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Dataset results
12 results for “panzootic”
Data from: Prelude to a panzootic: gene flow and immunogenetic variation in northern little brown myotis vulnerable to bat white-nose syndrome
The fungus that causes bat white-nose syndrome (WNS) recently leaped from eastern North America to the Pacific Coast. The pathogen's spread is associated with the genetic population structure of a host (Myotis lucifugus). To understand the fine-scale neutral and immunogenetic variation among northern populations of M. lucifugus, we sampled 1142 individuals across the species' northern range. We used genotypes at 11 microsatellite loci to reveal the genetic structure of, and directional gene flow among, populations to predict the likely future spread of the pathogen in the northwest and to estimate effective population size (Ne). We also pyrosequenced the DRB1-like exon 2 of the class II major histocompatibility complex (MHC) in 160 individuals to explore immunogenetic selection by WNS. We identified three major neutral genetic clusters: Eastern, Montane Cordillera (and adjacent sampling areas), and Haida Gwaii, with admixture at intermediate areas and significant substructure west of the prairies. Estimates of Ne were unexpectedly low (289–16 000). Haida Gwaii may provide temporary refuge from WNS, but the western mountain ranges are not barriers to its dispersal in M. lucifugus and are unlikely to slow its spread. Our major histocompatibility complex (MHC) data suggest potential selection by WNS on the MHC, but gene duplication limited the immunogenetic analyses.
Fig. 3 in Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
Fig. 3. Timing of chytridiomycosis-associated amphibian declines. (A) Declines by year. Bars indicate the number of declines in a given year, stacked by decline severity. For species for which the exact year of decline is uncertain, the figure shows the middle year of the interval of uncertainty, as stated by experts or inferred from available data. (B) Cumulative declines. Curves indicate the cumulative number of declines in each decline-severity category over time. In (A) and (B), the arrows mark the discovery of chytridiomycosis in 1998.
Fig. 2 in Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
Fig. 2. Taxonomic distribution of chytridiomycosis-associated amphibian declines. Each bar represents one species, and color denotes the severity of its decline. Concentric circles indicate, from inner to outer, order (Caudata or Anura), family, and genus. Full names are given only for families and genera that include>5 and>2 species, respectively; details for all taxa are in table S4. Within each taxonomic level, sublevels are ordered alphabetically. Protruding bars indicate species for which there is evidence of recovery. [Photo credits (left to right): Telmatobius bolivianus, I.D.l.R.; Atelopus zeteki, B.G.; and Craugastor crassidigitus, B.G.]
Fig. 4 in Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
Fig. 4. Severity of chytridiomycosis-associated amphibian declines in relation to the geographic and elevational ranges of species. (A) Declines in relation to geographic range. Each dot indicates a species, located randomly along the perimeter of a circle with radius equal to the log10 of the species's geographic range in kilometers squared. (B) Declines in relation to elevational range. Horizontal bars, boxes, and vertical bars indicate, respectively, mean, first and second quartiles, and 95% quantiles of elevation ranges within each category of decline severity.
Fig. 1 in Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
Fig. 1. Global distribution of chytridiomycosis-associated amphibian species declines. Bar plots indicate the number (N) of declined species, grouped by continental area and classified by decline severity. Brazilian species are plotted separately from all other South American species (South America W); Mesoamerica includes Central America, Mexico, and the Caribbean Islands; and Oceania includes Australia and New Zealand. No declines have been reported in Asia. n, total number of declines by region. [Photo credits (clockwise from top left): Anaxyrus boreas, C. Brown, U.S. Geological Survey; Atelopus varius, B.G.; Salamandra salamandra, D. Descouens, Wikimedia Commons; Telmatobius sanborni, I.D.l.R; Cycloramphus boraceiensis, L.F.T.; Cardioglossa melanogaster, M.H.; and Pseudophryne corroboree, C. Doughty]
Fig. 1 in Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
Fig. 1. Global distribution of chytridiomycosis-associated amphibian species declines. Bar plots indicate the number (N) of declined species, grouped by continental area and classified by decline severity. Brazilian species are plotted separately from all other South American species (South America W); Mesoamerica includes Central America, Mexico, and the Caribbean Islands; and Oceania includes Australia and New Zealand.
Fig. 1 in Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
Fig. 1. Global distribution of chytridiomycosis-associated amphibian species declines. Bar plots indicate the number (N) of declined species, grouped by continental area and classified by decline severity. Brazilian species are plotted separately from all other South American species (South America W); Mesoamerica includes Central America, Mexico, and the Caribbean Islands; and Oceania includes Australia and New Zealand. No declines have been reported in Asia. n, total number of declines by region. [Photo credits (clockwise from top left): Anaxyrus boreas, C. Brown, U.S. Geological Survey; Atelopus varius, B.G.; Salamandra salamandra, D. Descouens, Wikimedia Commons; Telmatobius sanborni, I.D.l.R; Cycloramphus boraceiensis, L.F.T.; Cardioglossa melanogaster, M.H.; and Pseudophryne corroboree, C. Doughty]
Fig. 2 in Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
Fig. 2. Taxonomic distribution of chytridiomycosis-associated amphibian declines. Each bar represents one species, and color denotes the severity of its decline. Concentric circles indicate, from inner to outer, order (Caudata or Anura), family, and genus. Full names are given only for families and genera that include>5 and>2 species, respectively; details for all taxa are in table S4. Within each taxonomic level, sublevels are ordered alphabetically. Protruding bars indicate species for which there is evidence of recovery. [Photo credits (left to right): Telmatobius bolivianus, I.D.l.R.; Atelopus zeteki, B.G.; and Craugastor crassidigitus, B.G.]
Fig. 4 in Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity
Fig. 4. Severity of chytridiomycosis-associated amphibian declines in relation to the geographic and elevational ranges of species. (A) Declines in relation to geographic range. Each dot indicates a species, located randomly along the perimeter of a circle with radius equal to the log10 of the species's geographic range in kilometers squared. (B) Declines in relation to elevational range. Horizontal bars, boxes, and vertical bars indicate, respectively, mean, first and second quartiles, and 95% quantiles of elevation ranges within each category of decline severity.
Data from: Prelude to a panzootic: gene flow and immunogenetic variation in northern little brown myotis vulnerable to bat white-nose syndrome
Open the record for dataset details and reuse information.
Data from: Wild birds affected by Highly Pathogenic Avian Influenza A(H5N1) worldwide: Epidemiological insights into the recent panzootic
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The panzootic potential of SARS-CoV-2
<p>Our dataset collection comprises files containing tree files and character matrices, serving as invaluable resources for researchers aiming to reproduce or extend the findings presented in our manuscript.</p> <ul> <li>panzootic_virus_metadata_lineage3.csv - metadata to make the trees (Figure 2)</li> <li>panzootic_virus.fa - the virus alignment file (Figure 2)</li> <li>panzootic_virus_rooted.treefile - the virus tree file (Figure 2)</li> <li>AA_gisaid_revANNA-ADR_05042022finalAL.xlsx - dataset for generation Figure 3</li> <li>COVID_ToL,csv - metadata for mammal tree and trait matrix</li> <li>COVID_ToL_Infection.csv - metadata for mammal tree and trait matrix</li> <li>COVID_ToL_ACE2.csv - metadata for mammal tree and trait matrix</li> <li>COVID_ToL_CAT.csv - metadata for cat tree and trait matrix</li> <li>TopoFree_ND_MCC_SpeciesTree.rdata - Species tree file</li> <li>TopoFree_ND_MCC_SpeciesTree_ace_ACE2_ARD.rdata - Figure S3</li> <li>TopoFree_ND_MCC_SpeciesTree_simmap_ACE2_ARD.rdata - Figure S2</li> <li>TopoFree_ND_MCC_Famtree_V2.rdata - Family tree file</li> <li>TopoFree_ND_MCC_FamTree_V2_ace_ACE2.rdata - Figure S4</li> <li>TopoFree_ND_MCC_Famtree_V2_simmap_ACE2.rdata - Figure 4</li> <li>TopoFree_ND_CatTree.rdata - Cat tree file</li> <li>TopoFree_ND_MCC_CatTree_ace_Infection_ARD.rdata - Figure S6</li> <li>TopoFree_ND_MCC_CatTree_simmap_Infection_ARD.rdata - Figure S5</li> </ul>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.