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93 results for “Tiere”
GPP at FLUXNET Tier 1 sites from P-model
<p>Gross primary production, simulated by the P-model for each FLUXNET 2015 Tier 1 site. The model was driven by site-specific meteorological forcing and MODIS FPAR, extracted for the pixel corresponding to the site location.</p> <p>The CSV files contain simulated GPP values from different model setups conducted with the P-model and used for the publication Stocker et al. <em>Geosci. Mod. Dev. </em>(in review). One file is given for each temporal aggregation level (daily, 8-daily, annual, spatial [= mean annual value by site], and mean seasonal cycle [= mean per day-of-year]. Each file contains output from all model setups presented in Stocker et al. (2019), as given by column <em>setup</em>.</p> <p>The data differs slightly for each file:</p> <p><strong>Daily</strong> gpp_pmodel_fluxnet2015_stocker19gmd_daily.csv:</p> <ul> <li><em>sitename</em>: A character specifying the site ID following the naming given by FLUXNET 2015.</li> <li><em>date: </em>YYYY-MM-DD), date_start (in _8daily, YYYY-MM-DD specifying the first day of the respective 8-day period), year (in _annual, YYYY), doy (in __meanseason, specifying the day-of-year),</li> <li><em>gpp</em>: Simulated gross primary production, in units of g C m<sup>-2</sup> d<sup>-1</sup></li> <li><em>setup</em>: A character specifying the model setup name used in Stocker et al. (2019). See also below.</li> </ul> <p><strong>8-daily</strong> gpp_pmodel_fluxnet2015_stocker19gmd_8daily.csv:</p> <ul> <li><em>sitename</em>: A character specifying the site ID following the naming given by FLUXNET 2015.</li> <li><em>date_start</em> : YYYY-MM-DD specifying the first day of the respective 8-day period</li> <li><em>gpp</em>: Simulated gross primary production, in units of g C m<sup>-2</sup> d<sup>-1</sup></li> <li><em>setup</em>: A character specifying the model setup name used in Stocker et al. (2019). See also below.</li> </ul> <p><strong>Annual</strong> gpp_pmodel_fluxnet2015_stocker19gmd_annual.csv:</p> <ul> <li><em>sitename</em>: A character specifying the site ID following the naming given by FLUXNET 2015.</li> <li><em>year: </em>YYYY</li> <li><em>gpp</em>: Simulated gross primary production, in units of g C m<sup>-2</sup> yr<sup>-1</sup></li> <li><em>setup</em>: A character specifying the model setup name used in Stocker et al. (2019). See also below.</li> </ul> <p><strong>Spatial</strong> gpp_pmodel_fluxnet2015_stocker19gmd_spatial.csv:</p> <ul> <li><em>sitename</em>: A character specifying the site ID following the naming given by FLUXNET 2015.</li> <li><em>gpp</em>: Simulated gross primary production, in units of g C m<sup>-2</sup> yr<sup>-1</sup></li> <li><em>setup</em>: A character specifying the model setup name used in Stocker et al. (2019). See also below.</li> </ul> <p><strong>Mean seasonal cycle</strong> gpp_pmodel_fluxnet2015_stocker19gmd_meanseason.csv:</p> <ul> <li><em>sitename</em>: A character specifying the site ID following the naming given by FLUXNET 2015.</li> <li><em>doy: </em>day-of-year</li> <li><em>gpp</em>: Simulated gross primary production, in units of g C m<sup>-2</sup> d<sup>-1</sup></li> <li><em>setup</em>: A character specifying the model setup name used in Stocker et al. (2019). See also below.</li> </ul> <p> </p>
A two-tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae
<p><b><i>Premise of the study</i></b><b>: </b>Putatively single-copy nuclear (SCN) loci, identified using genomic resources of closely related species, are ideal for phylogenomic inference. However, suitable genomic resources are not available for many clades, including Melastomataceae. We introduce a versatile approach to identify SCN loci for clades with few genomic resources and use it to develop probes for target enrichment<i> </i>in the distantly related <i>Memecylon</i> and <i>Tibouchina</i> (Melastomataceae).</p> <p><b><i>Methods</i></b>: We present a two-tiered pipeline. First, we identified putatively SCN loci using MarkerMiner and transcriptomes from distantly related species in Melastomataceae. Published loci and genes of functional significance were added (384 total loci). Second, using HybPiper, we retrieved 689 homologous template sequences for these loci using genome-skimming data from within the focal clades.</p> <p><b><i>Results</i></b>: We sequenced 193 loci from both <i>Memecylon</i> and <i>Tibouchina</i>, with probes designed from 56 template sequences successfully targeting sequences in both clades. Probes designed from genome-skimming data within a focal clade were more successful than probes designed from other sources.</p> <p><b><i>Discussion: </i></b>Our pipeline successfully identified and targeted SCN loci in <i>Memecylon </i>and <i>Tibouchina</i>, enabling phylogenomic studies in both clades and potentially across Melastomataceae. This pipeline could be easily applied to other clades with few genomic resources. </p>
Pesticide ecotoxicology Tier 1 endpoints database
<p>The database was developed under the contract CT/EFSA/PPR/2010/03 with the purpose to provide a compilation in IUCLID 5.2 of ecotoxicological endpoints of the active substances and plant protection products (PPPs). It was developed to support the revision of guidance documents on aquatic and terrestrial ecotoxicology. The database for all Tier 1 studies where higher tier studies we also available in the dossier submitted under Directive 91/414/EEC for aquatic organisms, bees, non target arthropods, non target plants and soil organisms. The variables include report metadata, active substance, species tested, description of the experimental conditions and endpoint values (e.g LC50, NOEC, EC50, ER50) according to OECD harmonised templates for Effects on biotic systems. The database includes data extraction for 5745 ecotoxicological endpoint and 1625 risk assessment endpoints.</p> <p>The Format XML export from IUCLID 5.2. with author names removed. XSD is included. The study was outsourced after a procurement procedure.</p>
STARS4Water climate indicators - tier 1
<p>This dataset was generated as part of the Horizon Europe project STARS4Water, which is dedicated to collecting and providing access to existing and newly developed datasets for future water resources management. The data entails a set of indicators for assessing climate risks and impacts on integrated water resources systems. More datasets will be added later-on in the project. This first tier is a set of indicators that are directly derived from readily available datasets from e.g. the Copernicus Climate Data Store. The future projections are simplified by projecting them onto (sub)catchments and by reducing the number<br>of scenarios. This makes them easier to handle by river basin managers and for usages in dashboards. </p>
Operating diagram of IF incubator, two identical incubators were used for eggs that were already sorted. They are made up of an isothermal enclosure and contain three tiers (100 × 60 × 17 cm). The water circulating in each tier comes from the same filtration, cooling and sterilisation device. As a result, the eggs placed in the different tiers are subject to the same temperature regime. in Reproduction of Zingel asper (Linnaeus, 1758) in controlled conditions: an assessment of the experiences realized since 2005 at the Besançon Natural History Museum
Operating diagram of IF incubator, two identical incubators were used for eggs that were already sorted. They are made up of an isothermal enclosure and contain three tiers (100 × 60 × 17 cm). The water circulating in each tier comes from the same filtration, cooling and sterilisation device. As a result, the eggs placed in the different tiers are subject to the same temperature regime.
Operating diagram of the incubator, two tiered modules contain six independent incubators. Three shallow hatching are (220 × 60 × 17 cm) stacked on top of each other to create a compact assembly in which each tier functions independently. Eighteen trays covered with eggs can be placed in each tier, allowing the simultaneous incubation of seven to nine lays. in Reproduction of Zingel asper (Linnaeus, 1758) in controlled conditions: an assessment of the experiences realized since 2005 at the Besançon Natural History Museum
Operating diagram of the incubator, two tiered modules contain six independent incubators. Three shallow hatching are (220 × 60 × 17 cm) stacked on top of each other to create a compact assembly in which each tier functions independently. Eighteen trays covered with eggs can be placed in each tier, allowing the simultaneous incubation of seven to nine lays.
Text-fig. 13. Zoophycos isp. a: BK 17, Layer No. 6; b: BK 27, Layer No. 8; c: lateral tunnel continuing from spreite side to the surrounding rock, BK 28, Layer No. 23; d: BK 22, Layer No. 1; e: "juvenile" stage of the structure on a horizontal winding tunnel, BK 21, Layer No. 26; f: BK 24, Layer No. 17; g: broad winding tunnel adjacent to spreite, BK 26, Layer No. 6; h: BK 15, Layer No. 18; i: BK 23, Layer No. 2. Scale bar = 1 cm. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 13. Zoophycos isp. a: BK 17, Layer No. 6; b: BK 27, Layer No. 8; c: lateral tunnel continuing from spreite side to the surrounding rock, BK 28, Layer No. 23; d: BK 22, Layer No. 1; e: "juvenile" stage of the structure on a horizontal winding tunnel, BK 21, Layer No. 26; f: BK 24, Layer No. 17; g: broad winding tunnel adjacent to spreite, BK 26, Layer No. 6; h: BK 15, Layer No. 18; i: BK 23, Layer No. 2. Scale bar = 1 cm.
Text-fig. 12. a: Spirophycus cf. bicornis (HEER, 1877), BK 19, Layer No. 6; b: Spirophycus isp., field photo, Layer No. 23; c–e: Teichichnus isp., full relief, partly weathered, from the upper side, field photos, Layers No. 23, 10 and 23; f, g: Thalassinoides isp., f – BK 12, Layer No. 4, g – field photo, Layer No. 1. Scale bar = 1 cm; field scale in centimetres. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 12. a: Spirophycus cf. bicornis (HEER, 1877), BK 19, Layer No. 6; b: Spirophycus isp., field photo, Layer No. 23; c–e: Teichichnus isp., full relief, partly weathered, from the upper side, field photos, Layers No. 23, 10 and 23; f, g: Thalassinoides isp., f – BK 12, Layer No. 4, g – field photo, Layer No. 1. Scale bar = 1 cm; field scale in centimetres.
Text-fig. 11. a–d: Palaeophycus tubularis HALL, 1847, full relief, mostly flattened, a – field photo, Layer No. 23, b – field photo, Layer No. 10, c – field photo, Layer No. 23, d – field photo, Layer No. 23; e: Phycosiphon isp., concave epirelief of spreite, field photo, Layer No. 12; f: Polykladichnus isp., full relief on a vertical rock section, BK 11, Layer No. 13; g: Protovirgularia isp., epirelief, field photo, Layer No. 12; h: Scolicia isp., BK 30, Layer No. 6; i: Spirocircus isp., field photo, Layer No. 1. Scale bar = 1 cm. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 11. a–d: Palaeophycus tubularis HALL, 1847, full relief, mostly flattened, a – field photo, Layer No. 23, b – field photo, Layer No. 10, c – field photo, Layer No. 23, d – field photo, Layer No. 23; e: Phycosiphon isp., concave epirelief of spreite, field photo, Layer No. 12; f: Polykladichnus isp., full relief on a vertical rock section, BK 11, Layer No. 13; g: Protovirgularia isp., epirelief, field photo, Layer No. 12; h: Scolicia isp., BK 30, Layer No. 6; i: Spirocircus isp., field photo, Layer No. 1. Scale bar = 1 cm.
Text-fig. 10. a: Gordia isp., concave epirelief, field photo, Layer No. 12; b, c: Helminthopsis isp., b – field photo, Layer No. 1, c – BK 34, Layer No. 6; d: Jamesonichnites isp., horizontal cross-section of broad lined shafts, field photo, Layer No. 23; e–i: Nereites isp., e – concavo-convex epirelief, field photo, Layer No. 12, f – full relief of the Nereites ichnofabric, BK 14, Layer No. 2, g – concave epirelief, field photo, Layer No. 12, h, i – full relief solitary specimens, field photo, Layer No. 8. Scale bar = 1 cm. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 10. a: Gordia isp., concave epirelief, field photo, Layer No. 12; b, c: Helminthopsis isp., b – field photo, Layer No. 1, c – BK 34, Layer No. 6; d: Jamesonichnites isp., horizontal cross-section of broad lined shafts, field photo, Layer No. 23; e–i: Nereites isp., e – concavo-convex epirelief, field photo, Layer No. 12, f – full relief of the Nereites ichnofabric, BK 14, Layer No. 2, g – concave epirelief, field photo, Layer No. 12, h, i – full relief solitary specimens, field photo, Layer No. 8. Scale bar = 1 cm.
Text-fig. 7. Vertical polished sections of samples from selected layers. a: Layer No. 2, completely bioturbated, collection of the Czech Geological Survey (abbr. BK), BK 7; b: Layer No. 3, low: nearly completely bioturbated, upper: cross- to ripple bedding, weakly bioturbated, BK 6; c: Layer No. 7, incompletely bioturbated siltstone/mudstone, BK 5; d: Layer No. 8, low: totally bioturbated background with Zoophycos ichnofabric, upper: spotted, completely bioturbated siltstone, BK 4; e: Layer No. 8, low: in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 7. Vertical polished sections of samples from selected layers. a: Layer No. 2, completely bioturbated, collection of the Czech Geological Survey (abbr. BK), BK 7; b: Layer No. 3, low: nearly completely bioturbated, upper: cross- to ripple bedding, weakly bioturbated, BK 6; c: Layer No. 7, incompletely bioturbated siltstone/mudstone, BK 5; d: Layer No. 8, low: totally bioturbated background with Zoophycos ichnofabric, upper: spotted, completely bioturbated siltstone, BK 4; e: Layer No. 8, low:
Text-fig. 6. Zoophycos showing spreiten structure with a continuously meandering tunnel. Schematic drawing of the specimen from unidentified layer from a block out of the measured profile. Scale in centimetres. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 6. Zoophycos showing spreiten structure with a continuously meandering tunnel. Schematic drawing of the specimen from unidentified layer from a block out of the measured profile. Scale in centimetres.
Text-fig. 4. The studied section showing ichnofabric index and ichnological snapshots on the upper bedding planes of layers No. 1, 12 and 23. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 4. The studied section showing ichnofabric index and ichnological snapshots on the upper bedding planes of layers No. 1, 12 and 23.
Text-fig. 1. Photograph of the studied outcrop with wide bedding planes on the Loděnice – vinice above the topmost step of the vineyard. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 1. Photograph of the studied outcrop with wide bedding planes on the Loděnice – vinice above the topmost step of the vineyard.
Text-fig. 9. a: Arenicolites isp., BK 13, Layer No. 6; b–f: Bifungites isp., a set of specimens showing variability in chamber shape, b – field photograph, Layer No. 23, c – field photograph, Layer No. 23, d – field photograph, Layer No. 23, e – parallel-orientated specimens, field photograph, Layer No. 23, f – field photograph, Layer No. 23; g: Didymaulichnus isp., convex epirelief, field photograph, Layer No. 1. Scale bar = 1 cm. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 9. a: Arenicolites isp., BK 13, Layer No. 6; b–f: Bifungites isp., a set of specimens showing variability in chamber shape, b – field photograph, Layer No. 23, c – field photograph, Layer No. 23, d – field photograph, Layer No. 23, e – parallel-orientated specimens, field photograph, Layer No. 23, f – field photograph, Layer No. 23; g: Didymaulichnus isp., convex epirelief, field photograph, Layer No. 1. Scale bar = 1 cm.
Text-fig. 8. a, b: Bifungites isp. with fragments of vertical shafts, a – concave hyporelief BK 20, Layer No. 26, b – full relief BK 33, Layer No. 23; c–e: Palaeophycus sulcatus (MILLER et DYER, 1878), c – BK 29, Layer No. 22, d – BK 18, Layer No. 16, e – BK 31, Layer No. 6; f: Palaeophycus cf. tubularis HALL, 1847, BK 25, Layer No. 22; g: Megagrapton isp., concave hyporelief, BK 32, Layer No. 16; h: Teichichnus isp. (bottom) crossing Zoophycos isp. (centre to right bottom), BK 16, Layer No. 22. Scale bar = 1 cm. in Early Complex Tiering Pattern: Upper Ordovician, Barrandian Area, The Czech Republic
Text-fig. 8. a, b: Bifungites isp. with fragments of vertical shafts, a – concave hyporelief BK 20, Layer No. 26, b – full relief BK 33, Layer No. 23; c–e: Palaeophycus sulcatus (MILLER et DYER, 1878), c – BK 29, Layer No. 22, d – BK 18, Layer No. 16, e – BK 31, Layer No. 6; f: Palaeophycus cf. tubularis HALL, 1847, BK 25, Layer No. 22; g: Megagrapton isp., concave hyporelief, BK 32, Layer No. 16; h: Teichichnus isp. (bottom) crossing Zoophycos isp. (centre to right bottom), BK 16, Layer No. 22. Scale bar = 1 cm.
Figure 7 in Epiplastral and geographic variation in Echmatemys, a geoemydid turtle from the Eocene of North America: A multi-tiered analysis of epiplastral shape complexity
Figure 7. Results of sliding semilandmark process from 3D data, and specimens warped along Principal Component 1 (PC1). A. Thin plate spline deformation grid showing transformation of Echmatemys callopyge mean type along PC1. B. 3D image of Echmatemys callopyge showing the positions of landmarks along the curve indicated in A, specimen no.UNMN.VP.27621. C. 3D image of Echmatemys uintensis showing the positions of landmarks along the curve indicated in D, UMNH.VP.27429. D. Thin plate spline deformation grid showing transformation of E. uintensis mean type along PC1.
Figure 5 in Epiplastral and geographic variation in Echmatemys, a geoemydid turtle from the Eocene of North America: A multi-tiered analysis of epiplastral shape complexity
Figure 5. Principal components plots from geometric morphometric analyses of 2D epiplastral shape data. A. Dorsal epiplastral shape: PC1 (49.3% variance) versus PC2 (16.7% variance). B. Ventral epiplastral shape: PC 1 (47.7% variance) versus PC2 (20.8%) variance.
Figure 4 in Epiplastral and geographic variation in Echmatemys, a geoemydid turtle from the Eocene of North America: A multi-tiered analysis of epiplastral shape complexity
Figure 4. Plot of Tooth-Midline versus Tooth-Lip (TM/TL) values for each specimen. The correlation between these two variables is significant (R2=0.403). Correlation coefficients do not differ significantly between any pair of taxa.
Figure 1 in Epiplastral and geographic variation in Echmatemys, a geoemydid turtle from the Eocene of North America: A multi-tiered analysis of epiplastral shape complexity
Figure 1. Morphological differences in dorsal epiplastral shape between Uintan Echmatemys species. A. Echmatemys callopyge (UMNH.VP.27220). B. Echmatemys uintensis (UMNH.VP.26558). The gular scale is indicated in grey.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
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