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370 results for “diploid”

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zenodo44/100

Supporting data: HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101-14 Mgt

<p>Repository for supporting data to the paper: HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101-14 Mgt</p>

opencc-by-4.0Jul 2022View details →
zenodo44/100

A Simulated Heterozygous Diploid Genome for Third-gen Sequencing, Assembly, and Curation

<p>A simulated heterozygous diploid genome based on <em>Saccharomyces</em> <em>cerevisiae</em>, and <em>S. paradoxus</em> homologous chromosomes.</p> <p>Simulated PacBio subreads were generated from both parent haplomes and mixed together. A phased assembly was produced using FALCON assembler and FALCON Unzip (doi:10.1038/nmeth.4035). This dataset and assembly were then used to validate the Purge Haplotigs pipeline (https://bitbucket.org/mroachawri/purge_haplotigs). See workflow.sh for commands, comments and file descriptions.</p>

opencc-by-4.0Nov 2017View details →
zenodo40/100

Fig. 3 in First chromosomal analysis of Gymnorhamphichthys britskii: the remarkable lowest diploid value within the family Rhamphichthyidae (Gymnotiformes)

Fig. 3. Karyotypes of Gymnorhamphichthys britskii arranged a. from Giemsa stained; b. C-banded; and c. after double- FISH with 18S rDNA (red) and 5S rDNA (green) probes.. The NOR-bearing chromosomes (pair 9) are in the box. Note the size heteromorphism involving the NORs detected by the Ag- NOR and 18S rDNA-FISH techniques. Scales bar = 10 µm.

opencc-by-4.0Sep 2019View details →
zenodo40/100

Fig. 2 in Reproductive Potentials Of Diploid And Polyploid Representatives Of The Genus Сobitis (Cypriniformes, Cobitidae)

Fig. 2. Ovarium weight variation depend on erythrocytes area size (mµ) of spined loaches of Stugna River with different ploidy levels.

opencc-by-4.0Jan 2017View details →
zenodo40/100

Fig. 1 in Reproductive Potentials Of Diploid And Polyploid Representatives Of The Genus Сobitis (Cypriniformes, Cobitidae)

Fig. 1. Eggs number variation depend on erythrocytes area size (µm2) of spined loaches of Stugna River with different ploidy levels.

opencc-by-4.0Jan 2017View details →
zenodo40/100

Fig. 3 in Reproductive Potentials Of Diploid And Polyploid Representatives Of The Genus Сobitis (Cypriniformes, Cobitidae)

Fig. 3. Eggs weight (mg) variation depend on erythrocytes area size (mµ) of spined loaches of Stugna River with different ploidy levels.

opencc-by-4.0Jan 2017View details →
zenodo40/100

Fig. 2 in Absorbing Hybridization Of Cobitis Taenia And Sabanejewia Aurata (Cypriniformes, Cobitidae) In Water Reservoirs Of Northern Ukraine Connected With Diploid-Polyploid Complex Formation

Fig. 2. Electrophoretic spectra of enzymes coding by allozymic loci: aspartate amynotransferase (1 — Aat- 1100/100, 2 — Aat-1100/110-110, 3 — Aat-195/110-110, 4 — Aat-1100-100/110, 5 — Aat-195-95/110, 6 — Aat-195-100/110), lactate dehydrogenase (1 — Ldh-B90/90, 2 — Ldh-B100/100, 3 — Ldh-B90/100-100, 4 — Ldh-B90/100/110), malate dehydrogenase (1 — Mdh-1A100/100, 2 — Mdh-1A100/110-110, 3 — Mdh-1A100-100/110).

opencc-by-4.0Nov 2014View details →
dryad40/100

Data of: Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts

<p>These files are results obtained in<br><span><span><span><span>Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts</span></span></span></span><br>by Yoshito Hirata, Arisa H. Oda, Chie Motono, Masanori Shiro &amp; Kunihiro Ohta.</p> <p>There are 33 files for the corresponding each reconstruction of three-dimensional chromosomone structures<br>for each cell.<br>There are 3D structures for 15 GM cells and 18 PBMC cells, which are obtained from the single cell Hi-C data of Tan et al. Science (2018).</p> <p>For each file, there are 6 columns:<br>The first column corresponds to the allele (0: maternal, 1: paternal)<br>The second column corresponds to the chromosome (1-22: chromosome's number, 23: X, 24: Y)<br>The third column corrsponds to the base point.<br>The fourth column, the fifth column and the sixth column correspond to x-, y-, and z-axes of our reconstruction.</p>

opencc-zeroJul 2022View details →
zenodo40/100

Fig. 5 in Spatial Segregation of Diploid and Polyploids Spined Loaches (Сobitis elongatoides-taenia-tanaitica) in the River Systems of Western and Central Ukraine

Fig. 5. Changes in the frequency of polyploids in samples of spined loaches from the Teteriv River, depending on the distance from the mouth. The approximation is performed with a polynomial function.

opencc-by-4.0Jun 2024View details →
zenodo40/100

Fig. 4 in Spatial Segregation of Diploid and Polyploids Spined Loaches (Сobitis elongatoides-taenia-tanaitica) in the River Systems of Western and Central Ukraine

Fig. 4. Frequencies of polyploids and its standard errors in different parts of the first and second-order tributaries of the Dnipro River system: Lower — lower third of the channel, Middle — middle part of the channel, Upper — upper third of the channel. The approximation is performed with a polynomial function.

opencc-by-4.0Jun 2024View details →
zenodo40/100

Fig. 3 in Spatial Segregation of Diploid and Polyploids Spined Loaches (Сobitis elongatoides-taenia-tanaitica) in the River Systems of Western and Central Ukraine

Fig. 3. Frequency of polyploids in spined loach settlements and its standard errors of rivers with different channel lengths, as well as in accessory systems of the rivers (ASR) of the Western and Central Ukraine. The approximation is performed with a polynomial function.

opencc-by-4.0Jun 2024View details →
zenodo40/100

Fig. 2 in Spatial Segregation of Diploid and Polyploids Spined Loaches (Сobitis elongatoides-taenia-tanaitica) in the River Systems of Western and Central Ukraine

Fig. 2. Frequencies of polyploids in spined loach settlements and its standard errors depending on the type of water system of the Western and Central Ukraine. M — main channel, Tr-1, Tr-2, Tr-3 — first, second, and the third-order tributaries, L — lakes. The approximation is performed with a polynomial function.

opencc-by-4.0Jun 2024View details →
zenodo40/100

Fig. 1 in Spatial Segregation of Diploid and Polyploids Spined Loaches (Сobitis elongatoides-taenia-tanaitica) in the River Systems of Western and Central Ukraine

Fig. 1. Distribution of polyploid frequencies in spined loach settlements of the water systems of the Western and Central Ukraine. The approximation is performed with a polynomial function.

opencc-by-4.0Jun 2024View details →
zenodo40/100

Fig. 5 in Spined Loache Settlements Structure (Cobitidae) Of The Eastern Ukraine River Systems And Alternative Character Of Diploid And Polyploid Populations

Fig. 5. Distribution of loaches samples of group of species C. elongatoides, C. taenia, C. tanaitica by the average ratio of diploids in the river systems of Eastern Ukraine, the Oder, Vistula, and Danube (1) against a similar distribution in the river systems of the Eastern Ukraine.

opencc-by-4.0Dec 2022View details →
zenodo40/100

Fig. 6 in Spined Loache Settlements Structure (Cobitidae) Of The Eastern Ukraine River Systems And Alternative Character Of Diploid And Polyploid Populations

Fig. 6. Ratio of diploid (grey fill) and popyploid (black fik) specimens in settlements and invasion routs of polyploid spined loaches.

opencc-by-4.0Dec 2022View details →
dryad40/100

Genome report: Genome sequence of 1S1, a transformable and highly regenerable diploid potato for use as a model for gene editing and genetic engineering

<p>Generation of a genomic resource for a readily transformable diploid potato would provide a resource for high throughput functional analysis in potato. The heterozygous <em>Solanum tuberosum</em> Group Phureja clone 1S1 has a high regeneration rate, self-fertility, desirable tuber traits and is amenable to <em>Agrobacterium</em>-mediated transformation. To create a contiguous genome assembly, a homozygous doubled monoploid of 1S1 (DM1S1) was sequenced using 44 Gbp of long reads generated from Oxford Nanopore Technologies (ONT), yielding a 736 Mb assembly that encoded 31,145 protein-coding genes. The final assembly for DM1S1 represents a nearly complete genic space, shown by the presence of 99.6% (C:99.5%[S:97.8%, D:1.7%],F:0.1%,M:0.4%,n:1614) of the Benchmarking Universal Single Copy Orthologs. Variant analysis with Illumina reads from 1S1 was used to deduce its alternate haplotype using the variant calling tools Strelka2 (v2.9.10), GATK's Haplotypecaller (v4.1.4.1), and Freebayes (v1.3.2). These variants were used to create consensus fasta sequences with the DM1S1 assembly using bcftools (v1.9.64).</p>

opencc-zeroFeb 2023View details →
dryad40/100

Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation (Part 1/2)

Open the record for dataset details and reuse information.

publicAug 2023View details →
dryad40/100

Data of: Imputation-free reconstructions of three-dimensional chromosome architectures in human diploid single-cells using allele-specified contacts

Open the record for dataset details and reuse information.

publicJul 2022View details →
dryad40/100

Measures of cold tolerance in diploid and triploid Daphnia clones exposed to two temperatures

Open the record for dataset details and reuse information.

publicFeb 2025View details →
dryad40/100

Genome report: Genome sequence of 1S1, a transformable and highly regenerable diploid potato for use as a model for gene editing and genetic engineering

Open the record for dataset details and reuse information.

publicFeb 2023View details →

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International Brain Laboratory public data

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