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GenBank accession numbers of the four marker genes and associated voucher specimens/tissues that were used in this study. For more details see Guo et al. (2014). Sequences of species in bold are unpublished and were provided by P. Guo as personal communication in Rediscovery of Andrea's keelback, Hebius andreae (Ziegler & Le, 2006): First country record for Laos and phylogenetic placement
GenBank accession numbers of the four marker genes and associated voucher specimens/tissues that were used in this study. For more details see Guo et al. (2014). Sequences of species in bold are unpublished and were provided by P. Guo as personal communication
FIG. 1 in Rediscovery of Obeliscus agassizi Pilsbry, 1906 (Gastropoda, Subulinidae, Obeliscinae), annotated checklist of species of Obeliscus Beck, 1837 and first description of the anatomy for the genus
FIG. 1. — Obeliscus agassizi Pilsbry, 1906 shell and living specimen: A, SEM of apex in profile; B, same, middle region of teleoconch; C, same, last whorl, frontal view, asterisk showing epiphragm; D-F, living crawling specimen, shell length c. 6 mm; G, detail of suture of protoconch, SEM; H, detail of epiphragm insertion on body whorl. Scale bars: A-C, 1 mm; G, 0.15 mm; H, 0.1 mm.
FIGURE 4 in Rediscovery of the bizarre Cretaceous ant Haidomyrmex Dlussky (Hymenoptera: Formicidae), with two new species
FIGURE 4. Reconstructed habitus of Haidomyrmex zigrasi, n. sp. (top), and H. scimitarus, n. sp. (middle), showing main portions of body, and habitus drawing (bottom) of H. scimitarus with appendages included.
What factors influence the rediscovery of lost tetrapod species? Appendix G: Variables tested for their influence on rediscovery
<p>For the study associated with this dataset, we created a database of lost and rediscovered tetrapod species and identified patterns in their distribution and factors influencing rediscovery. This appendix provides a list of the lost and rediscovered species and all data used to calculate 11 variables (V):</p> <ul> <li>V1: Taxonomic status - class, order, family, species name, common name;</li> <li>V2: Countries / islands occupied by each species;</li> <li>V3: The cumulative number of lost and rediscovered species - four columns, (i) last seen date, (ii) rediscovered date, (iii) for rediscovered species, the number of years lost, (iv) for lost species, the number of years lost;</li> <li>V4: Time lost (the number of years each species has been lost for);</li> <li>V5: Adult body mass (g) of each species;</li> <li>V6: Habitat breadth - the number of broad habitat types occupied by each species;</li> <li>V7: Habitat type - the broad habitat types occupied by each species;</li> <li>V8: Small island / mainland - whether a species occupies a small island (< 20,000 km<sup>2</sup>) or a mainland location (including islands > 20,000km<sup>2</sup>) (0 = mainland, 1 = small island);</li> <li>V9: Threats - the different threats associated with each species;</li> <li>V10: Human development - the highest level of human development across the range of each species, measured using the Human Development Index (HDI);</li> <li>V11: Survey effort - the level of effort invested in searching for each species (1 = low, 2 = medium, 3 = high, 4 = very high). See Supporting Information (Table S1) for the methods used to calculate this variable.</li> </ul>
What factors influence the rediscovery of lost tetrapod species? Appendix E: Lost and rediscovered species
<p>For the study associated with this dataset, we created a database of lost and rediscovered tetrapod species and identified patterns in their distribution and factors influencing rediscovery. This appendix provides a list of the lost and rediscovered tetrapod species used in the analysis. It includes data on:</p> <ul> <li>taxonomy (class, order, family, species, common name, and whether the species is a subspecies);</li> <li>location (continent, country, region);</li> <li>each species threat status (as published on the IUCN Red List of Threatened Species: <a href="https://www.iucnredlist.org/">https://www.iucnredlist.org/</a>).</li> </ul> <p>The appendix also indicates:</p> <ul> <li>whether each species was included in another list of lost tetrapod species published by the organisation Re:wild (<a href="https://www.rewild.org/">https://www.rewild.org/</a>);</li> <li>whether each species was used to construct the phylogenetic trees used for analysis.</li> </ul>
What factors influence the rediscovery of lost tetrapod species? Appendix F: Excluded species
<p>For the study associated with this dataset, we created a database of lost and rediscovered tetrapod species and identified patterns in their distribution and factors influencing rediscovery. Our lost species list included many of the species on another published list of lost species compiled by Re:wild (<a href="https://www.rewild.org/)">https://www.rewild.org/)</a> in collaboration with the International Union for Conservation of Nature (IUCN) (<a href="https://www.iucn.org/">https://www.iucn.org/</a>). However, we did not include some of the species included on the Re:wild/IUCN list. This appendix provides a list of those species. It includes the following information for each species:</p> <ul> <li> <p>taxonomy - class, order, scientific name, common name;</p> </li> <li> <p>threat status (as published on the IUCN Red List of Threatened Species);</p> </li> <li> <p>location - continent / island, range / country.</p> </li> </ul>
Fig. 4 in Rediscovery of two species of Croton (Euphorbiaceae) from littoral habitats of eastern Madagascar
Fig. 4. – Croton chapelieri Baill. (A-F) and C. vatomandrensis Leandri (G-L). A-C. Staminate flower: side view (A), top view (B) and top view with stamens removed to show the five nectaries (C). D-F. Pistillate flower: side view (D), top view (E), and top view with ovary removed to show the five nectaries (F). G-I. Staminate flower: side view (G), top view (H), and top view with stamens removed to show the five nectaries (I). J-L. Pistillate flower: side view (J), top view (K), and top view with ovary removed to show the five nectaries (L). [A-F: van Ee et al. 1181; G-L: van Ee et al. 1194]
Fig. 2. – Croton chapelieri Baill. A in Rediscovery of two species of Croton (Euphorbiaceae) from littoral habitats of eastern Madagascar
Fig. 2. – Croton chapelieri Baill. A. Typical littoral habit at Mahabo, Atsimo-Atsinanana Region, Fianarantsoa Province; B. Shrubs growing
Figure 2. A–G, Madagascan Scarabaeini species. A, B in Rediscovery of Scarabaeus sevoistra Alluaud, 1902 (Coleoptera: Scarabaeinae): biological notes and IUCN Red Listing
Figure 2. A–G, Madagascan Scarabaeini species. A, B, holotype male of Scarabaeus sevoistra Alluaud, 1902 and the associated labels from the MNHN; C, habitus drawing of a female S. sevoistra (from Paulian & Lebis (1960: 14)) for comparison; note the dimorphism in the shape and form of the protibiae of the male (A) and female (C); D, Scarabaeus radama Fairmaire, 1895; E, F, Scarabaeus viettei (Paulian, 1953), holotype female and the associated labels from the MNHN. Scale bar is 10 mm.
Figure 3 in Odonatofauna in a Brazilian Cerrado area, featuring the rediscovery of two species
Figure 3. New species and new records to Minas Gerais state / Figura 3. Nuevas especies y nuevos registros para el estado de Minas Gerais. (a) Acanthagrion marinae Lozano & Rodrigues, 2018. (b) Argia bicellulata (Calvert, 1909). (c) Minagrion veredae Vilela & Souza, 2023 (paratype). (d) Telebasis carminita Calvert, 1909. (e) Erythrodiplax anatoidea Borror, 1942. (f) Hetaerina dutati Machado, 2017. (g) Idiataphe batesi (Ris, 1913). (h) Argia sp. (i) Telebasis racenisi Bick & Bick, 1995. (j) Telebasis simulata Tennessen, 2002.
Figure 4. Progomphus geijskesi Needham, 1944 in Odonatofauna in a Brazilian Cerrado area, featuring the rediscovery of two species
Figure 4. Progomphus geijskesi Needham, 1944. (a) Lateral view of anal appendages. (b) Ventral view of anal appendages. (c) Anterior view of pterothorax. / Figura 4. Progomphus geijskesi Needham, 1944. (a) Vista lateral de los apéndices anales. (b) Vista ventral de los apéndices anales. (c) Vista anterior del pterotórax.
Figure 2 in Odonatofauna in a Brazilian Cerrado area, featuring the rediscovery of two species
Figure 2. Some Odonata species recorded at the PNGSV, Minas Gerais state, southeastern Brazil. / Figura 2. Algunas especies de Odonata registradas en el PNGSV, estado de Minas Gerais, sureste de Brasil. A. Castoraeschna januaria. B. Erythemis peruviana - female. C. Erythrodiplax fusca. D. Erythrodiplax latimaculata (above), E. fusca (below). E. Zenithoptera lanei. F. Hetaerina longipes. G. Argia sp. H. Argia botacudo. I. Oxyagrion impunctatum.
Figure 8 in Odonatofauna in a Brazilian Cerrado area, featuring the rediscovery of two species
Figure 8. Odonata inventories conducted in Cerrado areas in Brazil. / Figura 8. Inventarios de odonata realizados en áreas del Cerrado en Brasil. 1. Calvert 1948. 2. Santos & Machado 1983. 3. Ferreira Peruquetti & Fonseca Gessner 2003. 4. Ferreira Perruquetti 2004. 5. Cortês et al. 2011. 6. Almeida et al. 2013. 7. Souza et al. 2013. 8. Juen et al. 2014. 9. Bedê et al. 2015. 10. Machado & Bedê 2015. 11. Vilela et al. 2016. 12. Rodrigues & Roque 2017. 13. Barbosa et al. 2018. 14. Rodrigues et al. 2018. 15. Bastos et al. 2019. 16. Borges et al. 2019. 17. Prado et al. 2019. 18. Moura et al. 2020. 19. Vilela et al. 2020. 20. Venâncio et al. 2021. 21. Gouvêa et al. 2023. Note that some areas were sampled in more than one study (represented by triangles), and some studies were conducted in more than one area (e.g., 12, 14, 19). / Tenga en cuenta que algunas áreas fueron muestreadas en más de un estudio (representadas por triángulos) y algunos estudios se realizaron en más de un área (e.g., 12, 14, 19).
Figure 6 in Odonatofauna in a Brazilian Cerrado area, featuring the rediscovery of two species
Figure 6. Analysis of Principal Coordinates (PCoA) and PERMANOVA test for the Odonata community of PNGSV, Minas Gerais state, between the dry and rainy seasons. Different colors indicate different seasons. / Figura 6. Análisis de Coordenadas Principales (PCoA) y prueba PERMANOVA para la comunidad Odonata del PNGSV, estado de Minas Gerais, entre la estación seca y la lluviosa. Diferentes colores indican diferentes estaciones.
Figure 5. Argia botacudo Calvert, 1909 in Odonatofauna in a Brazilian Cerrado area, featuring the rediscovery of two species
Figure 5. Argia botacudo Calvert, 1909. (a) Cercus in mediodorsal view. (b) Closeup of left cercus in mediodorsal view. (c-d) Lateral and dorsal views. Drawings provided by Rosser Garrison. / Figura 5. Argia botacudo Calvert, 1909. (a) Cerco en vista mediodorsal. (b) Primer plano del cerco izquierdo en vista mediodorsal. (c-d) vistas lateral y dorsal. Dibujos proporcionados por Rosser Garrison.
Fig. 7 in Rediscovery of Ixodes confusus in Australia with the first description of the male from Australia, a redescription of the female and the mitochondrial (mt) genomes of five species of Ixodes
Fig. 7. Maximum likelihood (ML) phylogenetic tree from entire mt genomes (15,254 bp alignment). Tip-labels indicate NCBI accession numbers. Numbers above branches show Maximum Likelihood bootstrap support whereas numbers below branches show the Bayesian Posterior Probability support. Ixodes pavlovskyi Pomerantzev, 1946, one of the species of "other Ixodes" clade (sensu Barker et al., 2021), for which an entire mitochondrial (mt) genome was available in GenBank, was set as the outgroup. The scale bar indicates 0.07 nucleotide substitutions per nucleotide site for the 15,254 nucleotide sites in our alignment of theses entire mt genomes. So, for example, there were about 1067 nucleotide substitutions along the branch that leads to I. (Ceratixodes) uriae plus I. (Sternalixodes) holocyclus plus I. (Exopalpiger) fecialis, which is marked with an asterisk (i.e. 0.07 nucleotide substitutions per nucleotide site x 15,254 nucleotide sites (bps) = 1067 nucleotide substitutions). Ticks in bold were sequenced in the present study.
Fig. 6 in Rediscovery of Ixodes confusus in Australia with the first description of the male from Australia, a redescription of the female and the mitochondrial (mt) genomes of five species of Ixodes
Fig. 6. The mitochondrial genomes of Ixodes (Sternalixodes) confusus, I. (St.) myrmecobii, I. (St.) cornuatus, I. (St.) hirsti and I. (St.) trichosuri. Protein-coding genes are shown in green, tRNAs are in yellow, rRNAs are in red whereas the two control regions are in blue. Protein-coding genes are labelled by their fourcharacter abbreviations, tRNAs are labelled by their one-letter amino acid abbreviations whereas the two control regions are labelled as CR1 and CR2. Variation in the size of mitochondrial genome is indicated in parenthesis. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 5 in Rediscovery of Ixodes confusus in Australia with the first description of the male from Australia, a redescription of the female and the mitochondrial (mt) genomes of five species of Ixodes
Fig. 5. Ixodes confusus Roberts (1960), scanning electron micrographs of female. A, Idiosoma, dorsal view; B, Idiosoma showing posterior portion of scutum and alloscutum; C, Idiosoma, ventral view; D, Spiracular plate; E, Gnathosoma, dorsal view; F, Porose areas; G, Gnathosoma, ventral view; H, Coxae. Specimens: A-H, B5510 Etty Bay, Qld. Scale-bars: A, C, 1 mm; B, E, G, H, 0.5 mm; D, F, 0.2 mm.
Fig. 3 in Rediscovery of Ixodes confusus in Australia with the first description of the male from Australia, a redescription of the female and the mitochondrial (mt) genomes of five species of Ixodes
Fig. 3. Holotype (male) of Ixodes confusus Roberts (1960) from Sogeri, Papua New Guinea (QM QM-G2456), horizontal scale bar 1 mm, vertical scale bar 2.7 mm.
Fig. 4 in Rediscovery of Ixodes confusus in Australia with the first description of the male from Australia, a redescription of the female and the mitochondrial (mt) genomes of five species of Ixodes
Fig. 4. Ixodes confusus Roberts (1960), scanning electron micrographs of male. A, Idiosoma, dorsal view; B, Idiosoma, ventral view; C, Anal plate; D, Spiracular plate; E, Gnathosoma, dorsal view; F, Gnathosoma, anteroventral view; G, Coxae. Specimens: A, B6697 Mt Molloy, Qld; B, C, D, F, G B5511 Etty Bay; E, B5537 Cardwell. Scale-bars: A, B, 1 mm; C, D, 0.4 mm; E, F, 0.2 mm; G, 0.5 mm.
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.