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ShareScore release 0.7.1
Dataset results
12 results for “U12-type”
U2- and U12-type intron classifications for Physarum polycephalum in BED format
<p>A BED file containing intron information for <em>Physarum polycephalum</em> introns classified as U2- or U12-type by <a href="https://github.com/glarue/intronIC">intronIC</a>. This data is associated with the following manuscript: https://doi.org/10.1101/2020.10.12.336362; the genome and annotation file used to identify the introns are available here: https://doi.org/10.5281/zenodo.4086119.</p> <p> </p> <p>The file columns are:</p> <p>1. Genome FASTA record name (scaffold)</p> <p>2. Intron start coordinate (0-indexed)</p> <p>3. Intron end coordinate (1-indexed)</p> <p>4. Intron label from intronIC</p> <p>5. U12-type probability score (0-100); introns with scores > 95 were considered U12-type in the manuscript</p> <p>6. Strand</p>
Dataset related to article: "Congenital insensitivity to pain a novel mutation affecting a U12-type intron causes multiple aberrant splicing of SCN9A"
<p>raw data related to article reported at title</p>
Modified version of intronIC for classifying U12-type introns in Physarum polycephalum
<p>A modified version of <a href="https://github.com/glarue/intronIC">intronIC</a> with position-specific BPS score weighting to reflect the unique U12-type BPS motif found in <em>Physarum</em>. See the README inside the included directory for instructions on recreating the intron classifications present in the manuscript.</p> <p> </p> <p>IMPORTANT UPDATE (08/2021): There is a typo in the README file within the archive—in order to run the program correctly, the argument flags "-r12" and "-r2" need to be inverted from how they are listed in the example command. In other words, the "-r12" flag needs to be placed where the "-r2" flag is, and vice-versa. Apologies for the error!</p>
ZRSR1 cooperates with ZRSR2 in regulating splicing of U12-type introns in murine hematopoietic cells I
GEO Series GSE151470. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
Genome-wide analysis of gene expression and intron retention during development in a U12-type splicing-deficient zebrafish mutant
GEO Series GSE53935. Danio rerio. 8 samples. Type: Expression profiling by high throughput sequencing; Expression profiling by array.
Global analysis of the nuclear processing of unspliced U12-type introns by the exosome
GEO Series GSE52539. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other.
ZRSR1 cooperates with ZRSR2 in regulating splicing of U12-type introns in murine hematopoietic cells
GEO Series GSE152432. Mus musculus. 36 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide analysis of gene expression and intron retention during deveopment in a U12-type splicing-deficient zebrafish mutant [microarray]
GEO Series GSE53934. Danio rerio. 6 samples. Type: Expression profiling by array.
Global analysis of binding sites of U2AF1 and ZRSR2 reveals RNA elements required for mutually exclusive splicing by the U2- and U12-type spliceosome
GEO Series GSE203531. Homo sapiens. 11 samples. Type: Other.
Genome-wide analysis of gene expression and intron retention during development in a U12-type splicing-deficient zebrafish mutant [RNA-seq]
GEO Series GSE53758. Danio rerio. 2 samples. Type: Expression profiling by high throughput sequencing.
Aberrant splicing of U12-type introns is the hallmark of ZRSR2 mutant myelodysplastic syndrome
GEO Series GSE63816. Homo sapiens. 22 samples. Type: Expression profiling by high throughput sequencing.
ZRSR1 cooperates with ZRSR2 in regulating splicing of U12-type introns in murine hematopoietic cells II
GEO Series GSE151471. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
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