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1,750 results for “Shoulder”
3D Reconstruction of Shoulder Muscles in Hominoid Primates: Correlating Scapular Attachment Areas with Muscle Volume
<h2><strong>How To Cite:</strong></h2> <p>If you use this data or code in your research, please cite the associated open-access <strong>manuscript, </strong>which you can find here: <a href="https://doi.org/10.1111/joa.14199">https://doi.org/10.1111/joa.14199</a><br>and this <strong>zenodo repository</strong>.</p> <h2><strong>Online Visualization:</strong></h2> <p>You can access an interactive, web-based view of the notebooks and analyses <a title="Shoulder Muscle Reconstruction Code" href="https://juliavanbeesel.github.io/ShoulderMuscleReconstructions/intro.html" target="_blank" rel="noopener">here</a>.</p> <h2><strong>Repository Description:</strong></h2> <p>This repository contains two zip files related to the analysis and visualization of 3D reconstructed muscle volumes and lengths from various hominoid specimens.</p> <ol> <li> <p><strong>MeshFiles.zip:</strong></p> <ul> <li><strong>Contents:</strong> This zip file includes all <code>.obj</code> files for 3D reconstructed muscle volumes and associated anatomical structures. Specifically, it contains: <ul> <li><strong>Muscles:</strong> Supraspinatus, Infraspinatus, Subscapularis, Teres Major, Teres Minor</li> <li><strong>Bones:</strong> Scapula and Humerus</li> <li><strong>Attachment Sites</strong></li> </ul> </li> <li><strong>Organization:</strong> The files are organized into folders by specimen. There are 9 hominoid specimens from the following species: <ul> <li><em>Hylobates lar</em></li> <li><em>Symphalangus syndactylus</em></li> <li><em>Pongo pygmaeus</em></li> <li><em>Pongo abelii</em></li> <li><em>Gorilla gorilla</em></li> <li><em>Pan troglodytes</em></li> <li><em>Homo sapiens</em></li> </ul> </li> <li><strong>Surface Scans of Muscle Geometry: </strong>The specimens <em>Pongo</em> (ID 3) and <em>Symphalangus </em>(ID 122) also contain surface scans that depict the muscle geometry of the listed muscles. These surface scans can be used for training with the iterative polygonal modelling approach. The scans are stored as <code>.obj</code>, <code>.mtl</code> and <code>.png</code> files. To view textures on these meshes, keep all three files together in the same folder.</li> <li><strong>Additional Details:</strong> Muscle reconstructions were performed for different arm positions. Each folder contains multiple humerus files, with each file representing a humerus in a specific position aligned with the corresponding muscles. The humerus file names indicate the muscles the humerus is aligned with.<br><br></li> </ul> </li> <li> <p><strong>DataAndCode.zip:</strong></p> <ul> <li><strong>Contents:</strong> <ul> <li><strong>Excel File:</strong> The original data used for analysis, presented in Table 2 of the manuscript.</li> <li><strong>Jupyter Notebook Files: </strong>These notebooks provide the analyses and figures as described in the manuscript: <ul> <li><em>Accuracy_Muscle_Length_Reconstruction:</em> Analysis of muscle length measurement comparisons, detailed in Supplementary Information Section 3: <em>Accuracy of estimating Muscle Length from 3D reconstructions</em>.</li> <li><em>Accuracy_Muscle_Volume_Reconstruction:</em> Analysis of muscle volume measurement comparisons, detailed in Results Section 3.2: <em>Accuracy of Muscle Volume and Length Reconstruction</em>.</li> <li><em>Correlation_Analysis_SIS:</em> Correlation analysis of muscle origin area to volume for the supraspinatus, infraspinatus, and subscapularis muscles, detailed in Results Section 3.3:<em> Correlation Analysis</em>.</li> <li><em>Correlation_Analysis_TT:</em> Correlation analysis of muscle origin area to volume for the teres major and minor muscles, detailed in Supplementary Information Section 1: <em>Correlation results of teres major and minor</em>.</li> </ul> </li> <li><strong>Requirements.txt:</strong> A file listing the necessary packages required to run the Jupyter notebooks.</li> </ul> </li> <li><strong>Purpose:</strong> The Python files include code for performing statistical analyses and generating figures as described in the manuscript.</li> </ul> </li> </ol> <h2><strong>Usage Instructions:</strong></h2> <ul> <li>For analyzing muscle volumes and lengths, refer to the Jupyter notebooks included in the <code>DataAndCode.zip</code>. Ensure all dependencies listed in the <code>requirements.txt</code> file are installed.</li> <li>The <code>MeshFiles.zip</code> contains the 3D models necessary for visualizing muscle and bone reconstructions, organized by specimen and arm position.</li> </ul>
Thermal profiles in ponds and shallow lakes during summer to winter shoulder season
Autumn is an important transition time for freshwater ecosystems where many lakes turnover, going from thermally stratified to mixed in a short time. Ponds are more globally abundant than lakes, yet, the seasonal transition of ponds is poorly understood. To evaluate the mixing regimes of ponds, we examined summer into autumn thermal dynamics in 37 ponds and shallow lakes across temperate North America and Europe. This dataset provides a time series dataset of water temperatures across the water column along with characteristics of each study waterbody, including some physical, chemical, and biological parameters. Data from four waterbodies (Eddy, Tumbledown, Cranberry, Horns) have more extensive datasets published in Gavin et al. (2025). Gavin, A.L., J.E. Saros, R. Hovel, S. Birkel, S. Nelson, W.H. McDowell, and J. Daly. 2025. Sub-Alpine Lake (>600 m) High-Frequency Water Temperature, DOC (2007-2021), and Weather Station (Fall 2023) Dataset, Maine, USA. ver 1. Environmental Data Initiative. https://doi.org/10.6073/pasta/6c6286abeccc90448af0f73251843407 (Accessed 2025-09-16).
Shoulder kinematics derived from radiographic and optical motion analysis
<p>This dataset contains torso/arm, scapula, and humerus kinematics from subjects performing a variety of static poses and dynamic activities. The humerus and scapula were imaged at 100 Hz using a biplane fluoroscopy/dynamic stereoradiography system. Then, 3D models of the humerus and scapula were constructed from each subject’s CT scan. Model-based markerless tracking ascertained the 3D position and orientation of each bone model by semi-automatically aligning digitally reconstructed radiographs against each frame of the radiographic recordings. The kinematics of the torso and arm were measured using skin marker motion capture and co-calibrated spatially and temporally to the radiography system.</p> <p>This repository contains an expanded release of data found in doi:10.5281/zenodo.7542486 and doi:10.5281/zenodo.10972005. The rationale to provide a new repository is that this release, and forthcoming releases, will follow a new format that provides more granular data for past and ongoing studies from our laboratory. These studies may include motion analysis data from healthy controls, pathologic subjects, and those after surgical intervention.</p> <p>v1.1 now contains transforms from Vicon to biplane fluoro coordinate systems.</p> <p> </p>
Reverse Total Shoulder Arthroplasty Alters Humerothoracic, Scapulothoracic, and Glenohumeral Motion During Weighted Scaption
<p>This dataset contains scapula and humerus kinematics from 10 healthy subjects, and 10 subjects post-operative to reverse total shoulder arthroplasty, performing scapular plane abduction (scaption) with and without a 2.2 kg (5 lb) handheld weight. The humerus and scapula were imaged at 100 Hz using a biplane fluoroscopy system. 3D models of the humerus and scapula were constructed from each subject’s CT scan. Model-based markerless tracking ascertained the 3D position and orientation of each bone model by semi-automatically aligning digitally reconstructed radiographs against each frame of the biplane fluoroscopy recordings. The kinematics of the bones are presented relative to each subject's torso. These data are available for download to aid researchers and clinicians in characterizing non-pathologic and reverse total shoulder arthroplasty motion during scapular plane abduction with and without a 5 lb handheld weight.</p>
3D Archaeological Greek Pottery: MHNC-UP-020053, Attic black-figure shoulder lekythos, Group of Vatican G 52
<p><strong>This 3D dataset is related to the publication</strong>:</p> <ul> <li>Moitinho de Almeida, V. (2023). "<a href="https://www.researchgate.net/publication/353038967_Contributions_of_3D_digital_methods_and_techniques_to_the_study_of_ancient_pottery">Contributions of 3D digital methods and techniques to the study of ancient pottery</a>". In <em>Myths, Gods, and Heroes. Greek vase collections in Portugal / Mitos, Deuses e Heróis. As coleções de vasos gregos em Portugal</em>. R. Morais, R. Centeno, D. Ferreira (eds.). Câmara Municipal de Santa Maria da Feira - Museu Convento dos Lóios; Reitoria da Universidade do Porto; Faculdade de Letras da Universidade do Porto; Imprensa da Universidade de Coimbra. Pp.269-291. (ISBN: 978-989-8183-25-5)</li> </ul> <p>3D processed dataset for object MHNC-UP-020053 in the Museu de História Natural e da Ciência da Universidade do Porto (MHNC-UP), Portugal. <strong>CC BY-NC-SA 4.0 license</strong>.</p> <p>MHNC-UP-020053 is an Attic black-figure shoulder <em>lekythos</em>, Group of Vatican G 52, dating from c. 550-500 BCE and unknown provenance (Rocha Pereira & Morais, 2007; Morais, 2019; Morais et al., 2021).</p> <p><strong>Aims</strong>: 3D digital documentation; morphological characterization; technological and functional analysis of archaeological Greek pottery.</p> <p><strong>Data acquisition</strong>: at the MHNC-UP, with a portable non-contact structured white light scanner, Breukmann smartSCAN3D-HE, equipped with stereo colour cameras at 250 mm FOV. Additional metadata is included in the associated spreadsheet.<br><strong>Data processing</strong>: 35 scans aligned and merged. MHNC-UP-020053_3D01.ply: non-manifold edges, self-intersections, small components, and small tunnels in the mesh automatically fixed, noise data removed; orientation and position normalised. MHNC-UP-020053_3D01-holesFilled.ply: holes filled for calculation of material density, filling volume, and centre of mass. Mesh is not watertight (inner surface not digitised due to occlusion). Additional metadata is included in the associated spreadsheet.</p> <p>Access to the MHNC-UP-020053 was granted by the MHNC-UP.</p> <p>When citing this material: please include the original inventory ID (MHNC-UP-020053) reference to the physical object.</p>
WSD4FEDSRM (Wearable sensor data for fatigue estimation during shoulder rotation movements)
<p>The dataset comprises a collection of many data types during shoulder internal rotation, and external rotation exercises from 34 participants, including demographic information, anthropometric measurements, maximum voluntary isometric contraction force measurements, inertial measuring unit data, surface electromyography recordings, photoplethysmogram data from wearable sensors, as well as measurements from the Borg rating of perceived exertion scale and the Karolinska sleepiness scale.</p>
Figure 3 in Toxoplasmosis in a bar-shouldered dove (Geopelia humeralis) from the Zoo of Clères, France
Figure 3. Toxoplasma gondii in a bar-shouldered dove, lung. Two tachyzoites enclosed in a parasitophorous vacuolar membrane (pvm). Note conoid (co), micronemes (mn), rhoptries (ro) with honey-combed contents, and a nucleus (nu) in each tachyzoite. The parasitophorous vacuole has membranous tubules. Transmission electron microscopy.
Figure 2 in Toxoplasmosis in a bar-shouldered dove (Geopelia humeralis) from the Zoo of Clères, France
Figure 2. Toxoplasma gondii in a bar-shouldered dove, lung. Note a tachyzoite with dividing nucleus (arrow) and individual tachyzoites (arrowheads). H&E stain.
Figure 1 in Toxoplasmosis in a bar-shouldered dove (Geopelia humeralis) from the Zoo of Clères, France
Figure 1. Toxoplasma gondii in a bar-shouldered dove, lung. Note the necrotic process. There are numerous intralesional tachyzoites but non-visible at this magnification. H&E stain.
Fig. 11 in Shoulder height, body mass, and shape of proboscideans
Fig. 11. Left humerus of giant Mosbach mammoth (MNHM PW1947/23) from Middle Pleistocene, Mosbach, Germany; in lateral view.
Fig. 10 in Shoulder height, body mass, and shape of proboscideans
Fig. 10. Different growth curves for Loxodonta africana from average-sized to world record specimens based on isometric growth (red), Laws' (1975) equations for wild population in good conditions up to average size (brown), Homo sapiens (in optimal conditions) allometric growth (grey), and the proposed allometric growth curve for proboscideans in this study (black).
Fig. 6 in Shoulder height, body mass, and shape of proboscideans
Fig. 6. Femur length vs. skeletal shoulder height ratio of selected proboscideans based on the data collected in this study (Appendix 1, SOM: table 2; AL unpublished data).
Fig. 3 in Shoulder height, body mass, and shape of proboscideans
Fig. 3. Humerus lengths vs. skeletal shoulder height ratio of selected proboscideans based on the data collected in this study (Appendix 1, SOM: table 2; AL unpublished data). The ratios shaded in grey correspond to the maximal length of the humerus and the white ones to the articular length of the humerus.
Fig. 9 in Shoulder height, body mass, and shape of proboscideans
Fig. 9. Plot of height vs. weight for 561 male Homo sapiens in optimal conditions from 170 cm (low average) to 225 cm tall. Average growth curve (red line).
Fig. 2 in Shoulder height, body mass, and shape of proboscideans
Fig. 2. Scapula lengths vs. skeletal shoulder height ratio of selected proboscideans based on the data collected in this study (Appendix 1, SOM: table 2; AL unpublished data). The ratios shaded in grey correspond to the maximal length of the scapula and the white ones to the articular length of the scapula.
Fig. 5 in Shoulder height, body mass, and shape of proboscideans
Fig. 5. Radius length vs. skeletal shoulder height ratio of selected proboscideans based on the data collected in this study (Appendix 1, SOM: table 2; AL unpublished data).
Fig. 1 in Shoulder height, body mass, and shape of proboscideans
Fig. 1. Reconstruction of the forelimb of the Zhalainuoer III mammoth in anatomical position. The actual shoulder height (black): total height in anatomical position 3690 mm. The height obtained by adding the articular (green): manus (500 mm) + ulna (960 mm) + humerus (1233 mm) + scapula (1075 mm) = 3768 mm. Maximal lengths of different bone elements (red): manus (500 mm) + radius (985 mm) + humerus (1274 mm) + scapula (1115 mm) = 3874 mm. The actual shoulder height can be calculated by multiplying the result by 0.98 in the case of the sum of articular lengths and by 0.95 in the case of maximal lengths.
Fig. 4 in Shoulder height, body mass, and shape of proboscideans
Fig. 4. Ulna lengths vs. skeletal shoulder height ratio of selected proboscideans based on the data collected in this study (Appendix 1, SOM: table 2; AL unpublished data). The ratios shaded in grey correspond to the maximal length of the humerus, and the white ones to the articular length of the humerus.
Fig. 8 in Shoulder height, body mass, and shape of proboscideans
Fig. 8. Fibula length vs. skeletal shoulder height ratio of selected proboscideans based on the data collected in this study (Appendix 1, SOM: table 2; AL unpublished data).
Fig. 7 in Shoulder height, body mass, and shape of proboscideans
Fig. 7. Tibia length vs. skeletal shoulder height ratio of selected proboscideans based on the data collected in this study (Appendix 1, SOM: table 2; AL unpublished data).
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