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12 results for “Selaginella moellendorffii”
Fig. 2 in Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP74L2) and hydroperoxide lyase (CYP74L1)
Fig. 2. The structural formulae of products of recombinant enzyme incubations with different substrates. 1, 12-oxo-13-hydroxy-9,15-octadecadienoic acid; 2, 12-oxo-13-hydroxy-9-octadecenoic acid; 3, 9- hydroxy-10-oxo-12,15-octadecadienoic acid; 4, 9-hydroxy-10-oxo-12-octadecenoic acid; 5, 11-hydroxy- 12,13-epoxy-9-octadecenoic acid; 5a, 11-hydroxy- 12,13-epoxy-9,15-octadecadienoic acid; 6, 9,10- epoxy-11-hydroxy-12-octadecenoic acid; 6a, 9,10- epoxy-11-hydroxy-12,15-octadecadienoic acid; 7, 9- hydroxynonanoic acid; 8, (9Z)-12-hydroxy-9-dodecenoic acid; 9, (10E)-12-hydroxy-10-dodecenoic acid; R, -(CH2)7COOH.
Fig. 1 in Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP74L2) and hydroperoxide lyase (CYP74L1)
Fig. 1. The multiple alignment of the CYP74L1, CYP74L2, and CYP74L3 sequences of S. moellendorffii. Conservative structures are marked as follows: the I-helix groove region (SRS-4) is numbered 1–6, two positions after the I-helix groove region are marked by ▾ symbol, the F/L toggle, the ERR-triad, the PPV domain, and the cysteinyl ligand are marked by ◆, ●, □, and ◊ symbols, respectively.
Fig. 4 in Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP74L2) and hydroperoxide lyase (CYP74L1)
Fig. 4. The TIC GC–MS chromatograms of products (Me/TMS) of incubations of the recombinant CYP74L2 with 13-HPOT (A), 13-HPOD (B), 9-HPOT (C), and 9-HPOD (D). Conditions of incubation, extraction, derivatisation and analysis are described in Materials and Methods. 1a, 1b (threo and erythro isomers of 12,13-dihydroxy-9,15-octadecadienoic acid (the products of the α-ketol 1 reduction with NaBH4)); 2a, 2b (threo and erythro isomers of 12,13- dihydroxy-9-octadecenoic acid (the products of the α-ketol 2 reduction with NaBH4)); 3a, 3b (threo and erythro isomers of 9,10-dihydroxy-12,15-octadecadienoic acid (the products of the α-ketol 3 reduction with NaBH4)); 4a, 4b (threo and erythro isomers of 9,10- dihydroxy-12-octadecenoic acid (the products of the α-ketol 4 reduction with NaBH4)); 7, 9-hydroxynonanoic acid; 5, 11-hydroxy-12,13-epoxy-9-octadecenoic acid; 5a, 11-hydroxy-12,13-epoxy-9,15-octadecadienoic acid; 6, 9,10-epoxy-11-hydroxy-12-octadecenoic acid; 6a, 9,10-epoxy-11-hydroxy-12,15-octadecadienoic acid; 7, 9-hydroxynonanoic acid; 8, (9Z)-12-hydroxy-9-dodecenoic acid; 9, (10E)-12-hydroxy-10- dodecenoic acid. The structural formulae of products are present at Fig. 2. 9-HOT, (9S,10E,12Z,15Z)-9-hydroxy-10,12,15-octadecatrienoic acid.
Fig. 6 in Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP74L2) and hydroperoxide lyase (CYP74L1)
Fig. 6. The multiple alignment of the CYP74L1, CYP74L2, and CYP74L3 sequences of S. moellendorffii with other CYP74s described earlier. Conservative structures are marked as follows: the I-helix groove region (SRS-4) is numbered 1–6, two positions after the I-helix groove region are marked by ◆ symbol, the F/L toggle is marked by ▾ symbol.
Fig. 7 in Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP74L2) and hydroperoxide lyase (CYP74L1)
Fig. 7. The scheme of catalytic mechanisms of the CYP74L enzymes.
Expression atlas of Selaginella moellendorffii provides insights into the evolution of vasculature, secondary metabolism and roots
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Small RNAs from the lycopod Selaginella moellendorffii
GEO Series GSE7320. Selaginella moellendorffii. 1 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Comparative RNA-seq data on Selaginella moellendorffii organs
GEO Series GSE123120. Selaginella moellendorffii. 8 samples. Type: Expression profiling by high throughput sequencing.
Fig. 8 in Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP74L2) and hydroperoxide lyase (CYP74L1)
Fig. 8. The unrooted phylogenetic tree of the CYP74 clan. Classified CYP74 subfamilies are marked with their letter designation (A, B, C etc.). Subfamilies consisting of more than one member are outlined with unclosed curves (semi-ellipses). Plant CYP74s: As, Allium sativum; AsDES, CYP74H1, GI:83414021; At, Arabidopsis thaliana; AtAOS, CYP74A1, GI:15239032; AtHPL, CYP74B2, GI:3822403; Ca, Capsicum annuum; CaHPL, CYP74B1, GI:1272340; Cm, Cucumis melo; CmHPL/EAS, CYP74C2, GI:14134199; Cs, C. sativus; CsHPL/EAS, CYP74C1, GI:101211324; CsHPL/EAS/AOS, CYP74C31 GI:101211574; Dc, Daucus carota; DcAOS, CYP74B33, GI:10821971; Gm, Glycine max; GmHPL/EAS (CYP74C13_Gm), KRH29541.1; Hv, Hordeum vulgare; HvAOS2, CYP74A3, GI:7452981; HvHPL, CYP74F3, GI: 22265998; Kf, K. flaccidum (green alga); KfAOS, SI:LC032459; Le, Solanum lycopersicum; LeAOS1, CYP74A1, GI:7581989; LeAOS2, CYP74A2, GI:7677376; LeAOS3, CYP74C3, GI:25991603; LeHPL, CYP74B3, GI:7677378; LeDES (CYP74D1), NP001234527.1; Lu, Linum usitatissimum; LuAOS, CYP74A1, GI:1352186; LuDES, CYP74B16, GI:379048766; Mp, M. polymorpha; MpAOS1, SI:LC032457.1, MpAOS2, SI:LC032458.1; Mt, Medicago truncatula; MtHPL3, CYP74B5, GI:63081244; MtHPL1/EAS, CYP74C13, GI:33504430; Nt, Nicotiana tabacum; NtDES, CYP74D3; GI: 107799697; Os, Oryza sativa; OsAOS, CYP74A4, GI:115455571; OsHPL1, CYP74E2, GI:115445057; OsHPL2, CYP74E1, GI:125538638; Pa, Parthenium argentatum; PaAOS, CYP74A1, GI:218511958; Pd, Prunus dulcis; PdHPL, CYP74C5, GI:33300600; Pg, Psidium guajava; PgHPL, CYP74B5, GI:13183137; Pi, Petunia inflata; PiCYP74C9, GI:85720841; Pp, P. patens; PpAOS1, CYP74A1, GI:22217985; PpAOS2, CYP74A8, GI:168014176; PpHPL, CYP74G1, GI:76057841; Ra, Ranunculus acris; RaDES, CYP74Q1, GI:768564485; Rj, Ranunculus japonicus; RjEAS, CYP74A88, SI:MK061531; Sm, S. moellendorffii; SmDES1, CYP74M1, GI:9660714; SmEAS, CYP74M2, GI:9637471 SmDES2, CYP74M3, GI:9654395; SmAOS2, CYP74K3, EFJ20163.1; CYP74L1, XP002969700.1; CYP74L2, XP002972651.1; CYP74L3, EFJ25870.1; St, Solanum tuberosum; StAOS2, CYP74A6, GI:86769479; StAOS3, CYP74C10, GI:56605358; StHPL/EAS, CYP74C4, GI:102588560; StDES, CYP74D2, GI:12667099; Zm, Zea mays; ZmAOS, CYP74A19, GI:223947589; ZmHPL, CYP74F2, GI:162462890. CYP74 clan members: Es, E. siliculosus (brown alga); EsEAS, CYP5164B1, GI:1109557544; Mn, M. nodulans (proteobacteria); MnHPL, SI:WP_015932840.1; Msp, Methylobacterium sp. 4–46; MspCYP74, SI:WP_012335549.1. Ap, A. palmata (Metazoa); ApAOS, GI:187948710; Bf, B. floridae (Metazoa); BfEAS, CYP440A1, GI:189312561; Nv, N. vectensis (Metazoa); NvEAS, CYP443D1, GI:5516222; NvHPL/EAS CYP443C1 (GenBank QJI54761.1).
Fig. 5 in Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP74L2) and hydroperoxide lyase (CYP74L1)
Fig. 5. The TIC chromatogram of oxylipins (Me/TMS) from the aerial parts of S. moellendorffii plants. DE1, (ω5Z)-etheroleic acid; DE2, etheroleic acid; DE3, (11Z)- etheroleic acid; DE4, etherolenic acid; DE5, (ω5Z)-etherolenic acid; DE6, (11Z)-etherolenic acid; 5, 11-hydroxy-12,13-epoxy-9-octadecenoic acid; 5a, 11-hydroxy- 12,13-epoxy-9,15-octadecadienoic acid; 10, eicosanoic acid; 11, 13-ketooctadecadienoic acid; 12, epimeric 9-hydroxy-12,13-epoxy-10-octadecenoic acid; 12a, epimeric 9-hydroxy-12,13-epoxy-10,15-octadecadienoic acid. Additionally, 13-HOD, as well as cis and trans isomers of 12-OPDA were detected.
Fig. 3 in Oxylipin biosynthesis in spikemoss Selaginella moellendorffii: Identification of allene oxide synthase (CYP74L2) and hydroperoxide lyase (CYP74L1)
Fig. 3. The total ion current (TIC) GC–MS chromatograms of products (Me/TMS) of incubations of the recombinant CYP74L2 with 13-HPOT (A), 13- HPOD (B), 9-HPOT (C), and 9-HPOD (D). Conditions of incubation, extraction, derivatisation and analysis are described in Materials and Methods. 1a, 1b (threo and erythro isomers of 12,13-dihydroxy- 9,15-octadecadienoic acid (the products of the α-ketol 1 reduction with NaBH4)); 2a, 2b (threo and erythro isomers of 12,13-dihydroxy-9-octadecenoic acid (the products of the α-ketol 2 reduction with NaBH4)); 3a, 3b (threo and erythro isomers of 9,10- dihydroxy-12,15-octadecadienoic acid (the products of the α-ketol 3 reduction with NaBH4)); 4a, 4b (threo and erythro isomers of 9,10-dihydroxy-12-octadecenoic acid (the products of the α-ketol 4 reduction with NaBH4)); 7, 9-hydroxynonanoic acid. The structural formulae of products are present at Fig. 2. 13-HOT, (9Z,11E,13S,15Z)-13-hydroxy-9,11,15-octadecatrienoic acid; 13-HOD, (9Z,11E,13S)-13-hydroxy- 9,11-octadecadienoic acid; 9-HOD, (9S,10E,12Z)-9- hydroxy-10,12-octadecadienoic acid.
RNA-Sequencing analysis of reproduction/meiosis in Selaginella moellendorffii
GEO Series GSE83783. Selaginella moellendorffii. 7 samples. Type: Expression profiling by high throughput sequencing.
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