Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
100
datasets available to search
ShareScore release 0.9.0
Dataset results
100 results for “lichen diversity”
FIG. 3 in Changes in functional and taxonomic diversity and composition of corticolous lichens in an altitudinal gradient in Colombia
FIG. 3. — Lichen diversity and vegetation richness in the Chocó region of Valle del Cauca, Colombi: A, mean and standard error for alpha lichen diversity along the altitudinal gradient; B, mean and standard error for alpha lichen diversity by locality and microhabitat; C, beta lichen diversity; D, total lichen species richness (observed and rarefied) by locality.
FIG. 1 in Changes in functional and taxonomic diversity and composition of corticolous lichens in an altitudinal gradient in Colombia
FIG. 1. — Map of the department of Valle del Cauca, Colombia, showing the sampling points: Δ, Chucheros; Z, Pericos; •, El Queremal; O, Cerro El Inglés; ^, Pico Pance.
FIG. 5. — A in Changes in functional and taxonomic diversity and composition of corticolous lichens in an altitudinal gradient in Colombia
FIG. 5. — A, non-metric multidimensional scaling for composition of lichen species along the gradient (Stres=0.21); B, detrended correspondence analysis for the lichen functional traits along the gradient. In both graphs there is a clear separation between elevations, showing a gradient of species composition and functional traits along the altitudinal gradient. Locations: z, Alto Pance; +, Cerro El Inglés; X, El Queremal; •, Pericos; , Chucheros.
FIG. 2 in Changes in functional and taxonomic diversity and composition of corticolous lichens in an altitudinal gradient in Colombia
FIG. 2. — Number of species of the lichen families with higher diversity at each locality in the Chocó region of Valle del Cauca, Colombia.
FIG. 6 in Changes in functional and taxonomic diversity and composition of corticolous lichens in an altitudinal gradient in Colombia
FIG. 6. — Community Weighted Means (CWMs) of functional lichen traits along the altitudinal gradient in the Chocó region of Valle del Cauca, Colombia: A, crustose thallus; B, crustose thallus by microhabitat; C, foliose thallus; D, fruticose thallus; E, fruticose thallus by microhabitat; F, rhizines by microhabitat; G, cyanobacterial photobiont; H, vegetative propagules; I, ascoma; J, ascospore septation (septate, muriform and simple); K, thickness of the ascospore wall; L, size of the ascospores.
FIG. 7 in Changes in functional and taxonomic diversity and composition of corticolous lichens in an altitudinal gradient in Colombia
FIG. 7. — Functional diversity along the altitudinal gradient: A, relative Rao Index; B, functional Dominance.
FIG. 4 in Changes in functional and taxonomic diversity and composition of corticolous lichens in an altitudinal gradient in Colombia
FIG. 4. — Scatter plot for the alpha lichen diversity and tree density ratio in each study site in the Chocó region of Valle del Cauca, Colombia.
Patterns and determinants of lichen abundance and diversity across a subarctic to arctic latitudinal gradient
<p>Macrolichen abundance at the species level in 42 sites across a subarctic (56°N) to arctic (62°N) latitudinal gradient in Nunavik (Québec, Canada). Data was collected in the dominant vegetation types of six regions sampled along this gradient.</p>
Fig. 1 in Epiphytic Lichen Diversity In Broad-Leaved Tree Forests In Latvia
Fig. 1. Location of studied forest stands.
FIG. 2 in Changes in functional and taxonomic diversity and composition of corticolous lichens in an altitudinal gradient in Colombia
FIG. 2. — Continuation.
Effective management for deadwood-dwelling lichen diversity requires landscape-scale habitat protection
<ol> <li>Habitat loss is considered a major threat for biodiversity. However, the scales on which its effects occur are still insufficiently understood, namely, is the amount of available habitat important for species richness on both local and landscape scales? We studied the effects of local and landscape-scale habitat amount on local-scale species density of deadwood-dependent lichens in Swedish boreal forests. Creation and retention of dead wood are common practices to benefit forest biodiversity, and recognizing the relevant scale is critical for them to be successful.</li> <li>We surveyed deadwood-dependent lichens in 90 unmanaged forest stands that differed in the local and landscape habitat amount. The local habitat amount was measured as the amount of dead wood in the sampled stands (m<sup>2</sup> dead wood/ha), while six alternative proxies were used to estimate the landscape habitat amount, i.e., the amount of dead wood in the landscapes surrounding the sampled forest stands. Lichen species density (number of species per standardized dead wood area of 3.7 m<sup>2</sup>) was modelled as a function of local habitat amount and landscape habitat amount at multiple scales (300 m – 5 km from the stands).</li> <li>We found that lichen species density increased with the landscape habitat amount. The proportion of old forests (> 100 years, including newly clear-cut stands that until recently were old forests) within 5 km from the studied stands explained species density better than the other proxies of landscape habitat amount. Local dead wood amount did not affect species density, and there was no interaction between the local and landscape habitat amount. </li> <li> <em>Synthesis and applications</em>: To promote the conservation of deadwood-dependent lichens, the amount of old forests in managed forest landscapes should be maintained or increased. A certain amount of dead wood hosted more lichen species when situated in a landscape with more old forest, while there was no effect of the local dead wood amount. This suggests that management aimed at increasing the local species density of deadwood-dwelling lichens should focus on creating and maintaining habitat in the surrounding landscape rather than on only adding deadwood to that local site. In other words, effective management for deadwood-dependent lichen diversity requires landscape-scale habitat protection.</li> </ol>
Effective management for deadwood-dwelling lichen diversity requires landscape-scale habitat protection
Open the record for dataset details and reuse information.
Patterns and determinants of lichen abundance and diversity across a subarctic to arctic latitudinal gradient
Open the record for dataset details and reuse information.
Figure 3 in Lichen diversity in colombian caribbean dry forest remnants
Figure 3. Species of lichens new to science. a. Fissurina linoana (42977b, holotype); b. Graphis lurizana (42922, holotype); c. Graphis mokanarum (42930, holotype); d. Phaeographis galeanoae (42981, holotype). Thalli with ascomata. Scale = 1 mm.
Data from: Phylogenetic diversity of two geographically overlapping species in the lichen genus Sticta (Ascomycota: Peltigeraceae): isolation by distance, environment, or fragmentation?
<p><span><b>Aim:</b> To test whether the degree of phylogenetic diversity differs in two congeneric, morphologically similar lichens that are both widespread and with a similar geographical range (Neotropics and Hawaii), but differ in altitudinal and habitat preferences, and whether the two species underwent isolation by distance (IBD), environment (IBE), or fragmentation (IBF).</span></p> <p><span><b>Location:</b> South and Central America, Caribbean, Hawaii, Azores.</span></p> <p><span><b>Taxon:</b> <i>Sticta</i> (Peltigeraceae).</span></p> <p><span><b>Methods:</b> Analysis of 395 specimens across the study area; ITS barcoding marker; maximum likelihood tree reconstruction within a broad taxonomic framework; TCS haplotype networks; Mantel test of genetic vs. geographic, environmental, and fragmentation distances; statistical comparison of BIOclim variables.</span></p> <p><span><b>Results:</b><b> </b><i>Sticta andina</i> exhibited high phenotypic variation and high reticulate phylogenetic diversity across its range, whereas the phenotypically more uniform <i>S. scabrosa</i> contained two main haplotypes, one unique to Hawaii (subsp. <i>hawaiiensis</i>). <i>Sticta andina</i> was restricted to well-preserved andine forests and paramos, habitats fragmented due to disruptive topology, whereas <i>S. scabrosa</i> was found in lowland to lower montane forests in rather exposed microsites, representing a more continuous habitat. These differences were statistically significant for several BIOclim variables. Mantel tests on genetic vs. geographic and environmental distances demonstrated that <i>S. scabrosa</i> followed a pattern of IBD across its full range but not within continental Central and South America. In contrast, <i>S. andina</i> did not exhibit IBD but showed weak, yet significant patterns of IBE at continental level and IBF in the northern Andes.</span></p> <p><b>Main Conclusions:</b> Autecology indirectly drives phylogenetic diversity in the two studied species. In the low altitude species, <i>S. scabrosa</i>, phylogenetic diversity is low and shows no correlation with geographic or environmental distances, except for the differentiation of the Hawaiian subspecies. We attribute this to rapid expansion and effective gene flow between populations across a more or less continuously distributed niche representing partially exposed microsites, including disturbed and anthropogenic vegetation, such as planted trees. In contrast, in the high altitude species, <i>S. andina</i>, phylogenetic diversity is high and correlated with both environmental niche differentiation (IBE) and fragmentation caused by the final Andean uplift (IBF). Therefore, an autoecological preference for high altitudes increases the likelihood for higher phylogenetic diversity.</p>
Data from: Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome
Although common knowledge dictates that the lichen thallus is formed solely by a fungus (mycobiont) that develops a symbiotic relationship with an alga and/or cyanobacterium (photobiont), the non-photoautotrophic bacteria found in lichen microbiomes are increasingly regarded as integral components of lichen thalli. For this study, comparative analyses were conducted on lichen-associated bacterial communities to test for effects of photobiont-types (i.e., green algal vs. cyanobacterial), mycobiont-types, and large-scale spatial distances (from tropical to arctic latitudes). Amplicons of the 16S (SSU) rRNA gene were examined using both Sanger sequencing of cloned fragments and barcoded pyrosequencing. Rhizobiales is typically the most abundant and taxonomically diverse order in lichen microbiomes; however, overall bacterial diversity in lichens is shown to be much higher than previously reported. Members of Acidobacteriaceae, Acetobacteraceae, Brucellaceae, and sequence group LAR1 are the most commonly found groups across the phylogenetically and geographically broad array of lichens examined here. Major bacterial community trends are significantly correlated with differences in large-scale geography, photobiont-type, and mycobiont-type. The lichen as a microcosm represents a structured, unique microbial habitat with greater ecological complexity and bacterial diversity than previously appreciated and can serve as a model system for studying larger ecological and evolutionary principles.
Supplementary material 1 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Supplementary material 1 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Supplementary material 2 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
Supplementary material 2 from: Degtjarenko P, Jüriado I, Mandel T, Tõrra T, Saag A, Scheidegger C, Randlane T (2019) Microsatellite based genetic diversity of the widespread epiphytic lichen Usnea subfloridana (Parmeliaceae, Ascomycota) in Estonia: comparison of populations from the mainland and an island. MycoKeys 58: 27-45. https://doi.org/10.3897/mycokeys.58.36557
AN ANALYTICAL INVESTIGATION OF FLORISTICTIC DIVERSITY FOR BIOPROSPECTING LICHENS
<p>From ancient times, lichens have been considered a veritable "treasure chest" of natural goods due<br>to their wide variety of applications. Traditions of using lichens in the kitchen, as medicine, in the<br>perfume and dying industries, in brewing and distilling, and as decorative accents date back<br>centuries.In nature, lichen metabolites serve a wide variety of purposes, including but not limited<br>to: weathering rocks; protecting the photobiont from harmful UV rays; recycling nutrients;<br>limiting herbivore damage; and maintaining the symbiotic balance.In addition to providing<br>nutrition for animals, lichens are also used as human food by several societies. Certain lichen<br>species are eaten only in times of hunger, while others are eaten as a staple meal or even as a<br>delicacy due to their high nutrient content. Researchers looking into the matter have found that the<br>high carbohydrate content of lichens is what makes them so appealing as a food source. Lichens,<br>despite their low protein concentration, have some potential as a protein replacement. Because of<br>their low fat content and high crude fiber content, lichens are an excellent dietary source</p>
Integrative biodiversity inventories: characterizing lichen-forming fungal diversity in Glen Canyon National Recreation Area using DNA barcoding and vouchered specimens
<p>The Colorado River and its tributaries on the Colorado Plateau are home to unique desert river ecosystems and changing environmental conditions. Within this region, the Glen Canyon National Recreation Area (GCNRA) is comprised of rugged, high desert terrain and is managed by the United States National Parks Service as both a recreational and conservation area. Despite the ecological and economic importance of GCNRA, significant components of the ecological communities therein remain poorly characterized, including lichens. Accurately characterizing lichen-forming fungal diversity is challenging due to poorly known taxonomic groups, underexplored regions/habitats, and varying interpretations of morphological differences, including the recognition of environmentally modified forms. To better understand lichen diversity in GCNRA, we used an integrative taxonomic approach, incorporating both traditional morphology-based identification and information from the standard fungal DNA barcoding marker, the ITS, to compile a thorough inventory of lichen-forming fungi in Fifty-Mile Canyon. Vouchered lichen specimens were collected in 2019, and from these the ITS marker was sequenced. Candidate species-level lineages were delimited from family-level multiple sequence alignments using the Assemble Species by Automatic Partitioning web server. Specimens comprising DNA-based candidate species were then evaluated using traditional taxonomically diagnostic characters to link these, where possible, to currently described species. For Fifty-Mile Canyon, we document 100 putative species in 15 families, each represented by vouchered specimens, ITS sequence data, and photographic documentation. For comparison, a survey of historic records from GCNRA revealed a total of 124 documented lichen-forming fungal species throughout the NRA and adjacent land. Approximately 50% of the species documented in Fifty-Mile Canyon had not previously been found in GCNRA, and similar proportions of species diversity have been documented in GCNRA but not observed in our survey. We report three species new to North America – <em>Calogaya ferrugineoides</em> (H. Magn.) Arup, Froden & Sochting, <em>Endocarpon deserticola</em> T. Zhang, X. L. Wei & J. C. Wei and <em>Xanthocarpia ferrari</em> (Bagl.) Frödén, Arup & Søchting – verified using ITS sequencing data. In addition, <em>Circinaria squamulosa</em> sp. nov. is formally described here, currently known only from sandstone slabs in Fifty-Mile Canyon. However, the taxonomic identity of many of the candidate species from Fifty-Mile Canyon remained ambiguous at the species level, and some collections likely represent undescribed species-level lineages. Our results revealed unexpected, high species-level diversity of lichen-forming fungi at local scales and that overall lichen diversity across the entire GCNRA is likely vastly undercounted. These data – including DNA barcodes for the vast majority of lichen-forming fungi occurring in this canyon – provide an important resource that can be integrated into subsequent lichen biodiversity research in the southwestern United States and other semi-arid climates.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.