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63 results for “trancriptome”
Dataset for a Mouse and Rat liver trancriptomic analysis
<p>Data used for the anlaysis. R scripts used can be found on github: https://github.com/gdevailly/liver_mouse_rat</p> <ul> <li>matrixLiverMouse.txt and rat_full_data_matrix.txt contain GEO expression matrix for mouse and rat rexperiments.</li> <li>GSEmouse.txt and GSErat.txt contain experiment IDs from GEO and experiment titles.</li> <li>GEORat.txt and GEOMouse.txt contain experiment IDs and series IDs from GEO.</li> <li>quantNormData_mouse.tsv and quantNormData_rat.tsv contain normalised expression matrices.</li> <li>fileForSCHypeThreshold0.5.txt is the input for SCHype. schype_output_0.5th.nodes.txt and schype_output_0.5th.edges.txt are the outputs.</li> <li>mouse_rat_ampping.txt is the probe mapping used to compare mouse and rat data.</li> <li>geneLists.zip contains gene lists used for ontology analysis (ENSEMBL gene id)</li> </ul>
Dataset for a Mouse and Rat heart trancriptomic and co-expression network analysis
<ul> <li>mouse_heart_data and rat_heart_expression contain GEO expression matrix for mouse and rat experiments.</li> <li>gse_gsm_mouse.txt and gse_gsm_rat.txt contain experiment IDs and series IDs from GEO.</li> <li>heart_quantNormData_mouse.tsv and heart_quantNormData_rat.tsv contain normalised expression matrices.</li> <li>heart_quantNormData_mouse_1sd.tsv and heart_quantNormData_rat_1sd.tsv contain the normalised expression matrices restricted to genes with a standard deviation higher than 1.</li> <li>fileForSCHypeThreshold0.5_heart.txt and fileForSCHypeThreshold0.75_heart.txt are the input for SCHype. schype_output_0.5th_heart.nodes.txt, schype_output_0.5th_heart.edges.txt, schype_output_0.75th_heart.nodes.txt and schype_output_0.75th_heart.edges.txt are the outputs.</li> <li>geneLists.zip contains gene lists used for ontology analysis (ENSEMBL gene id)</li> </ul>
Trancriptome profiling of murine overexpression of p65/RelA mutants
GEO Series GSE98437. Mus musculus. 24 samples. Type: Expression profiling by array.
Trancriptome profiling of human THP-1 knockdown for HOXA9 vs treated with DB1055
GEO Series GSE106831. Homo sapiens. 20 samples. Type: Expression profiling by array.
Paneth cell trancriptome: effect of DEX on TNF induced inflammatory response
GEO Series GSE281876. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Trancriptome sequencing of BGC823 with or without ZBTB7A knockdown
GEO Series GSE147199. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Trancriptome profiling of murine lung after pneumococcal respiratory infection, antibiotic administation, and treatment with immunostimulants
GEO Series GSE118860. Mus musculus. 24 samples. Type: Expression profiling by array.
Trancriptome profiling of genome-edited 16HBE cells on the receptor tyrosine kinase MET in response to HGF
GEO Series GSE184514. Homo sapiens. 16 samples. Type: Expression profiling by array.
Trancriptome profiling of human OCI-AML3 AML cell line stably transfected by pMEP4-Empty or pMEP4-RhoH plasmids, respectively.
GEO Series GSE138479. Homo sapiens. 4 samples. Type: Expression profiling by array.
Trancriptomic analysis of flower bud dormancy in sweet cherry
GEO Series GSE130426. Prunus avium. 82 samples. Type: Expression profiling by high throughput sequencing.
Ikk2 regulates cytokinesis during vertebrate development (Trancriptome profiling from the wild-type and Ikk2 maternal-zygotic mutant zebrafish)
GEO Series GSE90971. Danio rerio. 4 samples. Type: Expression profiling by high throughput sequencing.
Trancriptome profiling of bitransgenic sSHIP X C(3)1 Tag mammary cancer cells
GEO Series GSE108373. Mus musculus. 8 samples. Type: Expression profiling by array.
Trancriptomics of primary human monocytes, Langerhans cells (LC), and monocyte-derived Langerhans cells (moLC)
GEO Series GSE141048. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Trancriptome analysis of Agrobacterium tumefaciens C58 cells in the presence of abundant opines
GEO Series GSE106257. Agrobacterium tumefaciens. 6 samples. Type: Expression profiling by high throughput sequencing.
Trancriptome profiling of murine Hoxa9-transformed MigA9 cell line treated or not with DB818
GEO Series GSE111109. Mus musculus. 3 samples. Type: Expression profiling by array.
Trancriptomics and Lipidomics of Epicardial Ectopic Fat
ClinicalTrials.gov study NCT06590415. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Trancriptomic profiles of Nicotinamide riboside kinase-2 in ischemic heart
GEO Series GSE223868. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Trancriptome analysis of tumor tissue to search for the associations between USP8 mutation status, molecular markers of pituitary adenomas, and clinical, and diagnostic parametres of Cushing disease
GEO Series GSE263206. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Trancriptome analysis in mice deficient for chaperone-mediated autophagy in liver
GEO Series GSE49553. Mus musculus. 12 samples. Type: Expression profiling by array.
Metformin-induced alterations in peripheral blood cell trancriptome of healthy individuals
GEO Series GSE137317. Homo sapiens. 74 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.