primary Care (PTM)
ClinicalTrials.gov study NCT07299201. IPD Sharing: NO. Countries: 1. Publications: 17.
PTM-Shepherd_Diagnostic_Ion_Mining_Reviewer_Materials
<p>Reviewer materials for manuscript submission.</p>
Supplementary material 4 from: Yoo H, Huyen PTM, Chae J, Karanovic I (2023) Three Loxocaudinae species (Ostracoda, Podocopida) from South Korea. ZooKeys 1138: 183-209. https://doi.org/10.3897/zookeys.1138.96201
Pairwise p-distances among 18S sequences of three new Loxocaudinae species
Supplementary material 1 from: Yoo H, Huyen PTM, Chae J, Karanovic I (2023) Three Loxocaudinae species (Ostracoda, Podocopida) from South Korea. ZooKeys 1138: 183-209. https://doi.org/10.3897/zookeys.1138.96201
List of primers and PCR conditions
Supplementary material 2 from: Yoo H, Huyen PTM, Chae J, Karanovic I (2023) Three Loxocaudinae species (Ostracoda, Podocopida) from South Korea. ZooKeys 1138: 183-209. https://doi.org/10.3897/zookeys.1138.96201
List of 18S and COI sequences used for phylogenetic analysis
Supplementary material 3 from: Yoo H, Huyen PTM, Chae J, Karanovic I (2023) Three Loxocaudinae species (Ostracoda, Podocopida) from South Korea. ZooKeys 1138: 183-209. https://doi.org/10.3897/zookeys.1138.96201
Pairwise p-distances among COI sequences of three new Loxocaudinae species
MIND-S 13 common PTM dataset
<p>PTM benchmark dataset for 13 types of common PTMs used to train MIND-S</p>
PTM-101 in Pancreatic Ductal Adenocarcinoma (PDAC)
ClinicalTrials.gov study NCT06673017. IPD Sharing: NO. Countries: 1. Publications: 0.
Trial to Determine the Immunomodulatory Activity of PTM-001 in Patients With Hidradenitis Suppurativa
ClinicalTrials.gov study NCT05020730. IPD Sharing: NO. Countries: 1. Publications: 0.
RNA-seq analysis of genes differentially expressed in NCI-H1299 cells with platensimycin (PTM) derivative 6p treatment
GEO Series GSE198816. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Samples for PTM-compass
<p>We present several input sample files for the execution of PTM-compass developed by the <em>Cardiovascular Proteomics Lab/Proteomics Unit at the National Centre for Cardiovascular Research</em> (CNIC, <a href="https://www.cnic.es/" target="_blank" rel="noopener">https://www.cnic.es</a>).</p> <p>The available sample files are as follows:</p> <ul> <li><strong>heteroplasmic_heart.zip</strong>: Heart tissue. Input files for PTM-compass, derived from the study by Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. (*), with results from an open search conducted using nf-SearchEngine results.</li> <li><strong>heteroplasmic_liver.zip</strong>: Liver tissue. Input files for PTM-compass, derived from the same study (*), with results from an open search conducted using nf-SearchEngine results.</li> <li><strong>heteroplasmic_muscle.zip</strong>: Mucle tissue. Input files for PTM-compass, derived from the same study (*), with results from an open search conducted using nf-SearchEngine results.</li> </ul> <p>(*) Bagwan N, Bonzon-Kulichenko E, Calvo E, et al. Comprehensive Quantification of the Modified Proteome Reveals Oxidative Heart Damage in Mitochondrial Heteroplasmy. <em>Cell Reports</em>. 2018;23(12):3685-3697.e4. doi:10.1016/j.celrep.2018.05.080</p>
PROSPECT PTMs: Multi-PTM (old)
<p>You can find the updated version here: <a href="https://zenodo.org/records/11472525">https://zenodo.org/records/11472525</a></p>
PROSPECT PTMs: Test-PTM (old)
<p>You can find updated files here: <a href="https://zenodo.org/records/11477731">https://zenodo.org/records/11477731</a></p>
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