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Dataset results
11 results for “chimpanzee brain”
Ginkgo Chauvel's left and right superficial white matter atlas of the chimpanzee brain
<p><strong>Superficial Chauvel's chimpanzee white matter atlas.</strong></p> <p>The left and right superficial white matter atlas of the chimpanzee brain was built upon a cohort of 39 in vivo chimpanzees magnetic resonance imaging (MRI) scans shared by the Pr. William D. Hopkins, registered on a template space (Juna.chimp template from Vickery et al. 2020). The construction of this atlas is based on the analysis of the anatomical and diffusion MRI dataset using the tractography and fiber clustering tools available from the Ginkgo toolbox (CEA, NeuroSpin, BAOBAB, GAIA, Ginkgo Team, <a href="https://framagit.org/cpoupon/gkg">https://framagit.org/cpoupon/gkg</a>). The atlas can be visualized using the BrainVISA/Anatomist viewer available at <a href="https://brainvisa.info/web/download.html">https://brainvisa.info/web/download.html</a>.</p> <p><br> The left hemisphere atlas is composed of 422 superficial white matter bundles and the right hemisphere atlas of 400 superficial white matter bundles.<br> <br> The 38 cortical regions considered for the left and right hemispheres were : the anterior/middle/posterior superior frontal gyrus (aSFG/mSFG/pSFG) ; the anterior and posterior middle frontal gyrus (aMFG/pMFG) ; the anterior/middle/posterior inferior frontal gyrus (aIFG/mIFG/pIFG) ; the medial lateral orbitofrontal cortex (mOFC/ lOFC) ; the superior, middle, inferior precentral gyrus (sPrCG / mPrCG / iPrCG) ; the Paracentral Lobule (PCL) ; the anterior and posterior insula (alns / plns) ; the anterior, posterior superior temporal gyrus (aSTG/pSTG) ; the anterior, posterior middle temporal gyrus (aMTG/pMTG) ; the anterior and posterior inferior temporal gyrus (aITG, pITG) ; the anterior and posterior fusiform gyrus (aFFG/pFFG) ; the superior, middle and inferior postcentral gyrus (sPoCG/mPoCG/iPoCG) ; the superior parietal lobule (SPL) ; the supramarginal gyrus (SMG) ; the angular gyrus (AnG) ; the Precuneus (PCun) ; the cuneus (Cun) ; the Lingual Gyrus (LG) ; the superior, middle, inferior occipital gyrus (sOG / mOG/ iOG) ; the entorhinal Cortex (EnC) ; the parahippocampal gyrus (PHC).<br> <br> The atlas is provided using the Anatomist *.bundles/*.bundlesdata format for which metainformation can be found in the *.bundles file among which:<br> - the labels of the different white matter bundles ('labels' entry) following the syntactic rule "<right/left>_<roi1>_<roi2>_<clusterId>",<br> - the number of streamlines populating each white matter bundle ('curve3d_counts' entry), in the same order as the 'labels' key,<br> - the total number of white matter bundles ('item_count' entry),<br> - the total number of streamlines ('curves_count' entry)</p> <p> </p>
Ginkgo Chauvel's deep white matter atlas of the chimpanzee brain
<p><strong>Deep Chauvel's chimpanzee white matter atlas.</strong></p> <p><br> The deep white matter atlas of the chimpanzee brain was built upon a cohort of 39 in vivo chimpanzees magnetic resonance imaging (MRI) scans shared by the Pr. William D. Hopkins, registered on a template space (Juna.chimp template from Vickery et al. 2020). The construction of this atlas is based on the analysis of the anatomical and diffusion MRI dataset using the tractography and fiber clustering tools available from the Ginkgo toolbox (CEA, NeuroSpin, BAOBAB, GAIA, Ginkgo Team, <a href="https://framagit.org/cpoupon/gkg">https://framagit.org/cpoupon/gkg</a>). The atlas can be visualized using the BrainVISA/Anatomist viewer available at <a href="https://brainvisa.info/web/download.html">https://brainvisa.info/web/download.html</a>.</p> <p><br> This atlas is composed of 42 white matter bundles including :<br> - symmetrically on both hemispheres, the anterior, superior and posterior thalamic radiations, the arcuate, dorsal and ventral cingulum, the cortico-spinal tract, the fornix, the frontal aslants, the inferior fronto-occipital fascicle, the inferior longitudinal fasciculus, the middle longitudinal fascicle, the optic radiations, the uncinate fascicle and the visual occipito-temporal fibers,<br> - interhemispheric bundles such as the anterior commissure and the Witelson's subdivisions of the corpus callosum (I, II, III, IV, V, VI, VII),<br> - cerebellar bundles, such as the hypothamic-subthalamic fibers, the cortico-ponto-cerebellar fibers, and the parallel fibers,<br> <br> The atlas is provided using the Anatomist *.bundles/*.bundlesdata format for which metainformation can be found in the *.bundles file among which:<br> - the labels of the different white matter bundles ('labels' entry),<br> - the number of streamlines populating each white matter bundle ('curve3d_counts' entry), in the same order as the 'labels' key,<br> - the total number of white matter bundles ('item_count' entry),<br> - the total number of streamlines ('curves_count' entry)</p>
Gorilla and Chimpanzee Brains
<p>This repository contains data associated with the following publication: </p> <p>Longitudinal connections and the organization of the temporal cortex in macaques, great apes, and humans</p> <p>Authors: Roumazeilles L, Eichert N, Bryant KL, Folloni D, Sallet J, Vijayakumar S, Foxley S, Tendler BC, Jbabdi S, Reveley C, Verhagen L, Dershowitz LB, Guthrie M, Flach E, Miller KL, Mars RB.<br> </p> <p>The text files 'dataset_loc_chimpanzee.txt' and 'dataset_loc_gorilla.txt' contain a link to the datasets.</p> <p>More information can be found in the 'dataset_info.txt' file.</p>
Data from: The heritability of chimpanzee and human brain asymmetry
Open the record for dataset details and reuse information.
Modeling human brain evolution using induced pluripotent stem cells: comparative analysis of neuronal development in humans and chimpanzees
GEO Series GSE83638. Homo sapiens; Pan troglodytes. 12 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary and ontogenetic changes in RNA editing in human, chimpanzee and macaque brains
GEO Series GSE45244. Pan troglodytes; Macaca mulatta. 8 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary Significance of DNA Methylation in Human and Chimpanzee Brains
GEO Series GSE37202. Homo sapiens; Pan troglodytes. 6 samples. Type: Methylation profiling by high throughput sequencing.
MicroRNA expression and regulation in human, chimpanzee, and macaque brain
GEO Series GSE26545. Macaca mulatta; Homo sapiens; Pan troglodytes. 46 samples. Type: Expression profiling by array; Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing.
Gene expression analysis of the human and chimpanzee brain
GEO Series GSE7540. Pan troglodytes; Homo sapiens. 37 samples. Type: Expression profiling by array.
Methylation profiling of the chimpanzee CNTNAP2 gene in brain using high-resolution tiling arrays.
GEO Series GSE52949. Pan troglodytes. 5 samples. Type: Methylation profiling by genome tiling array.
Epigenome analysis of brain between human and chimpanzee
GEO Series GSE38804. Pan troglodytes; Homo sapiens. 24 samples. Type: Methylation profiling by array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.